breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 278,744 +A intergenic (‑239/+75) PP_0224 ← / ← sctC Monooxygenase, DszC family/sulfur compound ABC transporter ‑ ATP‑binding subunit
RA 307,866 +C intergenic (+881/‑988) hslO → / → PP_0254 33 kDa chaperonin/conserved protein of unknown function
RA 336,125 +T coding (210/237 nt) PP_0278 → conserved protein of unknown function
RA 353,067 A→G intergenic (+34/+84) hisF → / ← cbcV Imidazole glycerol phosphate synthase subunit HisF/choline / betaine / carnitine ABC transporter ‑ ATP binding subunit
RA 499,203 A→G intergenic (+47/‑249) uhpA → / → PP_0411 DNA‑binding response regulator UhpA/Polyamine ABC transporter, ATP‑binding protein
RA 1,070,248 +GA intergenic (+48/+94) aroP‑I → / ← PP_0928 aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger related‑protein
RA 1,126,647 +C intergenic (‑101/+48) tdcG‑II ← / ← gcvP‑I L‑serine dehydratase/glycine dehydrogenase
RA 1,419,549 +C intergenic (‑38/+98) PP_1242 ← / ← PP_1244 conserved protein of unknown function/conserved protein of unknown function
RA 1,499,480 2 bp→AC intergenic (+57/‑106) trpS → / → zapE Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain
RA 1,499,498 1 bp→CG intergenic (+75/‑89) trpS → / → zapE Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain
RA 1,499,508 +C intergenic (+85/‑79) trpS → / → zapE Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain
RA 1,932,640 +C intergenic (‑107/+43) rluA ← / ← minE 23S rRNA (746) and tRNA (32) pseudouridine synthase/Cell division topological specificity factor
RA 2,958,523 C→T A428V (GCA→GTA)  PP_2589 → Aldehyde dehydrogenase family protein
RA 3,845,705 +G intergenic (‑72/+26) PP_3394 ← / ← PP_3395 putative 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/Transcriptional regulator, LysR family
RA 3,951,159 T→C intergenic (‑123/+72) PP_3486 ← / ← PP_3487 putative cytochrome c/conserved exported protein of unknown function
RA 3,951,161 A→T intergenic (‑125/+70) PP_3486 ← / ← PP_3487 putative cytochrome c/conserved exported protein of unknown function
RA 4,586,030 2 bp→TC intergenic (+113/+101) PP_4061 → / ← PP_4063 conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase
RA 4,586,035 +G intergenic (+118/+97) PP_4061 → / ← PP_4063 conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase
RA 4,586,057 +C intergenic (+140/+75) PP_4061 → / ← PP_4063 conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase
RA 4,740,811 (T)7→6 intergenic (+48/+705) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,740,816 T→G intergenic (+53/+700) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,740,819 2 bp→CT intergenic (+56/+696) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,263 A→C intergenic (+500/+253) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,272 A→G intergenic (+509/+244) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,274 A→C intergenic (+511/+242) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,276 G→C intergenic (+513/+240) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,278 C→T intergenic (+515/+238) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,283 +T intergenic (+520/+233) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,289 C→G intergenic (+526/+227) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,292 C→T intergenic (+529/+224) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,294 C→G intergenic (+531/+222) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,296 A→C intergenic (+533/+220) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,298 C→T intergenic (+535/+218) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,808,176 Δ3 bp intergenic (‑285/‑268) PP_4234 ← / → dsbD‑II Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2
JC 4,980,585 +GGC intergenic (‑24/+44) PP_4387 ← / ← flgE conserved exported protein of unknown function/Flagellar hook protein FlgE
JC 5,555,608 +GCC intergenic (‑84/+87) PP_4887 ← / ← PP_4888 conserved protein of unknown function/putative methyl‑accepting chemotaxis transducer
RA 5,674,751 +G intergenic (+113/+27) rhlE‑II → / ← yceI ATP‑dependent RNA helicase/polyisoprene‑binding protein, acidic stress response factor
RA 5,674,753 G→C intergenic (+115/+25) rhlE‑II → / ← yceI ATP‑dependent RNA helicase/polyisoprene‑binding protein, acidic stress response factor
JC 5,681,415 +CGGG intergenic (‑133/+71) PP_4986 ← / ← PP_4987 Channel protein, hemolysin III family/putative Chemotaxis protein
RA 5,740,555 C→T S175N (AGC→AAC)  PP_5037 ← lipocalin family lipoprotein
RA 6,013,885 T→C intergenic (+90/+20) xpt → / ← PP_5266 Xanthine phosphoribosyltransferase/putative acetyl‑CoA hydrolase family protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ AE015451 171311–175135 176343–175299 165–5033 234 [230] [226] 232 PP_16SA–[PP_5SA] PP_16SA,PP_23SA,[PP_5SA]
* * ÷ AE015451 176596–180565 181794–180729 165–5199 231 [230] [226] 234 PP_16SB–PP_r01 PP_16SB,PP_23SB,PP_r01
* * ÷ AE015451 207493–208135 210100–208181 47–2608 233 [230] [226] 231 PP_0168 putative surface adhesion protein
* * ÷ AE015451 215408–216070 216897–216116 47–1490 233 [230] [230] 234 PP_0168 putative surface adhesion protein
* * ÷ AE015451 527962–528695 529661–528859 165–1700 231 [227] [228] 231 PP_23SC 23S ribosomal RNA
* * ÷ AE015451 699755–701783 702735–701947 165–2981 231 [226] [229] 231 [PP_23SD] [PP_23SD]
* * ÷ AE015451 741526–742461 743333–742539 79–1808 233 [224] [226] 232 PP_0635 PP_0635
* * ÷ AE015451 744974–745904 746918–746028 125–1945 231 [223] [229] 231 [PP_0637]–PP_0638 [PP_0637],PP_0638
* * ÷ AE015451 1296511–1297348 1298512–1297457 110–2002 232 [228] [230] 231 PP_1133 PP_1133
* * ÷ AE015451 1327168–1328842 1330485–1329413 572–3318 235 [228] [230] 234 PP_23SE–PP_5SE PP_23SE,PP_5SE
* * ÷ AE015451 1440029–1440863 1442015–1440972 110–1987 233 [228] [230] 232 PP_1260 PP_1260
* * ÷ AE015451 2551367–2552242 2553880–2552813 572–2514 231 [229] [230] 231 [PP_23SF]–PP_5SF [PP_23SF],PP_5SF
* * ÷ AE015451 2937709–2938410 2939340–2938519 110–1632 233 [230] [230] 231 PP_2570 PP_2570
* * ÷ AE015451 3522856–3523621 3525155–3524403 783–2300 234 [230] [229] 232 PP_3113–PP_3115 PP_3113,PP_3114,PP_3115
* * ÷ AE015451 3826299–3827332 3828264–3827441 110–1966 232 [229] [226] 231 PP_3381 PP_3381
* * ÷ AE015451 3969292–3970111 3971597–3970794 684–2306 232 [230] [229] 233 PP_3499–[PP_3501] PP_3499,PP_3500,[PP_3501]
* * ÷ AE015451 4073710–4074770 4075701–4074879 110–1992 232 [230] [229] 235 PP_3586 PP_3586
* * ÷ AE015451 4391583–4392375 4393399–4392453 79–1817 231 [230] [227] 233 PP_3868 PP_3868
* * ÷ AE015451 4486355–4487141 4488618–4487824 684–2264 231 [229] [229] 231 PP_3979–[PP_3981] PP_3979,PP_3980,[PP_3981]
* * ÷ AE015451 4493360–4494125 4495668–4494907 783–2309 231 [229] [230] 232 PP_3984–PP_3986 PP_3984,PP_3985,PP_3986
* * ÷ AE015451 4536247–4537136 4538193–4537260 125–1947 233 [229] [223] 231 PP_4024–[PP_4025] PP_4024,[PP_4025]
* * ÷ AE015451 5033188–5033990 5035483–5034673 684–2296 233 [230] [230] 232 PP_4437–[PP_4439] PP_4437,PP_4438,[PP_4439]
* * ÷ AE015451 5036138–5036938 5038422–5037667 730–2285 233 [230] [228] 233 PP_4441–[PP_4443] PP_4441,PP_4442,[PP_4443]
* * ÷ AE015451 5222609–5223652 5224573–5223761 110–1965 232 [225] [230] 231 PP_4603 PP_4603
* * ÷ AE015451 5307616–5308493 5310745–5309064 572–3130 231 [229] [228] 231 PP_23SG PP_23SG
* * ÷ AE015451 5401802–5402730 5403745–5402854 125–1944 232 [230] [230] 231 [PP_4745]–PP_4746 [PP_4745],PP_4746
* * ÷ AE015451 5453053–5453877 5454683–5453986 110–1631 231 [230] [227] 231 PP_4791 PP_4791
* * ÷ AE015451 6152956–6153716 6155235–6154445 730–2280 231 [229] [228] 232 [PP_5396]–PP_5398 [PP_5396],PP_5397,PP_5398