breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutation | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NZ_CP009273 | 29220 | 29252 | 33 | 2 [1] | [1] 4 | dapB/carA | 4‑hydroxy‑tetrahydrodipicolinate reductase/glutamine‑hydrolyzing carbamoyl‑phosphate synthase small subunit |
* | * | ÷ | NZ_CP009273 | 80514 | 80580 | 67 | 2 [1] | [1] 2 | leuL/leuO | leu operon leader peptide/transcriptional regulator LeuO |
* | * | ÷ | NZ_CP009273 | 81904 | 81931 | 28 | 2 [1] | [1] 3 | leuO/BW25113_RS25405 | transcriptional regulator LeuO/protein YabR |
* | * | ÷ | NZ_CP009273 | 118328 | 118338 | 11 | 3 [1] | [0] 2 | aroP/pdhR | aromatic amino acid transporter AroP/pyruvate dehydrogenase complex transcriptional repressor PdhR |
* | * | ÷ | NZ_CP009273 | 153637 | 153645 | 9 | 2 [0] | [1] 3 | yadN/folK | fimbrial protein/2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine diphosphokinase |
* | * | ÷ | NZ_CP009273 | 233688 | 233750 | 63 | 2 [0] | [1] 2 | BW25113_RS01085/BW25113_RS01090 | tRNA‑Asp/lipoprotein |
* | * | ÷ | NZ_CP009273 | 235007 | 235122 | 116 | 3 [1] | [0] 2 | BW25113_RS01095 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 255904 | 255955 | 52 | 2 [1] | [1] 2 | phoE/proB | phosphoporin PhoE/glutamate 5‑kinase |
* | * | ÷ | NZ_CP009273 | 280871 | 280975 | 105 | 2 [0] | [1] 2 | [yagF] | [yagF] |
* | * | ÷ | NZ_CP009273 | 356978 | 357568 | 591 | 4 [1] | [1] 2 | lacA | galactoside O‑acetyltransferase |
* | * | ÷ | NZ_CP009273 | 385318 | 385407 | 90 | 3 [1] | [1] 3 | hemB/BW25113_RS01915 | porphobilinogen synthase/outer membrane autotransporter barrel domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 396647 | 396709 | 63 | 2 [1] | [1] 3 | [BW25113_RS25915] | [BW25113_RS25915] |
* | * | ÷ | NZ_CP009273 | 518580 | 518609 | 30 | 2 [1] | [1] 2 | ybbP/rhsD | ABC transporter permease/rhs element protein RhsD |
* | * | ÷ | NZ_CP009273 | 524116 | 524232 | 117 | 2 [0] | [1] 3 | BW25113_RS24960 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 564260 | 564316 | 57 | 2 [1] | [0] 2 | [BW25113_RS25485] | [BW25113_RS25485] |
* | * | ÷ | NZ_CP009273 | 578977 | 579078 | 102 | 3 [1] | [1] 3 | BW25113_RS26085/appY | tail fiber assembly protein/DNA‑binding transcriptional activator AppY |
* | * | ÷ | NZ_CP009273 | 647495 | 647583 | 89 | 3 [1] | [1] 2 | citC/dpiB | [citrate (pro‑3S)‑lyase] ligase/sensor histidine kinase DpiB |
* | * | ÷ | NZ_CP009273 | 651724 | 651732 | 9 | 4 [0] | [1] 3 | dcuC/pagP | anaerobic C4‑dicarboxylate transporter DcuC/lipid IV(A) palmitoyltransferase PagP |
* | * | ÷ | NZ_CP009273 | 656861 | 656895 | 35 | 2 [1] | [1] 3 | ybeF/lipB | YbeF family transcriptional regulator/lipoyl(octanoyl) transferase LipB |
* | * | ÷ | NZ_CP009273 | 716369 | 716481 | 113 | 2 [1] | [0] 2 | BW25113_RS26090/kdpE | leader peptide SpeFL/two‑component system response regulator KdpE |
* | * | ÷ | NZ_CP009273 | 724885 | 724896 | 12 | 3 [1] | [1] 2 | ybfA/rhsC | YbfA family protein/rhs element protein RhsC |
* | * | ÷ | NZ_CP009273 | 748526 | 748538 | 13 | 2 [0] | [0] 3 | ybgD/gltA | fimbrial protein/citrate synthase |
* | * | ÷ | NZ_CP009273 | 761148 | 761158 | 11 | 2 [1] | [0] 2 | mngR | mannosyl‑D‑glycerate transport/metabolism system transcriptional repressor MngR |
* | * | ÷ | NZ_CP009273 | 761386 | 761407 | 22 | 2 [1] | [1] 2 | mngR/mngA | mannosyl‑D‑glycerate transport/metabolism system transcriptional repressor MngR/PTS 2‑O‑a‑mannosyl‑D‑glycerate transporter subunit IIABC |
* | * | ÷ | NZ_CP009273 | 766544 | 766554 | 11 | 2 [0] | [0] 2 | mngB/cydA | mannosylglycerate hydrolase/cytochrome ubiquinol oxidase subunit I |
* | * | ÷ | NZ_CP009273 | 982718 | 982736 | 19 | 2 [0] | [1] 2 | ompF/asnS | porin OmpF/asparagine‑‑tRNA ligase |
* | * | ÷ | NZ_CP009273 | 993197 | 993278 | 82 | 2 [0] | [1] 4 | ssuE/elfA | NADPH‑dependent FMN reductase/fimbrial protein |
* | * | ÷ | NZ_CP009273 | 1028369 | 1028400 | 32 | 2 [1] | [1] 2 | hyaA | hydrogenase 1 small subunit |
* | * | ÷ | NZ_CP009273 | 1098944 | 1098980 | 37 | 2 [1] | [1] 2 | csgD/csgB | biofilm master transcriptional regulator CsgD/curli minor subunit CsgB |
* | * | ÷ | NZ_CP009273 | 1103885 | 1103927 | 43 | 2 [1] | [1] 2 | mdoC | glucans biosynthesis protein MdoC |
* | * | ÷ | NZ_CP009273 | 1114571 | 1114640 | 70 | 2 [1] | [1] 3 | yceJ/BW25113_RS05515 | cytochrome b/YceO family protein |
* | * | ÷ | NZ_CP009273 | 1193088 | 1193094 | 7 | 4 [0] | [1] 3 | BW25113_RS05920 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 1205761 | 1205828 | 68 | 2 [0] | [1] 3 | [mcrA] | [mcrA] |
* | * | ÷ | NZ_CP009273 | 1207491 | 1207622 | 132 | 3 [1] | [1] 5 | iraM/BW25113_RS25985 | anti‑adapter protein IraM/protein YmgK |
* | * | ÷ | NZ_CP009273 | 1251678 | 1251683 | 6 | 2 [0] | [0] 2 | ycgV/ychF | autotransporter outer membrane beta‑barrel domain‑containing protein/redox‑regulated ATPase YchF |
* | * | ÷ | NZ_CP009273 | 1274916 | 1274943 | 28 | 6 [1] | [0] 5 | narK/narG | nitrate transporter NarK/nitrate reductase subunit alpha |
* | * | ÷ | NZ_CP009273 | 1320828 | 1320881 | 54 | 2 [1] | [1] 3 | yciQ | DUF2207 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1389950 | 1390015 | 66 | 3 [1] | [1] 2 | ynaI | low conductance mechanosensitive channel YnaI |
* | * | ÷ | NZ_CP009273 | 1459356 | 1459470 | 115 | 2 [1] | [0] 2 | [BW25113_RS25580] | [BW25113_RS25580] |
* | * | ÷ | NZ_CP009273 | 1459506 | 1459534 | 29 | 2 [0] | [1] 2 | BW25113_RS25580/BW25113_RS07350 | hypothetical protein/autotransporter domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1524310 | 1524430 | 121 | 2 [1] | [1] 3 | [BW25113_RS26145] | [BW25113_RS26145] |
* | * | ÷ | NZ_CP009273 | 1539063 | 1539094 | 32 | 3 [1] | [1] 3 | BW25113_RS07710 | leucine‑rich repeat domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1540372 | 1540510 | 139 | 2 [1] | [1] 3 | yddL/yddG | porin/aromatic amino acid efflux DMT transporter YddG |
* | * | ÷ | NZ_CP009273 | 1577072 | 1577109 | 38 | 2 [0] | [1] 2 | ydeN/ydeO | sulfatase/acid stress response transcriptional regulator YdeO |
* | * | ÷ | NZ_CP009273 | 1618916 | 1618970 | 55 | 3 [1] | [1] 2 | ydeI/ydeJ | YdeI family stress tolerance OB fold protein/2‑oxo‑tetronate isomerase |
* | * | ÷ | NZ_CP009273 | 1631953 | 1632041 | 89 | 2 [0] | [0] 2 | [gnsB] | [gnsB] |
* | * | ÷ | NZ_CP009273 | 1634988 | 1635037 | 50 | 2 [0] | [1] 4 | essD/ynfU | phage lysis protein EssD/putative zinc‑binding protein YnfU |
* | * | ÷ | NZ_CP009273 | 1635248 | 1635285 | 38 | 2 [1] | [0] 5 | ynfU/cspB | putative zinc‑binding protein YnfU/cold shock‑like protein CspB |
* | * | ÷ | NZ_CP009273 | 1744842 | 1744852 | 11 | 2 [0] | [1] 8 | ydhX | 4Fe‑4S dicluster domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1748982 | 1749063 | 82 | 2 [0] | [0] 2 | ydhY/fumD | ferredoxin‑like protein/fumarate hydratase FumD |
* | * | ÷ | NZ_CP009273 | 1783818 | 1783881 | 64 | 2 [0] | [1] 2 | [hemP] | [hemP] |
* | * | ÷ | NZ_CP009273 | 1807424 | 1807434 | 11 | 2 [0] | [0] 2 | BW25113_RS09050/cedA | hypothetical protein/cell division activator CedA |
* | * | ÷ | NZ_CP009273 | 1807508 | 1807566 | 59 | 3 [1] | [1] 2 | BW25113_RS09050/cedA | hypothetical protein/cell division activator CedA |
* | * | ÷ | NZ_CP009273 | 1839104 | 1839148 | 45 | 3 [1] | [0] 5 | [ynjI] | [ynjI] |
* | * | ÷ | NZ_CP009273 | 1888062 | 1888129 | 68 | 2 [1] | [1] 2 | yoaB/yoaC | RidA family protein/DUF1889 family protein |
* | * | ÷ | NZ_CP009273 | 1896179 | 1896205 | 27 | 2 [1] | [1] 2 | yoaE/manX | CNNM family cation transport protein YoaE/PTS mannose transporter subunit IIAB |
* | * | ÷ | NZ_CP009273 | 1940370 | 1940482 | 113 | 3 [0] | [0] 2 | yobI | yobI |
* | * | ÷ | NZ_CP009273 | 1960207 | 1960245 | 39 | 2 [1] | [0] 3 | flhB | flagellar biosynthesis protein FlhB |
* | * | ÷ | NZ_CP009273 | 1973036 | 1973128 | 93 | 2 [1] | [1] 2 | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
* | * | ÷ | NZ_CP009273 | 2004728 | 2004760 | 33 | 4 [0] | [0] 2 | BW25113_RS10120 | DUF5503 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 2004810 | 2004874 | 65 | 2 [0] | [1] 2 | BW25113_RS10120 | DUF5503 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 2027317 | 2027439 | 123 | 3 [0] | [1] 3 | drpB/ompC | cell division protein DrpB/porin OmpC |
* | * | ÷ | NZ_CP009273 | 2050181 | 2050275 | 95 | 2 [0] | [1] 2 | amn/yeeN | AMP nucleosidase/YebC/PmpR family DNA‑binding transcriptional regulator |
* | * | ÷ | NZ_CP009273 | 2051048 | 2051126 | 79 | 4 [1] | [0] 2 | [yeeN] | [yeeN] |
* | * | ÷ | NZ_CP009273 | 2062007 | 2062107 | 101 | 2 [1] | [1] 2 | BW25113_RS10415/BW25113_RS24005 | IS5‑like element IS5 family transposase/TonB‑dependent receptor plug domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 2093216 | 2093256 | 41 | 3 [1] | [1] 4 | ugd/gndA | UDP‑glucose 6‑dehydrogenase/NADP‑dependent phosphogluconate dehydrogenase |
* | * | ÷ | NZ_CP009273 | 2096869 | 2096933 | 65 | 2 [1] | [1] 2 | [wbbL]–[wbbK] | [wbbL],[wbbK] |
* | * | ÷ | NZ_CP009273 | 2097481 | 2097592 | 112 | 2 [1] | [1] 3 | wbbK | glycosyltransferase family 1 protein |
* | * | ÷ | NZ_CP009273 | 2099582 | 2099701 | 120 | 2 [1] | [1] 5 | wzy | O16 family O‑antigen polymerase |
* | * | ÷ | NZ_CP009273 | 2100166 | 2100168 | 3 | 4 [0] | [0] 2 | wzy | O16 family O‑antigen polymerase |
* | * | ÷ | NZ_CP009273 | 2101599 | 2101651 | 53 | 3 [1] | [1] 2 | glf | UDP‑galactopyranose mutase |
* | * | ÷ | NZ_CP009273 | 2144493 | 2144532 | 40 | 2 [0] | [1] 2 | yegI/yegJ | protein kinase YegI/DUF2314 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 2144680 | 2144684 | 5 | 3 [0] | [0] 2 | yegJ | DUF2314 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 2243117 | 2243166 | 50 | 2 [1] | [0] 7 | yeiE/yeiH | DNA‑binding transcriptional regulator YeiE/YeiH family protein |
* | * | ÷ | NZ_CP009273 | 2300310 | 2300368 | 59 | 2 [0] | [1] 3 | mqo/yojI | malate dehydrogenase (quinone)/microcin J25 efflux ABC transporter YojI |
* | * | ÷ | NZ_CP009273 | 2337814 | 2337854 | 41 | 2 [1] | [1] 2 | yfaL/nrdA | AIDA‑I family autotransporter adhesin YfaL/EhaC/ribonucleoside‑diphosphate reductase subunit alpha |
* | * | ÷ | NZ_CP009273 | 2359242 | 2359311 | 70 | 2 [1] | [1] 3 | ais/arnB | lipopolysaccharide core heptose(II)‑phosphate phosphatase Ais/UDP‑4‑amino‑4‑deoxy‑L‑arabinose aminotransferase |
* | * | ÷ | NZ_CP009273 | 2449328 | 2449455 | 128 | 3 [1] | [1] 2 | yfcV/sixA | fimbrial protein/phosphohistidine phosphatase SixA |
* | * | ÷ | NZ_CP009273 | 2457525 | 2457669 | 145 | 2 [0] | [1] 3 | [BW25113_RS12235] | [BW25113_RS12235] |
* | * | ÷ | NZ_CP009273 | 2462831 | 2462834 | 4 | 2 [0] | [0] 2 | BW25113_RS12270 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2462883 | 2462926 | 44 | 2 [0] | [0] 2 | BW25113_RS12270 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2463180 | 2463190 | 11 | 2 [0] | [0] 3 | BW25113_RS12270 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2463616 | 2463763 | 148 | 2 [1] | [1] 2 | BW25113_RS12270 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2569341 | 2569354 | 14 | 2 [0] | [1] 2 | eutS/maeB | ethanolamine utilization microcompartment protein EutS/NADP‑dependent oxaloacetate‑decarboxylating malate dehydrogenase |
* | * | ÷ | NZ_CP009273 | 2689220 | 2689236 | 17 | 3 [1] | [1] 2 | mltF | membrane‑bound lytic murein transglycosylase MltF |
* | * | ÷ | NZ_CP009273 | 2753644 | 2753740 | 97 | 2 [1] | [0] 2 | yfjI | YfjI family protein |
* | * | ÷ | NZ_CP009273 | 2767749 | 2767759 | 11 | 2 [0] | [1] 2 | BW25113_RS13770 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2768349 | 2768353 | 5 | 2 [0] | [0] 2 | BW25113_RS13770 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2778555 | 2778573 | 19 | 2 [0] | [1] 4 | BW25113_RS25705/BW25113_RS13825 | DUF5507 domain‑containing protein/tRNA‑Ile |
* | * | ÷ | NZ_CP009273 | 2779832 | 2779867 | 36 | 2 [1] | [0] 2 | BW25113_RS26005 | alpha‑amylase family glycosyl hydrolase |
* | * | ÷ | NZ_CP009273 | 2877640 | 2877695 | 56 | 3 [1] | [0] 3 | casA/cas3 | type I‑E CRISPR‑associated protein Cse1/CasA/CRISPR‑associated helicase/endonuclease Cas3 |
* | * | ÷ | NZ_CP009273 | 2877738 | 2877791 | 54 | 3 [1] | [1] 2 | casA/cas3 | type I‑E CRISPR‑associated protein Cse1/CasA/CRISPR‑associated helicase/endonuclease Cas3 |
* | * | ÷ | NZ_CP009273 | 2897143 | 2897225 | 83 | 2 [1] | [1] 3 | ygcE/queE | FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE |
* | * | ÷ | NZ_CP009273 | 2975685 | 2975705 | 21 | 2 [1] | [0] 2 | araE/kduD | arabinose‑proton symporter AraE/2‑dehydro‑3‑deoxy‑D‑gluconate 5‑dehydrogenase KduD |
* | * | ÷ | NZ_CP009273 | 2984546 | 2984609 | 64 | 2 [0] | [1] 3 | BW25113_RS14825/ygeG | hypothetical protein/tetratricopeptide repeat protein |
* | * | ÷ | NZ_CP009273 | 2988511 | 2988618 | 108 | 2 [0] | [0] 3 | BW25113_RS14850/BW25113_RS26010 | response regulator transcription factor/hypothetical protein |
* | * | ÷ | NZ_CP009273 | 3072870 | 3072902 | 33 | 2 [1] | [0] 2 | cmtB/tkt | PTS mannitol transporter subunit IIA/transketolase |
* | * | ÷ | NZ_CP009273 | 3127428 | 3127475 | 48 | 3 [0] | [0] 2 | yghS/yghT | dTMP kinase/dTMP kinase |
* | * | ÷ | NZ_CP009273 | 3129928 | 3129962 | 35 | 2 [0] | [1] 2 | pitB/gss | inorganic phosphate transporter PitB/bifunctional glutathionylspermidine amidase/synthase |
* | * | ÷ | NZ_CP009273 | 3165523 | 3165533 | 11 | 2 [0] | [1] 4 | ygiZ | DUF2645 family protein |
* | * | ÷ | NZ_CP009273 | 3260759 | 3260759 | 1 | 2 [0] | [0] 2 | tdcR | transcriptional activator TdcR |
* | * | ÷ | NZ_CP009273 | 3262291 | 3262301 | 11 | 2 [0] | [0] 3 | yhaC | YhaC family protein |
* | * | ÷ | NZ_CP009273 | 3280613 | 3280680 | 68 | 3 [1] | [0] 2 | agaI/yraH | galactosamine‑6‑phosphate isomerase/fimbrial protein |
* | * | ÷ | NZ_CP009273 | 3354473 | 3354481 | 9 | 2 [0] | [1] 2 | gltD/gltF | glutamate synthase subunit GltD/DUF1120 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 3378722 | 3378776 | 55 | 3 [1] | [1] 3 | argR/yhcN | transcriptional regulator ArgR/peroxide/acid stress response protein YhcN |
* | * | ÷ | NZ_CP009273 | 3448830 | 3448903 | 74 | 3 [1] | [0] 2 | gspA/gspC | type II secretion system protein GspA/type II secretion system protein GspC |
* | * | ÷ | NZ_CP009273 | 3575106 | 3575136 | 31 | 2 [0] | [0] 3 | yhhY/hcp | N‑acetyltransferase/Hcp1 family type VI secretion system effector |
* | * | ÷ | NZ_CP009273 | 3575462 | 3575536 | 75 | 2 [1] | [0] 2 | hcp | Hcp1 family type VI secretion system effector |
* | * | ÷ | NZ_CP009273 | 3576022 | 3576022 | 1 | 2 [0] | [0] 3 | hcp | Hcp1 family type VI secretion system effector |
* | * | ÷ | NZ_CP009273 | 3576413 | 3576548 | 136 | 2 [1] | [1] 2 | BW25113_RS17825 | YrhA family protein |
* | * | ÷ | NZ_CP009273 | 3790378 | 3790413 | 36 | 2 [1] | [1] 2 | waaL | O‑antigen ligase |
* | * | ÷ | NZ_CP009273 | 3792569 | 3792642 | 74 | 2 [0] | [0] 2 | waaU | glycosyltransferase family 9 protein |
* | * | ÷ | NZ_CP009273 | 3792729 | 3792779 | 51 | 4 [0] | [1] 3 | waaZ | 3‑deoxy‑D‑manno‑oct‑2‑ulosonate III transferase WaaZ |
* | * | ÷ | NZ_CP009273 | 3797730 | 3797732 | 3 | 3 [0] | [0] 2 | rfaS | LPS core biosynthesis protein RfaS |
* | * | ÷ | NZ_CP009273 | 3797774 | 3797831 | 58 | 2 [0] | [1] 2 | rfaS | LPS core biosynthesis protein RfaS |
* | * | ÷ | NZ_CP009273 | 3798196 | 3798240 | 45 | 3 [1] | [1] 3 | rfaS | LPS core biosynthesis protein RfaS |
* | * | ÷ | NZ_CP009273 | 3943538 | 3943585 | 48 | 4 [0] | [1] 3 | yifB/ilvL | YifB family Mg chelatase‑like AAA ATPase/ilv operon leader peptide |
* | * | ÷ | NZ_CP009273 | 3979448 | 3979479 | 32 | 2 [1] | [0] 2 | aslA/hemY | arylsulfatase AslA/protoheme IX biogenesis protein HemY |
* | * | ÷ | NZ_CP009273 | 4037441 | 4037473 | 33 | 3 [1] | [0] 4 | dsbA/yihF | thiol:disulfide interchange protein DsbA/YdgA family protein |
* | * | ÷ | NZ_CP009273 | 4250280 | 4250307 | 28 | 3 [1] | [0] 2 | BW25113_RS21020 | DUF2713 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 4296625 | 4296633 | 9 | 2 [1] | [0] 4 | yjcS/alsK | alkyl sulfatase YjcS/allose kinase |
* | * | ÷ | NZ_CP009273 | 4302908 | 4302954 | 47 | 2 [1] | [1] 2 | alsR/rpiB | als operon DNA‑binding transcriptional repressor AlsR/bifunctional allose‑6‑phosphate isomerase/ribose‑5‑phosphate isomerase RpiB |
* | * | ÷ | NZ_CP009273 | 4316819 | 4316830 | 12 | 3 [0] | [0] 2 | yjdM/crfC | zinc ribbon domain‑containing protein YjdM/clamp‑binding protein CrfC |
* | * | ÷ | NZ_CP009273 | 4327851 | 4327896 | 46 | 2 [1] | [1] 2 | adiY/adiA | DNA‑binding transcriptional activator AdiY/arginine decarboxylase |
* | * | ÷ | NZ_CP009273 | 4330444 | 4330487 | 44 | 3 [1] | [1] 2 | adiA/melR | arginine decarboxylase/transcriptional regulator MelR |
* | * | ÷ | NZ_CP009273 | 4364119 | 4364158 | 40 | 3 [1] | [0] 2 | yjeJ/epmB | YjeJ family protein/EF‑P beta‑lysylation protein EpmB |
* | * | ÷ | NZ_CP009273 | 4427367 | 4427391 | 25 | 6 [1] | [0] 2 | cysQ/BW25113_RS21900 | 3'(2'),5'‑bisphosphate nucleotidase CysQ/hypothetical protein |
* | * | ÷ | NZ_CP009273 | 4466797 | 4466899 | 103 | 2 [1] | [0] 2 | BW25113_RS22080 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 4487817 | 4487841 | 25 | 2 [1] | [1] 2 | BW25113_RS22170/BW25113_RS22180 | tyrosine‑type recombinase/integrase/IS3‑like element IS2 family transposase |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | 360104 = | NA (NA) | 24 (1.200) | 15/166 | 0.3 | 64.9% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
? | NZ_CP009273 | = 360286 | 13 (0.650) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
* | ? | NZ_CP009273 | = 1203261 | 10 (0.500) | 5 (0.310) | 5/134 | 1.0 | 35.6% | coding (305/630 nt) | BW25113_RS05990 | hypothetical protein |
? | NZ_CP009273 | = 1205058 | 10 (0.620) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein |