Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 1 1
2 1 1
3 1 1
4 1 1
5 1 1
6 1 1
7 1 1
8 1 1
9 1 1
10 1 1
11 1 1
12 1 1
12 12 12

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 1542 1721
Multiple Base Substitutions 3 3
Deletions 117 209
Insertions 188 260
Mobile Element Insertions 4 15
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 1854 2208

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 163 0 52.9 1786516 99.3% 1774010 139.1
A2 F28 I1 R1 155 0 60.3 2039550 99.3% 2025273 138.7
A3 F28 I1 R1 120 0 93.5 3664254 88.3% 3235536 136.4
A4 F28 I1 R1 159 0 82.1 2830106 99.3% 2810295 139.0
A5 F28 I1 R1 260 0 73.5 2514320 99.3% 2496719 138.8
A6 F28 I1 R1 191 0 83.5 2830284 99.3% 2810472 139.1
A7 F28 I1 R1 183 0 98.6 3427438 96.9% 3321187 138.7
A8 F28 I1 R1 258 0 142.3 4824480 99.1% 4781059 138.9
A9 F28 I1 R1 151 0 87.4 2971636 99.2% 2947862 138.5
A10 F28 I1 R1 180 0 66.5 2263572 99.4% 2249990 138.7
A11 F28 I1 R1 161 0 75.5 2581324 99.3% 2563254 138.8
A12 F28 I1 R1 227 0 52.0 1764248 99.3% 1751898 138.7

Mutation Needle Plot

Mutation Targets

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