mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 278,744 | +A | intergenic (‑239/+75) | PP_0224 ← / ← sctC | Monooxygenase, DszC family/sulfur compound ABC transporter ‑ ATP‑binding subunit |
| RA | 307,866 | +C | intergenic (+881/‑988) | hslO → / → PP_0254 | 33 kDa chaperonin/conserved protein of unknown function |
| RA | 336,125 | +T | coding (210/237 nt) | PP_0278 → | conserved protein of unknown function |
| RA | 353,067 | A→G | intergenic (+34/+84) | hisF → / ← cbcV | Imidazole glycerol phosphate synthase subunit HisF/choline / betaine / carnitine ABC transporter ‑ ATP binding subunit |
| RA | 499,203 | A→G | intergenic (+47/‑249) | uhpA → / → PP_0411 | DNA‑binding response regulator UhpA/Polyamine ABC transporter, ATP‑binding protein |
| RA | 1,070,248 | +GA | intergenic (+48/+94) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger related‑protein |
| RA | 1,126,647 | +C | intergenic (‑101/+48) | tdcG‑II ← / ← gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| RA | 1,419,549 | +C | intergenic (‑38/+98) | PP_1242 ← / ← PP_1244 | conserved protein of unknown function/conserved protein of unknown function |
| RA | 1,499,480 | 2 bp→AC | intergenic (+57/‑106) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| RA | 1,499,508 | +C | intergenic (+85/‑79) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| RA | 1,932,640 | +C | intergenic (‑107/+43) | rluA ← / ← minE | 23S rRNA (746) and tRNA (32) pseudouridine synthase/Cell division topological specificity factor |
| RA | 2,328,326 | C→T | M1M (ATG→ATA) † | PP_2046 ← | Transcriptional regulator, LysR family |
| RA | 2,958,523 | C→T | A428V (GCA→GTA) | PP_2589 → | Aldehyde dehydrogenase family protein |
| RA | 3,845,705 | +G | intergenic (‑72/+26) | PP_3394 ← / ← PP_3395 | putative 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/Transcriptional regulator, LysR family |
| RA | 3,951,159 | T→C | intergenic (‑123/+72) | PP_3486 ← / ← PP_3487 | putative cytochrome c/conserved exported protein of unknown function |
| RA | 3,951,161 | A→T | intergenic (‑125/+70) | PP_3486 ← / ← PP_3487 | putative cytochrome c/conserved exported protein of unknown function |
| RA | 4,345,003 | A→G | E193E (GAA→GAG) | PP_3818 → | Periplamic phosphate‑binding protein |
| RA | 4,586,030 | 2 bp→TC | intergenic (+113/+101) | PP_4061 → / ← PP_4063 | conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase |
| RA | 4,586,035 | +G | intergenic (+118/+97) | PP_4061 → / ← PP_4063 | conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase |
| RA | 4,586,057 | +C | intergenic (+140/+75) | PP_4061 → / ← PP_4063 | conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase |
| RA | 4,740,811 | (T)7→6 | intergenic (+48/+705) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,816 | T→G | intergenic (+53/+700) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,819 | 2 bp→CT | intergenic (+56/+696) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,255 | C→T | intergenic (+492/+261) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,257 | A→C | intergenic (+494/+259) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,261 | A→C | intergenic (+498/+255) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,263 | A→C | intergenic (+500/+253) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,272 | A→G | intergenic (+509/+244) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,274 | A→C | intergenic (+511/+242) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,276 | G→C | intergenic (+513/+240) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,278 | C→T | intergenic (+515/+238) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,283 | +T | intergenic (+520/+233) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,289 | C→G | intergenic (+526/+227) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,292 | C→T | intergenic (+529/+224) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,294 | C→G | intergenic (+531/+222) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,296 | A→C | intergenic (+533/+220) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,298 | C→T | intergenic (+535/+218) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| JC | 4,980,585 | +GGC | intergenic (‑24/+44) | PP_4387 ← / ← flgE | conserved exported protein of unknown function/Flagellar hook protein FlgE |
| JC | 5,555,608 | +GCC | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | conserved protein of unknown function/putative methyl‑accepting chemotaxis transducer |
| RA | 5,674,751 | +G | intergenic (+113/+27) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding protein, acidic stress response factor |
| RA | 5,674,753 | G→C | intergenic (+115/+25) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding protein, acidic stress response factor |
| JC | 5,681,415 | +CGGG | intergenic (‑133/+71) | PP_4986 ← / ← PP_4987 | Channel protein, hemolysin III family/putative Chemotaxis protein |
| RA | 5,740,555 | C→T | S175N (AGC→AAC) | PP_5037 ← | lipocalin family lipoprotein |
| RA | 6,013,885 | T→C | intergenic (+90/+20) | xpt → / ← PP_5266 | Xanthine phosphoribosyltransferase/putative acetyl‑CoA hydrolase family protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AE015451 | 171345–172964 | 176323–175387 | 2424–4979 | 145 [138] | [141] 146 | PP_16SA–[PP_5SA] | PP_16SA,PP_23SA,[PP_5SA] |
| * | * | ÷ | AE015451 | 176628–178394 | 181726–180817 | 2424–5099 | 147 [140] | [139] 143 | PP_16SB–[PP_r01] | PP_16SB,PP_23SB,[PP_r01] |
| * | * | ÷ | AE015451 | 528002–528586 | 529637–528947 | 362–1636 | 142 [140] | [133] 142 | PP_23SC | 23S ribosomal RNA |
| * | * | ÷ | AE015451 | 699764–701674 | 702692–702035 | 362–2929 | 143 [141] | [135] 142 | [PP_23SD] | [PP_23SD] |
| * | * | ÷ | AE015451 | 741542–742463 | 743312–742548 | 86–1771 | 145 [138] | [138] 143 | [PP_0635] | [PP_0635] |
| * | * | ÷ | AE015451 | 745007–745904 | 746885–746028 | 125–1879 | 142 [139] | [141] 142 | [PP_0637]–PP_0638 | [PP_0637],PP_0638 |
| * | * | ÷ | AE015451 | 1296543–1297218 | 1298480–1297481 | 264–1938 | 143 [139] | [141] 144 | PP_1133 | PP_1133 |
| * | * | ÷ | AE015451 | 1327182–1328838 | 1330450–1329501 | 664–3269 | 144 [136] | [141] 142 | PP_23SE–[PP_5SE] | PP_23SE,[PP_5SE] |
| * | * | ÷ | AE015451 | 1440065–1440733 | 1441994–1440996 | 264–1930 | 145 [139] | [139] 142 | PP_1260 | PP_1260 |
| * | * | ÷ | AE015451 | 2443176 | 2443377 | 202 | 142 [140] | [140] 146 | topA | DNA topoisomerase I |
| * | * | ÷ | AE015451 | 2551385–2552238 | 2553867–2552901 | 664–2483 | 146 [141] | [141] 142 | [PP_23SF]–[PP_5SF] | [PP_23SF],[PP_5SF] |
| * | * | ÷ | AE015451 | 2937734–2938386 | 2939330–2938649 | 264–1597 | 143 [141] | [140] 142 | [PP_2570] | [PP_2570] |
| * | * | ÷ | AE015451 | 3522884–3523562 | 3525135–3524454 | 893–2252 | 143 [140] | [139] 144 | PP_3113–[PP_3115] | PP_3113,PP_3114,[PP_3115] |
| * | * | ÷ | AE015451 | 3826312–3827308 | 3828238–3827571 | 264–1927 | 146 [140] | [138] 142 | PP_3381 | PP_3381 |
| * | * | ÷ | AE015451 | 3969338–3970012 | 3971577–3970916 | 905–2240 | 143 [141] | [140] 142 | PP_3499–[PP_3501] | PP_3499,PP_3500,[PP_3501] |
| * | * | ÷ | AE015451 | 4073735–4074746 | 4075680–4075009 | 264–1946 | 144 [141] | [138] 144 | PP_3586 | PP_3586 |
| * | * | ÷ | AE015451 | 4391604–4392366 | 4393381–4392451 | 86–1778 | 145 [141] | [141] 142 | [PP_3868] | [PP_3868] |
| * | * | ÷ | AE015451 | 4486365–4487042 | 4488615–4487946 | 905–2251 | 143 [141] | [141] 147 | PP_3979–[PP_3981] | PP_3979,PP_3980,[PP_3981] |
| * | * | ÷ | AE015451 | 4493390–4494074 | 4495647–4494966 | 893–2258 | 142 [141] | [139] 142 | [PP_3984]–PP_3986 | [PP_3984],PP_3985,PP_3986 |
| * | * | ÷ | AE015451 | 4536271–4537136 | 4538179–4537260 | 125–1909 | 143 [141] | [141] 143 | PP_4024–[PP_4025] | PP_4024,[PP_4025] |
| * | * | ÷ | AE015451 | 5033216–5033891 | 5035454–5034795 | 905–2239 | 142 [141] | [141] 145 | PP_4437–[PP_4439] | PP_4437,PP_4438,[PP_4439] |
| * | * | ÷ | AE015451 | 5036169–5036835 | 5038402–5037724 | 890–2234 | 142 [141] | [139] 143 | PP_4441–[PP_4443] | PP_4441,PP_4442,[PP_4443] |
| * | * | ÷ | AE015451 | 5222631–5223628 | 5224562–5223891 | 264–1932 | 143 [139] | [141] 149 | PP_4603 | PP_4603 |
| * | * | ÷ | AE015451 | 5307653–5308405 | 5310701–5309068 | 664–3049 | 142 [138] | [141] 144 | PP_23SG | PP_23SG |
| * | * | ÷ | AE015451 | 5401810–5402730 | 5403719–5402854 | 125–1910 | 142 [140] | [140] 146 | [PP_4745]–PP_4746 | [PP_4745],PP_4746 |
| * | * | ÷ | AE015451 | 5453081–5453747 | 5454639–5454010 | 264–1559 | 142 [138] | [139] 144 | [PP_4791] | [PP_4791] |
| * | * | ÷ | AE015451 | 6152991–6153659 | 6155213–6154548 | 890–2223 | 142 [138] | [141] 147 | [PP_5396]–PP_5398 | [PP_5396],PP_5397,PP_5398 |