mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,765 | C→T | intergenic (+134/‑58) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| RA | 49,903 | T→A | D27E (GAT→GAA) | folA → | type 3 dihydrofolate reductase |
| RA | 49,910 | T→G | W30G (TGG→GGG) | folA → | type 3 dihydrofolate reductase |
| RA | 859,587 | G→A | A164T (GCA→ACA) | fsa → | fructose‑6‑phosphate aldolase |
| MC JC | 1,613,500 | Δ4 bp | coding (124‑127/435 nt) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| RA | 3,632,096 | Δ1 bp | coding (1095/1500 nt) | pitA → | inorganic phosphate transporter PitA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 356981 | 357571 | 591 | 7 [0] | [2] 4 | lacA | galactoside O‑acetyltransferase |
| * | * | ÷ | NZ_CP009273 | 903020 | 903054 | 35 | 3 [2] | [2] 5 | ybjT | SDR family oxidoreductase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 314767 | 129 (3.770) | 33 (0.960) | 23/248 | 0.3 | 20.4% | coding (946/1326 nt) | rclA | reactive chlorine resistance oxidoreductase RclA |
| ? | NZ_CP009273 | = 378046 | NA (NA) | pseudogene (262/264 nt) | BW25113_RS23340 | acetyltransferase | |||||
| * | ? | NZ_CP009273 | 360104 = | 103 (3.010) | 142 (4.150) | 55/248 | 0.0 | 58.0% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | = 1391494 | NA (NA) | 16 (0.470) | 15/246 | 0.7 | 94.2% | intergenic (+145/‑128) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | 1972747 = | 1 (0.030) | intergenic (‑293/‑487) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC | |||||
| * | ? | NZ_CP009273 | = 1972751 | 0 (0.000) | 41 (1.200) | 27/248 | 0.2 | 100% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
| * | ? | NZ_CP009273 | = 2060313 | 4 (0.120) | 3 (0.090) | 3/230 | 2.4 | 44.7% | coding (454/981 nt) | BW25113_RS10415 | IS5‑like element IS5 family transposase |
| ? | NZ_CP009273 | = 2095928 | NA (NA) | coding (429/981 nt) | BW25113_RS10605 | IS5‑like element IS5 family transposase | |||||