Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 1 1
2 1 1
3 1 1
4 1 1
5 1 1
6 1 1
7 1 1
8 1 1
9 1 1
10 1 1
11 1 1
12 1 1
13 1 1
14 1 1
15 1 1
16 1 1
17 1 1
18 1 1
19 1 1
20 1 1
21 1 1
22 1 1
23 1 1
24 1 1
25 1 1
26 1 1
27 1 1
28 1 1
29 1 1
30 1 1
31 1 1
32 1 1
33 1 1
34 1 1
35 1 1
36 1 1
37 1 1
38 1 1
39 1 1
40 1 1
41 1 1
42 1 1
43 1 1
44 1 1
45 1 1
46 1 1
46 46 46

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 402 634
Multiple Base Substitutions 2 2
Deletions 22 156
Insertions 8 143
Mobile Element Insertions 12 57
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 446 992

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F30 I1 R1 19 0 80.9 2738936 98.6% 2700590 139.7
A2 F30 I1 R1 22 0 84.8 2831308 99.0% 2802994 139.7
A3 F30 I1 R1 16 0 167.0 5917792 99.0% 5858614 139.6
A4 F30 I1 R1 28 0 116.1 3990078 98.5% 3930226 139.6
A5 F30 I1 R1 27 0 216.9 7393824 99.0% 7319885 139.7
A6 F30 I1 R1 23 0 161.0 5422050 98.9% 5362407 139.4
A7 F30 I1 R1 21 0 181.5 6086740 97.2% 5916311 139.4
A8 F30 I1 R1 26 0 96.7 3301180 98.9% 3264867 139.6
A9 F30 I1 R1 22 0 111.7 3792142 99.1% 3758012 139.6
A10 F30 I1 R1 21 0 77.0 2587728 98.8% 2556675 139.5
A11 F30 I1 R1 18 0 49.6 1681948 98.6% 1658400 139.6
A12 F30 I1 R1 22 0 73.4 2479828 98.8% 2450070 139.5
A13 F30 I1 R1 22 0 74.2 2557558 99.0% 2531982 139.6
A14 F30 I1 R1 25 0 196.0 6720610 98.6% 6626521 139.2
A15 F30 I1 R1 23 0 123.0 4174798 98.6% 4116350 139.2
A16 F30 I1 R1 19 0 104.5 3531156 98.5% 3478188 139.4
A17 F30 I1 R1 26 0 104.4 3558230 98.5% 3504856 139.2
A18 F30 I1 R1 23 0 74.6 2561806 98.3% 2518255 139.0
A19 F30 I1 R1 18 0 144.6 4920142 98.6% 4851260 139.1
A20 F30 I1 R1 18 0 108.8 3703494 98.5% 3647941 139.0
A21 F30 I1 R1 28 0 89.6 3028504 98.5% 2983076 139.1
A22 F30 I1 R1 19 0 103.4 3498912 98.4% 3442929 139.0
A23 F30 I1 R1 23 0 149.1 5058512 98.7% 4992751 139.4
A24 F30 I1 R1 25 0 100.8 3402112 98.5% 3351080 139.3
A25 F30 I1 R1 18 0 97.7 3311126 98.6% 3264770 139.3
A26 F30 I1 R1 24 0 102.1 3451746 98.8% 3410325 139.3
A27 F30 I1 R1 22 0 114.9 3873054 98.6% 3818831 139.5
A28 F30 I1 R1 18 0 92.8 3130216 98.6% 3086392 139.3
A29 F30 I1 R1 20 0 79.7 2699094 98.6% 2661306 139.3
A30 F30 I1 R1 20 0 129.2 4335974 98.5% 4270934 139.3
A31 F30 I1 R1 23 0 93.9 3172330 98.7% 3131089 139.4
A32 F30 I1 R1 21 0 67.2 2276256 98.7% 2246664 139.5
A33 F30 I1 R1 23 0 80.8 2688548 98.8% 2656285 139.5
A34 F30 I1 R1 21 0 59.5 1980254 98.7% 1954510 139.5
A35 F30 I1 R1 19 0 80.6 2711588 98.8% 2679048 139.3
A36 F30 I1 R1 23 0 109.0 3675808 98.7% 3628022 139.4
A37 F30 I1 R1 22 0 82.2 2777094 99.2% 2754877 139.3
A38 F30 I1 R1 18 0 132.0 4469884 98.6% 4407305 139.3
A39 F30 I1 R1 18 0 93.3 3175106 98.7% 3133829 139.5
A40 F30 I1 R1 19 0 97.5 3265124 98.7% 3222677 139.3
A41 F30 I1 R1 16 0 123.8 4183796 98.7% 4129406 139.2
A42 F30 I1 R1 18 0 81.6 2764732 98.5% 2723261 139.1
A43 F30 I1 R1 24 0 133.3 4498162 98.6% 4435187 139.2
A44 F30 I1 R1 21 0 127.9 4320288 98.7% 4264124 139.1
A45 F30 I1 R1 26 0 104.8 3565582 98.5% 3512098 139.2
A46 F30 I1 R1 24 0 174.8 5918860 98.8% 5847833 139.2

Mutation Needle Plot

Mutation Targets

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