breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutation | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NZ_CP009273 | 235043 | 235112 | 70 | 7 [6] | [6] 7 | BW25113_RS01095 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 356981 | 357568 | 588 | 17 [0] | [5] 8 | lacA | galactoside O‑acetyltransferase |
* | * | ÷ | NZ_CP009273 | 578902 | 579154 | 253 | 7 [5] | [6] 7 | [appY] | [appY] |
* | * | ÷ | NZ_CP009273 | 716390 | 716533 | 144 | 7 [6] | [5] 10 | [kdpE] | [kdpE] |
* | * | ÷ | NZ_CP009273 | 1164345 | 1164458 | 114 | 8 [6] | [5] 9 | comR/bhsA | TetR family copper‑responsive transcriptional repressor ComR/multiple stress resistance protein BhsA |
* | * | ÷ | NZ_CP009273 | 1431294 | 1431366 | 73 | 7 [6] | [5] 8 | ompN/nifJ | porin OmpN/pyruvate:ferredoxin (flavodoxin) oxidoreductase |
* | * | ÷ | NZ_CP009273 | 1524311 | 1524427 | 117 | 8 [5] | [6] 8 | [BW25113_RS26145] | [BW25113_RS26145] |
* | * | ÷ | NZ_CP009273 | 1807329 | 1807562 | 234 | 8 [6] | [6] 7 | [BW25113_RS09050] | [BW25113_RS09050] |
* | * | ÷ | NZ_CP009273 | 1888048 | 1888129 | 82 | 8 [5] | [6] 12 | yoaB/yoaC | RidA family protein/DUF1889 family protein |
* | * | ÷ | NZ_CP009273 | 1940362 | 1940433 | 72 | 7 [6] | [5] 8 | [yobI] | [yobI] |
* | * | ÷ | NZ_CP009273 | 2027305 | 2027448 | 144 | 7 [6] | [5] 7 | drpB/ompC | cell division protein DrpB/porin OmpC |
* | * | ÷ | NZ_CP009273 | 2767751 | 2767811 | 61 | 10 [0] | [5] 7 | BW25113_RS13770 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2897103 | 2897225 | 123 | 7 [6] | [3] 7 | ygcE/queE | FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE |
* | * | ÷ | NZ_CP009273 | 3262530 | 3262690 | 161 | 7 [6] | [5] 7 | yhaC | YhaC family protein |
* | * | ÷ | NZ_CP009273 | 3751289 | 3751371 | 83 | 8 [6] | [5] 9 | yiaY/selB | L‑threonine dehydrogenase/selenocysteine‑specific translation elongation factor |
* | * | ÷ | NZ_CP009273 | 3792561 | 3792681 | 121 | 8 [6] | [4] 7 | [waaU] | [waaU] |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | 360104 = | NA (NA) | 281 (4.360) | 56/166 | 0.0 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
* | ? | NZ_CP009273 | 1203246 = | 28 (0.430) | 22 (0.420) | 16/134 | 0.9 | 52.0% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
? | NZ_CP009273 | 1205075 = | 18 (0.350) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
* | ? | NZ_CP009273 | = 1203261 | 28 (0.430) | 10 (0.190) | 9/134 | 1.7 | 33.0% | coding (305/630 nt) | BW25113_RS05990 | hypothetical protein |
? | NZ_CP009273 | = 1205058 | 18 (0.350) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
* | ? | NZ_CP009273 | = 1972751 | 13 (0.200) | 16 (0.250) | 7/166 | 2.6 | 55.2% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
* | ? | NZ_CP009273 | 4532499 = | 2 (0.030) | 7 (0.120) | 6/148 | 2.6 | 29.9% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
? | NZ_CP009273 | 4532813 = | 31 (0.540) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |