mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 310 | (T)9→8 | intergenic (+55/‑27) | thrL → / → thrA | thr operon leader peptide/bifunctional aspartate kinase/homoserine dehydrogenase I |
| RA | 49,765 | C→T | intergenic (+134/‑58) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| RA | 49,903 | T→G | D27E (GAT→GAG) | folA → | type 3 dihydrofolate reductase |
| RA | 49,905 | T→G | L28R (CTC→CGC) | folA → | type 3 dihydrofolate reductase |
| RA | 60,340 | T→C | M3V (ATG→GTG) | rluA ← | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA |
| RA | 130,120 | T→C | D673D (GAT→GAC) | acnB → | bifunctional aconitate hydratase 2/2‑methylisocitrate dehydratase |
| RA | 168,561 | A→G | T205A (ACG→GCG) | fhuB → | Fe(3+)‑hydroxamate ABC transporter permease FhuB |
| RA | 196,898 | T→A | intergenic (+51/‑71) | bamA → / → skp | outer membrane protein assembly factor BamA/molecular chaperone Skp |
| RA | 204,632 | T→C | V1007A (GTC→GCC) | dnaE → | DNA polymerase III subunit alpha |
| RA | 209,618 | A→C | A267A (GCA→GCC) | tilS → | tRNA lysidine(34) synthetase TilS |
| RA | 232,843 | T→C | I97T (ATC→ACC) | dnaQ → | DNA polymerase III subunit epsilon |
| RA | 238,914 | A→C | F293V (TTT→GTT) | fadE ← | acyl‑CoA dehydrogenase FadE |
| RA | 243,919 | A→T | R241W (AGG→TGG) | yafL → | C40 family peptidase |
| RA | 250,930 | A→G | I425T (ATC→ACC) | pepD ← | cytosol nonspecific dipeptidase |
| RA | 251,113 | A→G | I364T (ATC→ACC) | pepD ← | cytosol nonspecific dipeptidase |
| RA | 253,379 | T→C | G122G (GGT→GGC) | frsA → | esterase FrsA |
| RA | 277,390 | T→C | D102G (GAC→GGC) | yagA ← | IS481‑like element ISEc19 family transposase |
| RA | 281,176 | A→T | Q24L (CAG→CTG) | yagG → | MFS transporter |
| RA | 295,216 | G→C | A477G (GCC→GGC) | paoC ← | aldehyde oxidoreductase molybdenum‑binding subunit PaoC |
| RA | 386,451 | T→C | pseudogene (745/1527 nt) | BW25113_RS01915 → | outer membrane autotransporter barrel domain‑containing protein |
| RA | 441,393 | A→C | F244V (TTC→GTC) | yajR ← | MFS transporter |
| RA | 453,695 | G→A | A272T (GCG→ACG) | clpX → | ATP‑dependent protease ATP‑binding subunit ClpX |
| RA | 453,912 | A→G | E344G (GAA→GGA) | clpX → | ATP‑dependent protease ATP‑binding subunit ClpX |
| RA | 469,392 | T→C | L324P (CTC→CCC) | amtB → | ammonium transporter AmtB |
| RA | 475,405 | Δ1 bp | intergenic (‑31/+141) | maa ← / ← hha | maltose O‑acetyltransferase/HHA domain‑containing protein |
| RA | 481,730 | Δ1 bp | coding (514/648 nt) | acrR → | multidrug efflux transporter transcriptional repressor AcrR |
| RA | 485,143 | A→G | D1051G (GAT→GGT) | mscK → | mechanosensitive channel MscK |
| RA | 487,218 | A→C | K117N (AAA→AAC) | apt → | adenine phosphoribosyltransferase |
| RA | 506,540 | T→C | D99G (GAC→GGC) | copA ← | copper‑exporting P‑type ATPase CopA |
| RA | 509,698 | A→C | T84P (ACG→CCG) | cueR → | Cu(I)‑responsive transcriptional regulator |
| RA | 524,350 | T→C | F85F (TTT→TTC) | BW25113_RS24960 → | hypothetical protein |
| RA | 527,133 | A→G | V182A (GTT→GCT) | allS ← | HTH‑type transcriptional activator AllS |
| RA | 552,665 | T→C | E178G (GAA→GGA) | folD ← | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD |
| RA | 572,447 | Δ1 bp | intergenic (‑166/‑407) | BW25113_RS02855 ← / → essD | porin/phage lysis protein EssD |
| RA | 587,628 | A→G | F336S (TTC→TCC) | nrfB ← | cyclic di‑3',5'‑guanylate‑activated glycosyltransferase NrfB |
| RA | 592,602 | C→T | Q6* (CAA→TAA) | cusF → | Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone CusF |
| RA | 634,477 | A→G | E26G (GAA→GGA) | ahpC → | alkyl hydroperoxide reductase subunit C |
| RA | 635,449 | T→C | S81P (TCC→CCC) | ahpF → | alkyl hydroperoxide reductase subunit F |
| RA | 668,149 | A→G | N697N (AAT→AAC) | leuS ← | leucine‑‑tRNA ligase |
| RA | 675,373 | A→G | E137G (GAA→GGA) | ybeU → | DUF1266 domain‑containing protein |
| RA | 678,913 | A→G | intergenic (‑64/+20) | hscC ← / ← rihA | molecular chaperone HscC/pyrimidine‑specific ribonucleoside hydrolase RihA |
| RA | 715,111 | A→G | I269T (ATC→ACC) | speF ← | ornithine decarboxylase SpeF |
| RA | 716,126 | A→G | intergenic (‑210/+48) | speF ← / ← BW25113_RS26090 | ornithine decarboxylase SpeF/leader peptide SpeFL |
| RA | 725,137 | C→A | G33G (GGC→GGA) | rhsC → | rhs element protein RhsC |
| RA | 728,467 | T→C | I1143I (ATT→ATC) | rhsC → | rhs element protein RhsC |
| RA | 736,034 | A→T | I358F (ATC→TTC) | phrB → | deoxyribodipyrimidine photo‑lyase |
| RA | 737,899 | A→G | N38N (AAT→AAC) | dtpD ← | dipeptide permease DtpD |
| RA | 747,264 | T→C | D124G (GAT→GGT) | ybgQ ← | fimbrial biogenesis outer membrane usher protein |
| RA | 753,287 | G→A | S48N (AGC→AAC) | sdhB → | succinate dehydrogenase iron‑sulfur subunit SdhB |
| RA | 757,924 | T→C | L316P (CTG→CCG) | odhB → | 2‑oxoglutarate dehydrogenase complex dihydrolipoyllysine‑residue succinyltransferase |
| RA | 771,555 | A→G | E84G (GAG→GGG) | tolR → | colicin uptake protein TolR |
| RA | 771,797 | A→G | intergenic (+64/‑1) | tolR → / → tolA | colicin uptake protein TolR/cell envelope integrity protein TolA |
| RA | 781,531 | T→C | I148T (ATC→ACC) | aroG → | 3‑deoxy‑7‑phosphoheptulonate synthase AroG |
| RA | 791,624 | T→C | S103P (TCG→CCG) | modB → | molybdate ABC transporter permease subunit |
| RA | 803,404 | A→C | intergenic (‑39/+20) | ybhB ← / ← bioA | kinase inhibitor/adenosylmethionine‑‑8‑amino‑7‑oxononanoate transaminase |
| RA | 832,557 | T→C | S251P (TCC→CCC) | hcxB → | hydroxycarboxylate dehydrogenase HcXB |
| RA | 834,220 | A→G | D148D (GAT→GAC) | ybiX ← | PKHD‑type hydroxylase YbiX |
| RA | 857,539 | T→C | E175G (GAA→GGA) | ybiW ← | glycyl radical protein |
| RA | 858,772 | T→C | I66V (ATT→GTT) | ybiY ← | glycyl‑radical enzyme activating protein |
| RA | 861,316 | T→C | I169V (ATT→GTT) | moeA ← | molybdopterin molybdotransferase MoeA |
| RA | 870,468 | A→G | Q678Q (CAA→CAG) | pdeI → | EAL domain‑containing protein |
| RA | 871,743 | A→G | E318G (GAA→GGA) | dgcI → | GGDEF domain‑containing protein |
| RA | 885,786 | T→G | L81R (CTG→CGG) | ybjM → | inner membrane protein YbjM |
| RA | 900,176 | T→G | V43G (GTT→GGT) | ybjQ → | heavy metal‑binding domain‑containing protein |
| RA | 923,801 | A→G | V284A (GTC→GCC) | cydC ← | cysteine/glutathione ABC transporter ATP‑binding protein/permease CydC |
| RA | 928,200 | T→C | R50R (CGT→CGC) | lrp → | leucine‑responsive transcriptional regulator Lrp |
| RA | 945,384 | (T)5→4 | coding (261/591 nt) | ycaK → | NAD(P)H oxidoreductase |
| RA | 960,653 | T→C | M293T (ATG→ACG) | ycaI → | ComEC family protein |
| RA | 965,365 | T→C | M174T (ATG→ACG) | ycaQ → | winged helix DNA‑binding protein YcaQ |
| RA | 967,323 | Δ1 bp | coding (116/894 nt) | ycbJ → | YcbJ family phosphotransferase |
| RA | 974,173 | T→C | S798P (TCC→CCC) | mukB → | chromosome partition protein MukB |
| RA | 977,344 | A→G | D281G (GAC→GGC) | ldtD → | L,D‑transpeptidase |
| RA | 1,011,464 | T→C | I155V (ATC→GTC) | fabA ← | bifunctional 3‑hydroxydecanoyl‑ACP dehydratase/trans‑2‑decenoyl‑ACP isomerase |
| RA | 1,026,705 | A→C | V57G (GTG→GGG) | yccA ← | FtsH protease modulator YccA |
| RA | 1,056,058 | T→C | I449I (ATT→ATC) | torA → | trimethylamine‑N‑oxide reductase TorA |
| RA | 1,068,442 | A→C | G323G (GGT→GGG) | rutA ← | pyrimidine utilization protein A |
| RA | 1,079,189 | T→C | S120P (TCC→CCC) | efeB → | iron uptake transporter deferrochelatase/peroxidase subunit |
| RA | 1,079,811 | A→C | D327A (GAC→GCC) | efeB → | iron uptake transporter deferrochelatase/peroxidase subunit |
| RA | 1,097,764 | A→G | N78N (AAT→AAC) | csgE ← | curli production assembly/transport protein CsgE |
| RA | 1,124,635 | T→C | R447R (CGT→CGC) | murJ → | murein biosynthesis integral membrane protein MurJ |
| RA | 1,136,234 | A→G | E249G (GAA→GGA) | flgL → | flagellar hook‑associated protein FlgL |
| RA | 1,149,506 | T→C | S251P (TCC→CCC) | pabC → | aminodeoxychorismate lyase |
| RA | 1,156,804 | A→C | G68G (GGT→GGG) | fhuE ← | ferric‑rhodotorulic acid/ferric‑coprogen receptor FhuE |
| RA | 1,161,212 | T→C | intergenic (+71/‑329) | ycfP → / → ndh | alpha/beta hydrolase YcfP/NADH‑quinone dehydrogenase |
| RA | 1,182,954 | T→A | D248V (GAT→GTT) | roxA ← | [50S ribosomal protein L16]‑arginine 3‑hydroxylase |
| RA | 1,187,888 | T→C | E67G (GAA→GGA) | hflD ← | high frequency lysogenization protein HflD |
| RA | 1,200,135 | (A)5→4 | pseudogene (279/1137 nt) | BW25113_RS05965 → | terminase large subunit |
| RA | 1,201,626 | A→G | pseudogene (34/786 nt) | BW25113_RS05980 → | baseplate J/gp47 family protein |
| RA | 1,220,495 | T→A | D108V (GAT→GTT) | minD ← | septum site‑determining protein MinD |
| RA | 1,223,250 | T→C | V27V (GTT→GTC) | BW25113_RS06140 → | YcgL domain‑containing protein |
| RA | 1,235,908 | T→G | A540A (GCA→GCC) | cvrA ← | potassium/proton antiporter |
| RA | 1,246,085 | (C)5→4 | coding (210/1071 nt) | dhaK ← | dihydroxyacetone kinase subunit DhaK |
| RA | 1,251,036 | T→G | T125P (ACA→CCA) | ycgV ← | autotransporter outer membrane beta‑barrel domain‑containing protein |
| RA | 1,260,284 | A→G | D372G (GAC→GGC) | hemA → | glutamyl‑tRNA reductase |
| RA | 1,274,887 | A→G | intergenic (+83/‑433) | narK → / → narG | nitrate transporter NarK/nitrate reductase subunit alpha |
| RA | 1,283,900 | A→G | S61P (TCC→CCC) | purU ← | formyltetrahydrofolate deformylase |
| RA | 1,306,087 | A→G | intergenic (+22/+18) | tonB → / ← yciA | TonB system transport protein TonB/acyl‑CoA thioester hydrolase YciA |
| RA | 1,336,067 | G→A | intergenic (+83/‑111) | lapB → / → pyrF | lipopolysaccharide assembly protein LapB/orotidine‑5'‑phosphate decarboxylase |
| RA | 1,422,040 | A→C | V315G (GTG→GGG) | BW25113_RS07180 ← | IS5‑like element ISKpn26 family transposase |
| RA | 1,449,980 | A→G | D187G (GAT→GGT) | paaC → | phenylacetate‑CoA oxygenase subunit PaaC |
| RA | 1,455,278 | T→G | R43R (CGT→CGG) | paaJ → | bifunctional 3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase |
| RA | 1,461,422 | (G)5→4 | pseudogene (1774/2526 nt) | BW25113_RS07350 → | autotransporter domain‑containing protein |
| RA | 1,492,661 | A→G | M517V (ATG→GTG) | opgD → | glucan biosynthesis protein OpgD |
| RA | 1,503,720 | T→C | intergenic (+1/‑45) | hicA → / → hicB | type II toxin‑antitoxin system mRNA interferase toxin HicA/type II toxin‑antitoxin system antitoxin HicB |
| RA | 1,506,028 | G→A | A40T (GCC→ACC) | ydcS → | ABC transporter substrate‑binding protein |
| RA | 1,507,050 | T→G | G380G (GGT→GGG) | ydcS → | ABC transporter substrate‑binding protein |
| RA | 1,542,720 | A→G | T355A (ACT→GCT) | fdnG → | formate dehydrogenase‑N subunit alpha |
| RA | 1,575,730 | T→C | D351G (GAT→GGT) | ydeN ← | sulfatase |
| RA | 1,578,188 | A→G | I10T (ATC→ACC) | safA ← | two‑component system connector SafA |
| RA | 1,578,845 | A→G | D633D (GAT→GAC) | ydeP ← | acid resistance putative oxidoreductase YdeP |
| RA | 1,580,214 | T→C | D177G (GAC→GGC) | ydeP ← | acid resistance putative oxidoreductase YdeP |
| RA | 1,594,535 | T→C | intergenic (‑69/+10) | lsrK ← / ← lsrR | autoinducer‑2 kinase/transcriptional regulator LsrR |
| RA | 1,599,483 | A→C | D59A (GAT→GCT) | lsrB → | autoinducer 2 ABC transporter substrate‑binding protein LsrB |
| RA | 1,608,701 | C→A | R87L (CGC→CTC) | sad ← | succinate‑semialdehyde dehydrogenase |
| RA | 1,609,438 | T→C | P126P (CCT→CCC) | yneJ → | LysR family transcriptional regulator |
| RA | 1,609,528 | A→C | I156I (ATA→ATC) | yneJ → | LysR family transcriptional regulator |
| RA | 1,613,590 | A→C | T72P (ACC→CCC) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| RA | 1,613,994 | G→A | G55D (GGC→GAC) | marA → | MDR efflux pump AcrAB transcriptional activator MarA |
| RA | 1,622,039 | A→G | E89G (GAG→GGG) | ydfG → | bifunctional NADP‑dependent 3‑hydroxy acid dehydrogenase/3‑hydroxypropionate dehydrogenase YdfG |
| RA | 1,638,057 | A→C | W169G (TGG→GGG) | ydfU ← | DUF968 domain‑containing protein |
| RA | 1,643,588 | T→G | intergenic (+290/‑278) | BW25113_RS08235 → / → dicB | hypothetical protein/cell division inhibition protein DicB |
| RA | 1,645,059 | A→G | pseudogene (725/768 nt) | BW25113_RS23850 → | exonuclease |
| RA | 1,659,452 | (T)7→6 | intergenic (+75/‑84) | dmsD → / → clcB | Tat proofreading chaperone DmsD/voltage‑gated ClC‑type chloride channel ClcB |
| RA | 1,701,793 | A→C | P206P (CCA→CCC) | rsxC → | electron transport complex subunit RsxC |
| RA | 1,707,599 | A→T | I192F (ATC→TTC) | dtpA → | dipeptide/tripeptide permease DtpA |
| RA | 1,708,538 | A→G | intergenic (+10/‑96) | dtpA → / → gstA | dipeptide/tripeptide permease DtpA/glutathione transferase GstA |
| RA | 1,712,188 | T→C | D26G (GAT→GGT) | pdxH ← | pyridoxamine 5'‑phosphate oxidase |
| RA | 1,712,684 | T→C | intergenic (‑32/+66) | mliC ← / ← anmK | C‑type lysozyme inhibitor/anhydro‑N‑acetylmuramic acid kinase |
| RA | 1,718,241 | Δ1 bp | coding (1864/2013 nt) | ydhK → | FUSC family protein |
| RA | 1,727,442 | T→G | F1367V (TTT→GTT) | lhr → | ATP‑dependent helicase |
| RA | 1,732,351 | (A)7→6 | coding (251/1026 nt) | purR → | HTH‑type transcriptional repressor PurR |
| RA | 1,737,390 | T→C | E37G (GAA→GGA) | ribE ← | riboflavin synthase |
| RA | 1,745,340 | +G | coding (633/639 nt) | ydhW ← | YdhW family putative oxidoreductase system protein |
| RA | 1,765,154 | A→G | N95D (AAT→GAT) | ydiL → | YdiL family protein |
| RA | 1,769,436 | A→G | D165G (GAC→GGC) | aroD → | type I 3‑dehydroquinate dehydratase |
| RA | 1,776,037 | T→G | V129G (GTT→GGT) | ydiS → | FAD‑dependent oxidoreductase |
| RA | 1,776,541 | T→G | V297G (GTG→GGG) | ydiS → | FAD‑dependent oxidoreductase |
| RA | 1,801,453 | T→G | V276G (GTT→GGT) | pfkB → | 6‑phosphofructokinase II |
| RA | 1,809,395 | T→G | G424G (GGT→GGG) | katE → | catalase HPII |
| RA | 1,810,989 | A→G | F135S (TTC→TCC) | chbG ← | chitin disaccharide deacetylase |
| RA | 1,834,793 | A→G | D357G (GAT→GGT) | ynjE → | thiosulfate sulfurtransferase YnjE |
| RA | 1,856,434 | A→G | S85P (TCA→CCA) | msrB ← | peptide‑methionine (R)‑S‑oxide reductase MsrB |
| RA | 1,879,784 | T→G | V288G (GTG→GGG) | yeaW → | carnitine monooxygenase subunit YeaW |
| RA | 1,891,886 | Δ1 bp | coding (698/1365 nt) | sdaA → | L‑serine ammonia‑lyase |
| RA | 1,900,350 | A→G | T136A (ACC→GCC) | mntP → | manganese efflux pump MntP |
| RA | 1,932,990 | A→G | E362G (GAA→GGA) | pyk → | pyruvate kinase |
| RA | 1,941,091 | A→G | E195G (GAA→GGA) | yebB → | YebB family permuted papain‑like enzyme |
| RA | 1,955,016 | A→G | D233G (GAC→GGC) | argS → | arginine‑‑tRNA ligase |
| RA | 2,000,880 | A→G | D415G (GAC→GGC) | amyA → | alpha‑amylase |
| RA | 2,030,709 | A→G | S309P (TCG→CCG) | hprS ← | two‑component system sensor histidine kinase HprS |
| RA | 2,037,050 | T→G | intergenic (‑12/‑82) | BW25113_RS10320 ← / → mtfA | tRNA‑Ser/DgsA anti‑repressor MtfA |
| RA | 2,039,724 | A→G | T436A (ACA→GCA) | yeeJ → | inverse autotransporter adhesin YeeJ |
| RA | 2,066,165 | A→G | G382G (GGA→GGG) | agn43 → | autotransporter adhesin Ag43 |
| RA | 2,069,946 | A→G | Y53C (TAT→TGT) | yeeS → | RadC family protein |
| RA | 2,088,811 | T→C | V69A (GTC→GCC) | hisA → | 1‑(5‑phosphoribosyl)‑5‑[(5‑ phosphoribosylamino)methylideneamino]imidazole‑4‑ carboxamide isomerase |
| RA | 2,115,706 | A→G | F252S (TTC→TCC) | cpsG ← | colanic acid biosynthesis phosphomannomutase CpsG |
| RA | 2,135,155 | T→C | N181S (AAC→AGC) | dcd ← | dCTP deaminase |
| RA | 2,136,211 | A→G | D73D (GAT→GAC) | udk ← | uridine kinase |
| RA | 2,179,484 | A→G | E30G (GAA→GGA) | rcnA → | nickel/cobalt efflux protein RcnA |
| RA | 2,184,600 | A→C | G160G (GGT→GGG) | yehC ← | fimbria/pilus periplasmic chaperone |
| RA | 2,201,820 | A→G | K125K (AAA→AAG) | yehP → | VWA domain‑containing protein |
| RA | 2,206,195 | A→G | F83L (TTT→CTT) | btsR ← | two‑component system response regulator BtsR |
| RA | 2,240,933 | A→G | F360S (TTC→TCC) | lysP ← | lysine‑specific permease |
| RA | 2,258,402 | T→A | I354N (ATC→AAC) | setB → | sugar efflux transporter SetB |
| RA | 2,268,854 | A→G | S35G (AGT→GGT) | yejE → | ABC transporter permease |
| RA | 2,287,796 | C→T | L196L (CTG→CTA) | ccmF ← | cytochrome c‑type biogenesis heme lyase CcmF |
| RA | 2,290,049 | A→C | V152G (GTG→GGG) | ccmB ← | heme exporter protein CcmB |
| RA | 2,302,553 | Δ1 bp | coding (268/651 nt) | alkB ← | DNA oxidative demethylase AlkB |
| RA | 2,303,411 | T→C | G158G (GGA→GGG) | ada ← | bifunctional DNA‑binding transcriptional regulator/O6‑methylguanine‑DNA methyltransferase Ada |
| RA | 2,306,184 | T→C | V15V (GTA→GTG) | ompC ← | porin OmpC |
| RA | 2,325,369 | T→G | pseudogene (2423/4515 nt) | BW25113_RS11635 ← | alpha‑2‑macroglobulin family protein |
| RA | 2,345,762 | A→G | F31S (TTC→TCC) | glpT ← | glycerol‑3‑phosphate transporter |
| RA | 2,352,068 | A→C | V86G (GTC→GGC) | yfaU ← | 2‑keto‑3‑deoxy‑L‑rhamnonate aldolase |
| RA | 2,357,677 | A→G | G26G (GGT→GGC) | yfaZ ← | YfaZ family protein |
| RA | 2,370,881 | A→G | V64A (GTC→GCC) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| RA | 2,406,008 | A→G | D22D (GAT→GAC) | yfbU ← | YfbU family protein |
| RA | 2,438,026 | T→C | K69E (AAA→GAA) | epmC ← | elongation factor P hydroxylase |
| RA | 2,453,160 | T→G | K263N (AAA→AAC) | fadI ← | acetyl‑CoA C‑acyltransferase FadI |
| RA | 2,470,023 | A→G | intergenic (+34/+150) | torI → / ← dsdC | response regulator inhibitor TorI/DNA‑binding transcriptional regulator DsdC |
| RA | 2,487,351 | A→G | D177D (GAT→GAC) | yfdX ← | YfdX family protein |
| RA | 2,499,179 | C→T | T311T (ACG→ACA) | ypdF ← | aminopeptidase |
| RA | 2,503,481 | A→G | T125A (ACC→GCC) | yfeO → | ion channel protein |
| RA | 2,521,647 | C→T | G630D (GGC→GAC) | ligA ← | NAD‑dependent DNA ligase LigA |
| RA | 2,525,250 | T→A | F143L (TTT→TTA) | cysZ → | sulfate transporter CysZ |
| RA | 2,537,187 | T→C | intergenic (‑300/+4) | cysP ← / ← ucpA | thiosulfate/sulfate ABC transporter substrate‑binding protein CysP/SDR family oxidoreductase UcpA |
| RA | 2,550,584 | A→G | S25P (TCA→CCA) | eutC ← | ethanolamine ammonia‑lyase subunit beta |
| RA | 2,581,070 | G→A | A39A (GCG→GCA) | acrD → | multidrug efflux RND transporter permease AcrD |
| RA | 2,637,057 | G→A | L196F (CTT→TTT) | rlmN ← | bifunctional tRNA (adenosine(37)‑C2)‑methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN |
| RA | 2,638,870 | T→C | A605A (GCA→GCG) | pbpC ← | peptidoglycan glycosyltransferase PbpC |
| RA | 2,644,099 | T→G | A516A (GCA→GCC) | yfhM ← | alpha2‑macroglobulin |
| RA | 2,646,214 | (G)6→7 | coding (362/846 nt) | sseA → | 3‑mercaptopyruvate sulfurtransferase |
| RA | 2,658,192 | A→C | Q148H (CAA→CAC) | yfhR → | alpha/beta hydrolase |
| RA | 2,666,371 | T→A | D322E (GAT→GAA) | hcaD → | phenylpropionate dioxygenase ferredoxin reductase subunit |
| RA | 2,682,977 | T→C | intergenic (‑112/+53) | qseG ← / ← qseE | two‑component system QseEF‑associated lipoprotein QseG/two component system sensor histidine kinase QseE/GlrK |
| RA | 2,684,806 | T→C | intergenic (‑349/+209) | qseE ← / ← purL | two component system sensor histidine kinase QseE/GlrK/phosphoribosylformylglycinamidine synthase |
| RA | 2,699,422 | A→C | R354R (CGT→CGG) | lepA ← | translation elongation factor 4 |
| RA | 2,745,770 | A→G | E206G (GAG→GGG) | recN → | DNA repair protein RecN |
| RA | 2,772,143 | A→G | S1315P (TCC→CCC) | ypjA ← | adhesin‑like autotransporter YpjA/EhaD |
| RA | 2,813,426 | A→G | Y649H (TAT→CAT) | alaS ← | alanine‑‑tRNA ligase |
| RA | 2,829,895 | A→G | V297A (GTC→GCC) | hypF ← | carbamoyltransferase HypF |
| RA | 2,862,125 | A→G | intergenic (‑13/+127) | nlpD ← / ← pcm | murein hydrolase activator NlpD/protein‑L‑isoaspartate O‑methyltransferase |
| RA | 2,890,306 | T→A | A332A (GCA→GCT) | ygcS ← | MFS transporter |
| RA | 2,891,751 | T→G | T343P (ACC→CCC) | ygcU ← | FAD‑binding oxidoreductase |
| RA | 2,931,836 | A→G | D337G (GAT→GGT) | fucK → | L‑fuculokinase |
| RA | 2,938,251 | T→C | D117D (GAT→GAC) | csdE → | cysteine desulfurase sulfur acceptor subunit CsdE |
| RA | 2,959,152 | A→G | F82S (TTC→TCC) | lgt ← | prolipoprotein diacylglyceryl transferase |
| RA | 3,005,362 | T→C | G181G (GGT→GGC) | arcC → | carbamate kinase |
| RA | 3,024,179 | A→C | F38V (TTT→GTT) | ygfT ← | formate‑dependent uric acid utilization protein YgfT |
| RA | 3,036,314 | A→G | F65S (TTC→TCC) | yqfA ← | hemolysin III family protein |
| RA | 3,071,778 | A→C | G147G (GGT→GGG) | cmtA ← | PTS mannitol transporter subunit IICB |
| RA | 3,148,355 | A→G | S56P (TCC→CCC) | yqhC ← | DNA‑binding transcriptional regulator YqhC |
| RA | 3,155,922 | A→G | V36A (GTT→GCT) | ftsP ← | cell division protein FtsP |
| RA | 3,184,461 | T→C | F157F (TTT→TTC) | yqiI → | fimbrial protein |
| RA | 3,193,900 | A→G | L142P (CTC→CCC) | ygiF ← | inorganic triphosphatase |
| RA | 3,202,275 | T→G | V298G (GTG→GGG) | ttdT → | L‑tartrate/succinate antiporter |
| RA | 3,210,830 | A→C | intergenic (+69/+85) | nfeR → / ← aer | DNA‑binding transcriptional regulator NfeR/aerotaxis sensor receptor Aer |
| RA | 3,232,610 | T→C | I224I (ATT→ATC) | alx → | TerC family membrane protein Alx |
| RA | 3,292,953 | +C | coding (322/444 nt) | yhbP ← | YhbP family protein |
| RA | 3,315,373 | T→C | intergenic (‑401/+58) | yhbX ← / ← BW25113_RS16455 | phosphoethanolamine transferase/tRNA‑Leu |
| RA | 3,326,882 | A→G | intergenic (‑72/‑187) | rplU ← / → ispB | 50S ribosomal protein L21/octaprenyl diphosphate synthase |
| RA | 3,349,491 | T→C | S470P (TCC→CCC) | gltB → | glutamate synthase large subunit |
| RA | 3,437,182 | A→G | I92T (ATC→ACC) | secY ← | preprotein translocase subunit SecY |
| RA | 3,446,256 | A→C | G10G (GGT→GGG) | rplC ← | 50S ribosomal protein L3 |
| RA | 3,479,155 | A→G | V8A (GTC→GCC) | yhfA ← | OsmC family protein |
| RA | 3,516,705 | T→C | I159T (ATC→ACC) | mrcA → | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA |
| RA | 3,526,544 | C→T | A123V (GCT→GTT) | pckA → | phosphoenolpyruvate carboxykinase (ATP) |
| RA | 3,589,221 | A→G | G181G (GGT→GGC) | livH ← | high‑affinity branched‑chain amino acid ABC transporter permease LivH |
| RA | 3,593,877 | T→C | A89A (GCA→GCG) | rpoH ← | RNA polymerase sigma factor RpoH |
| RA | 3,602,485 | A→G | intergenic (‑129/‑92) | tusA ← / → yhhQ | sulfurtransferase TusA/7‑cyano‑7‑deazaguanine/7‑aminomethyl‑7‑ deazaguanine transporter |
| RA | 3,617,742 | A→G | E2G (GAA→GGA) | yhhI → | ISAs1‑like element ISEc1 family transposase |
| RA | 3,836,431 | A→G | V240A (GTC→GCC) | adeQ ← | adenine permease AdeQ |
| RA | 3,841,593 | A→G | F131S (TTC→TCC) | uhpC ← | MFS transporter family glucose‑6‑phosphate receptor UhpC |
| RA | 3,853,103 | A→G | F125S (TTC→TCC) | yidK ← | solute:sodium symporter family transporter |
| RA | 3,873,583 | A→G | S333S (AGT→AGC) | recF ← | DNA replication/repair protein RecF |
| RA | 3,877,538 | A→G | intergenic (+72/‑158) | BW25113_RS25780 → / → rpmH | protein YsdD/50S ribosomal protein L34 |
| RA | 3,882,139 | A→G | E17G (GAG→GGG) | tnaA → | tryptophanase |
| RA | 3,896,219 | A→G | T281T (ACT→ACC) | bglB ← | 6‑phospho‑beta‑glucosidase BglB |
| RA | 3,901,162 | T→C | T189A (ACC→GCC) | pstB ← | phosphate ABC transporter ATP‑binding protein PstB |
| RA | 3,965,761 | A→G | D381G (GAC→GGC) | wecC → | UDP‑N‑acetyl‑D‑mannosamine dehydrogenase |
| RA | 3,981,822 | A→G | I202T (ATC→ACC) | hemX ← | uroporphyrinogen‑III C‑methyltransferase |
| RA | 4,003,978 | A→G | E140G (GAG→GGG) | yigL → | sugar/pyridoxal phosphate phosphatase YigL |
| RA | 4,025,290 | A→C | D257A (GAC→GCC) | pepQ → | Xaa‑Pro dipeptidase |
| RA | 4,052,334 | A→G | I190V (ATT→GTT) | typA → | ribosome‑dependent GTPase TypA |
| RA | 4,057,690 | A→T | intergenic (‑35/+33) | ompL ← / ← yihO | porin OmpL/MFS transporter |
| RA | 4,114,961 | T→C | E593G (GAA→GGA) | priA ← | primosomal protein N' |
| RA | 4,132,297 | T→C | intergenic (‑148/‑161) | ptsP ← / → frwC | phosphoenolpyruvate‑‑protein phosphotransferase/PTS fructose transporter subunit EIIC |
| RA | 4,165,051 | A→C | intergenic (‑97/‑265) | coaA ← / → BW25113_RS20630 | type I pantothenate kinase/tRNA‑Thr |
| RA | 4,167,337 | A→G | K18E (AAG→GAG) | secE → | preprotein translocase subunit SecE |
| RA | 4,172,602 | A→C | E477A (GAG→GCG) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| RA | 4,183,394 | G→C | G37G (GGC→GGG) | thiF ← | thiazole biosynthesis adenylyltransferase ThiF |
| RA | 4,208,503 | T→A | intergenic (+162/‑21) | aceA → / → aceK | isocitrate lyase/bifunctional isocitrate dehydrogenase kinase/phosphatase |
| RA | 4,223,121 | A→G | V14A (GTA→GCA) | lysC ← | lysine‑sensitive aspartokinase 3 |
| RA | 4,235,276 | T→C | N358D (AAC→GAC) | malE ← | maltose/maltodextrin ABC transporter substrate‑binding protein MalE |
| RA | 4,251,021 | A→G | pseudogene (773/986 nt) | BW25113_RS21020 → | DUF2713 domain‑containing protein |
| RA | 4,262,930 | A→T | D290E (GAT→GAA) | uvrA ← | excinuclease ABC subunit UvrA |
| RA | 4,262,978 | (C)5→4 | coding (822/2823 nt) | uvrA ← | excinuclease ABC subunit UvrA |
| RA | 4,264,031 | A→T | intergenic (‑232/‑22) | uvrA ← / → ssb1 | excinuclease ABC subunit UvrA/single‑stranded DNA‑binding protein SSB1 |
| RA | 4,321,803 | T→C | H495H (CAT→CAC) | proP → | glycine betaine/L‑proline transporter ProP |
| RA | 4,359,587 | G→T | R215S (CGT→AGT) | yjeH ← | L‑methionine/branched‑chain amino acid transporter |
| RA | 4,377,323 | T→C | D622G (GAC→GGC) | mscM ← | miniconductance mechanosensitive channel MscM |
| RA | 4,378,349 | T→C | D280G (GAT→GGT) | mscM ← | miniconductance mechanosensitive channel MscM |
| RA | 4,395,910 | 2 bp→CC | intergenic (+108/‑96) | purA → / → nsrR | adenylosuccinate synthase/nitric oxide‑sensing transcriptional repressor NsrR |
| RA | 4,409,650 | T→C | intergenic (‑208/‑147) | ulaG ← / → ulaA | L‑ascorbate 6‑phosphate lactonase/PTS ascorbate transporter subunit IIC |
| RA | 4,428,964 | T→C | E39G (GAG→GGG) | ytfJ ← | YtfJ family protein |
| RA | 4,491,983 | T→C | R428R (AGA→AGG) | insG ← | IS4‑like element IS4 family transposase |
| RA | 4,493,312 | A→G | intergenic (‑46/‑563) | insG ← / → nanX | IS4‑like element IS4 family transposase/MFS transporter |
| RA | 4,501,175 | T→C | I34V (ATC→GTC) | fecE ← | Fe(3+) dicitrate ABC transporter ATP‑binding protein FecE |
| RA | 4,531,167 | G→A | A132T (GCC→ACC) | fimB → | type 1 fimbria switch DNA invertase FimB |
| RA | 4,545,596 | T→C | E181G (GAG→GGG) | yjiC ← | YjfZ/YjiC family protein |
| RA | 4,568,721 | A→G | I145T (ATC→ACC) | mcrB ← | 5‑methylcytosine‑specific restriction endonuclease subunit McrB |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 356981 | 357574 | 594 | 9 [0] | [6] 9 | [lacA] | [lacA] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 118 (2.960) | 48/172 | 0.0 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 3 (0.080) | 52 (1.600) | 33/140 | 0.0 | 95.0% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | 1205075 = | 3 (0.090) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 3 (0.080) | 31 (0.960) | 19/140 | 0.4 | 91.9% | coding (305/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | = 1205058 | 3 (0.090) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||