breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
MC JC 2,399,465 Δ7 bp coding (650‑656/939 nt) lrhA ← transcriptional regulator LrhA
RA 4,267,830 G→A G145D (GGC→GAC)  soxR → redox‑sensitive transcriptional activator SoxR

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 29220 29252 33 2 [1] [0] 2 dapB/carA 4‑hydroxy‑tetrahydrodipicolinate reductase/glutamine‑hydrolyzing carbamoyl‑phosphate synthase small subunit
* * ÷ NZ_CP009273 41995 42018 24 2 [0] [0] 2 caiT/fixA L‑carnitine/gamma‑butyrobetaine antiporter/electron transfer flavoprotein FixA
* * ÷ NZ_CP009273 80516 80592 77 2 [0] [0] 2 leuL/leuO leu operon leader peptide/transcriptional regulator LeuO
* * ÷ NZ_CP009273 153516 153742 227 2 [1] [1] 3 [folK] [folK]
* * ÷ NZ_CP009273 230589 230604 16 2 [1] [0] 2 gloB hydroxyacylglutathione hydrolase
* * ÷ NZ_CP009273 233675 233744 70 2 [1] [0] 2 BW25113_RS01085/BW25113_RS01090 tRNA‑Asp/lipoprotein
* * ÷ NZ_CP009273 234967 235058 92 2 [1] [0] 2 BW25113_RS01095 hypothetical protein
* * ÷ NZ_CP009273 237286 237303 18 2 [1] [1] 2 ivy Ivy family C‑type lysozyme inhibitor
* * ÷ NZ_CP009273 243099 243129 31 2 [0] [1] 4 dinJ/yafL type II toxin‑antitoxin system antitoxin DinJ/C40 family peptidase
* * ÷ NZ_CP009273 248455 248465 11 2 [0] [1] 4 dinB/yafN DNA polymerase IV/type I toxin‑antitoxin system antitoxin YafN
* * ÷ NZ_CP009273 249823 249831 9 2 [1] [0] 2 yafP/BW25113_RS01190 GNAT family N‑acetyltransferase/RtcB family protein
* * ÷ NZ_CP009273 255892 255959 68 2 [1] [1] 4 phoE/proB phosphoporin PhoE/glutamate 5‑kinase
* * ÷ NZ_CP009273 280873 280971 99 3 [1] [0] 2 [yagF] [yagF]
* * ÷ NZ_CP009273 290235 290268 34 2 [0] [1] 5 BW25113_RS01425 hypothetical protein
* * ÷ NZ_CP009273 356969 357576 608 2 [1] [1] 2 [lacA] [lacA]
* * ÷ NZ_CP009273 380320 380383 64 2 [0] [0] 2 BW25113_RS01880/tauA PIG‑L family deacetylase/taurine ABC transporter substrate‑binding protein
* * ÷ NZ_CP009273 380423 380458 36 2 [0] [0] 3 BW25113_RS01880/tauA PIG‑L family deacetylase/taurine ABC transporter substrate‑binding protein
* * ÷ NZ_CP009273 385319 385360 42 2 [1] [1] 3 hemB/BW25113_RS01915 porphobilinogen synthase/outer membrane autotransporter barrel domain‑containing protein
* * ÷ NZ_CP009273 385397 385447 51 3 [1] [0] 2 hemB/BW25113_RS01915 porphobilinogen synthase/outer membrane autotransporter barrel domain‑containing protein
* * ÷ NZ_CP009273 396578 396680 103 7 [1] [1] 3 [BW25113_RS25915] [BW25113_RS25915]
* * ÷ NZ_CP009273 403980 403990 11 4 [0] [0] 2 ppnP/BW25113_RS02035 pyrimidine/purine nucleoside phosphorylase/DUF2773 domain‑containing protein
* * ÷ NZ_CP009273 447292 447311 20 2 [1] [1] 2 cyoA/ampG cytochrome o ubiquinol oxidase subunit II/muropeptide MFS transporter AmpG
* * ÷ NZ_CP009273 463827 463837 11 2 [0] [1] 3 cof/decR HMP‑PP phosphatase/DNA‑binding transcriptional regulator DecR
* * ÷ NZ_CP009273 475470 475510 41 2 [1] [1] 2 maa/hha maltose O‑acetyltransferase/HHA domain‑containing protein
* * ÷ NZ_CP009273 476545 476605 61 2 [0] [0] 7 tomB/acrB Hha toxicity modulator TomB/efflux RND transporter permease AcrB
* * ÷ NZ_CP009273 518450 518504 55 2 [0] [0] 2 ybbP/rhsD ABC transporter permease/rhs element protein RhsD
* * ÷ NZ_CP009273 518587 518682 96 2 [0] [1] 2 ybbP/rhsD ABC transporter permease/rhs element protein RhsD
* * ÷ NZ_CP009273 523020 523112 93 2 [0] [1] 2 [ybbC] [ybbC]
* * ÷ NZ_CP009273 523344 523383 40 3 [1] [1] 2 ybbC YbbC/YhhH family protein
* * ÷ NZ_CP009273 524124 524200 77 3 [1] [1] 3 BW25113_RS24960 hypothetical protein
* * ÷ NZ_CP009273 524303 524344 42 2 [0] [1] 2 BW25113_RS24960 hypothetical protein
* * ÷ NZ_CP009273 541988 542010 23 4 [0] [1] 2 allD/fdrA ureidoglycolate dehydrogenase/acyl‑CoA synthetase FdrA
* * ÷ NZ_CP009273 553523 553576 54 2 [1] [0] 2 folD/fimA bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD/type 1 fimbrial major subunit FimA
* * ÷ NZ_CP009273 553622 553669 48 2 [0] [1] 3 [fimA] [fimA]
* * ÷ NZ_CP009273 554180 554209 30 3 [1] [0] 2 fimA type 1 fimbrial major subunit FimA
* * ÷ NZ_CP009273 559290 559310 21 2 [0] [1] 3 [sfmF]–[fimZ] [sfmF],[fimZ]
* * ÷ NZ_CP009273 564125 564327 203 2 [1] [1] 5 BW25113_RS25485 BW25113_RS25485
* * ÷ NZ_CP009273 565405 565535 131 2 [1] [0] 2 ybcK recombinase family protein
* * ÷ NZ_CP009273 566296 566330 35 5 [1] [1] 3 ybcK/ybcL recombinase family protein/Raf kinase inhibitor‑like protein YbcL
* * ÷ NZ_CP009273 567059 567077 19 3 [0] [0] 2 ybcM helix‑turn‑helix transcriptional regulator
* * ÷ NZ_CP009273 567365 567381 17 2 [1] [0] 2 ybcM helix‑turn‑helix transcriptional regulator
* * ÷ NZ_CP009273 574422 574454 33 2 [1] [0] 4 bor/ybcV serum resistance lipoprotein Bor/DUF1398 domain‑containing protein
* * ÷ NZ_CP009273 574703 574706 4 2 [0] [0] 3 ybcV DUF1398 domain‑containing protein
* * ÷ NZ_CP009273 576175 576184 10 3 [1] [0] 2 ylcI/nohD YlcI/YnfO family protein/DNA‑packaging protein
* * ÷ NZ_CP009273 578270 578283 14 2 [0] [0] 2 [BW25113_RS02910] [BW25113_RS02910]
* * ÷ NZ_CP009273 578673 578683 11 3 [1] [0] 2 BW25113_RS26085/appY tail fiber assembly protein/DNA‑binding transcriptional activator AppY
* * ÷ NZ_CP009273 578762 578874 113 2 [0] [1] 3 BW25113_RS26085/appY tail fiber assembly protein/DNA‑binding transcriptional activator AppY
* * ÷ NZ_CP009273 578930 578989 60 3 [1] [1] 3 BW25113_RS26085/appY tail fiber assembly protein/DNA‑binding transcriptional activator AppY
* * ÷ NZ_CP009273 579043 579106 64 2 [0] [1] 3 BW25113_RS26085/appY tail fiber assembly protein/DNA‑binding transcriptional activator AppY
* * ÷ NZ_CP009273 579165 579194 30 2 [0] [0] 2 appY DNA‑binding transcriptional activator AppY
* * ÷ NZ_CP009273 579521 579582 62 2 [1] [1] 3 appY DNA‑binding transcriptional activator AppY
* * ÷ NZ_CP009273 579890 579927 38 2 [0] [0] 2 appY/ompT DNA‑binding transcriptional activator AppY/omptin family outer membrane protease OmpT
* * ÷ NZ_CP009273 608122 608149 28 2 [1] [0] 2 fepA/fes siderophore enterobactin receptor FepA/enterochelin esterase
* * ÷ NZ_CP009273 632261 632325 65 2 [0] [0] 2 ybdO LysR family transcriptional regulator
* * ÷ NZ_CP009273 633116 633158 43 2 [0] [1] 3 ybdO/dsbG LysR family transcriptional regulator/thiol:disulfide interchange protein DsbG
* * ÷ NZ_CP009273 647582 647632 51 2 [1] [0] 2 citC/dpiB [citrate (pro‑3S)‑lyase] ligase/sensor histidine kinase DpiB
* * ÷ NZ_CP009273 652575 652598 24 2 [1] [0] 2 pagP/cspE lipid IV(A) palmitoyltransferase PagP/transcription antiterminator/RNA stability regulator CspE
* * ÷ NZ_CP009273 656846 656903 58 2 [0] [1] 4 ybeF/lipB YbeF family transcriptional regulator/lipoyl(octanoyl) transferase LipB
* * ÷ NZ_CP009273 672161 672171 11 2 [0] [1] 2 [ybeR] [ybeR]
* * ÷ NZ_CP009273 678738 678743 6 2 [0] [1] 3 hscC molecular chaperone HscC
* * ÷ NZ_CP009273 703470 703526 57 2 [1] [1] 3 glnS/chiP glutamine‑‑tRNA ligase/chitoporin
* * ÷ NZ_CP009273 716384 716412 29 2 [1] [0] 2 BW25113_RS26090/kdpE leader peptide SpeFL/two‑component system response regulator KdpE
* * ÷ NZ_CP009273 716509 716526 18 2 [0] [0] 2 [kdpE] [kdpE]
* * ÷ NZ_CP009273 729464 729477 14 2 [0] [0] 2 BW25113_RS03630 hypothetical protein
* * ÷ NZ_CP009273 731634 731744 111 3 [1] [0] 2 [BW25113_RS03640] [BW25113_RS03640]
* * ÷ NZ_CP009273 731782 731815 34 2 [0] [0] 2 BW25113_RS03640/ybfQ hypothetical protein/ISAs1 family transposase
* * ÷ NZ_CP009273 731856 731891–731878 23–36 2 [0] [1] 3 BW25113_RS03640/ybfQ hypothetical protein/ISAs1 family transposase
* * ÷ NZ_CP009273 748309 748376 68 2 [0] [0] 2 ybgD/gltA fimbrial protein/citrate synthase
* * ÷ NZ_CP009273 748506 748602 97 2 [0] [0] 3 ybgD/gltA fimbrial protein/citrate synthase
* * ÷ NZ_CP009273 750287 750322 36 3 [1] [1] 3 BW25113_RS25495/sdhC hypothetical protein/succinate dehydrogenase cytochrome b556 subunit
* * ÷ NZ_CP009273 761360 761410 51 2 [1] [1] 4 mngR/mngA mannosyl‑D‑glycerate transport/metabolism system transcriptional repressor MngR/PTS 2‑O‑a‑mannosyl‑D‑glycerate transporter subunit IIABC
* * ÷ NZ_CP009273 766519 766559 41 2 [1] [0] 2 mngB/cydA mannosylglycerate hydrolase/cytochrome ubiquinol oxidase subunit I
* * ÷ NZ_CP009273 816194 816228 35 2 [1] [1] 2 ybhL/ybhM Bax inhibitor‑1/YccA family protein/Bax inhibitor‑1/YccA family protein
* * ÷ NZ_CP009273 844514 844595 82 3 [1] [1] 3 dps/rhtA DNA starvation/stationary phase protection protein Dps/threonine/homoserine exporter RhtA
* * ÷ NZ_CP009273 869141 869180 40 3 [1] [0] 3 pdeI EAL domain‑containing protein
* * ÷ NZ_CP009273 896133 896170 38 2 [0] [1] 5 artJ/artM ABC transporter substrate‑binding protein ArtJ/arginine ABC transporter permease ArtM
* * ÷ NZ_CP009273 902983 903053 71 2 [1] [1] 2 ybjT SDR family oxidoreductase
* * ÷ NZ_CP009273 909277 909300 24 2 [1] [1] 2 hcp/lysO hydroxylamine reductase/L‑lysine exporter LysO
* * ÷ NZ_CP009273 950054 950110 57 3 [1] [1] 3 focA/ycaO formate transporter FocA/30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
* * ÷ NZ_CP009273 955675 955706 32 2 [1] [0] 2 aroA/ycaL 3‑phosphoshikimate 1‑carboxyvinyltransferase/metallopeptidase YcaL
* * ÷ NZ_CP009273 982640 982789 150 2 [1] [1] 3 ompF/asnS porin OmpF/asparagine‑‑tRNA ligase
* * ÷ NZ_CP009273 993025 993142 118 3 [1] [1] 2 ssuE/elfA NADPH‑dependent FMN reductase/fimbrial protein
* * ÷ NZ_CP009273 993268 993278 11 2 [0] [0] 2 ssuE/elfA NADPH‑dependent FMN reductase/fimbrial protein
* * ÷ NZ_CP009273 993818 993832 15 2 [1] [0] 2 elfA fimbrial protein
* * ÷ NZ_CP009273 1015861 1015878 18 3 [1] [0] 2 [sulA] [sulA]
* * ÷ NZ_CP009273 1059458 1059497 40 2 [0] [0] 2 [yccE] [yccE]
* * ÷ NZ_CP009273 1088104 1088110 7 2 [0] [1] 2 pgaA/dgcT poly‑beta‑1,6 N‑acetyl‑D‑glucosamine export porin PgaA/GGDEF domain‑containing protein
* * ÷ NZ_CP009273 1098823 1098975 153 3 [1] [1] 2 csgD/csgB biofilm master transcriptional regulator CsgD/curli minor subunit CsgB
* * ÷ NZ_CP009273 1099147 1099201 55 3 [1] [1] 3 csgD/csgB biofilm master transcriptional regulator CsgD/curli minor subunit CsgB
* * ÷ NZ_CP009273 1164383 1164448 66 3 [1] [1] 5 comR/bhsA TetR family copper‑responsive transcriptional repressor ComR/multiple stress resistance protein BhsA
* * ÷ NZ_CP009273 1165841 1165869 29 3 [1] [0] 3 ldtC/mfd L,D‑transpeptidase LdtC/transcription‑repair coupling factor
* * ÷ NZ_CP009273 1193059 1193247 189 2 [1] [0] 2 BW25113_RS05920 hypothetical protein
* * ÷ NZ_CP009273 1205761 1205837 77 3 [0] [1] 2 [mcrA] [mcrA]
* * ÷ NZ_CP009273 1206732 1206749 18 2 [0] [0] 2 mcrA/BW25113_RS23640 5‑methylcytosine‑specific endonuclease McrA/isocitrate/isopropylmalate family dehydrogenase
* * ÷ NZ_CP009273 1206789 1206794 6 2 [0] [0] 2 mcrA/BW25113_RS23640 5‑methylcytosine‑specific endonuclease McrA/isocitrate/isopropylmalate family dehydrogenase
* * ÷ NZ_CP009273 1207098 1207152 55 3 [1] [1] 2 [iraM] [iraM]
* * ÷ NZ_CP009273 1207280 1207287 8 2 [0] [0] 2 iraM anti‑adapter protein IraM
* * ÷ NZ_CP009273 1207479 1207585 107 5 [1] [1] 2 iraM/BW25113_RS25985 anti‑adapter protein IraM/protein YmgK
* * ÷ NZ_CP009273 1207707 1207820 114 2 [0] [0] 2 BW25113_RS25985 BW25113_RS25985
* * ÷ NZ_CP009273 1207965 1207967 3 2 [0] [1] 3 BW25113_RS25985/BW25113_RS25535 protein YmgK/hypothetical protein
* * ÷ NZ_CP009273 1208176 1208197 22 2 [0] [1] 2 ycgX DUF1398 domain‑containing protein
* * ÷ NZ_CP009273 1209600 1209662 63 3 [1] [1] 2 bluR/bluF DNA‑binding transcriptional repressor BluR/blue light‑responsive regulator BluF
* * ÷ NZ_CP009273 1211123 1211170 48 2 [1] [0] 3 bluF/ycgZ blue light‑responsive regulator BluF/regulatory protein YcgZ
* * ÷ NZ_CP009273 1211762 1211815 54 2 [0] [0] 3 [ymgA] [ymgA]
* * ÷ NZ_CP009273 1214881 1214938 58 3 [1] [1] 3 BW25113_RS06070/BW25113_RS25990 hypothetical protein/autotransporter outer membrane beta‑barrel domain‑containing protein
* * ÷ NZ_CP009273 1218637 1218716 80 2 [1] [1] 2 BW25113_RS06100/BW25113_RS23645 hypothetical protein/hypothetical protein
* * ÷ NZ_CP009273 1225849 1225943 95 2 [1] [1] 2 [hlyE] [hlyE]
* * ÷ NZ_CP009273 1251666 1251774 109 2 [0] [1] 2 ycgV/ychF autotransporter outer membrane beta‑barrel domain‑containing protein/redox‑regulated ATPase YchF
* * ÷ NZ_CP009273 1275090 1275125 36 3 [1] [0] 4 narK/narG nitrate transporter NarK/nitrate reductase subunit alpha
* * ÷ NZ_CP009273 1293782 1293787 6 3 [0] [0] 2 adhE/ychE bifunctional acetaldehyde‑CoA/alcohol dehydrogenase/protein YchT
* * ÷ NZ_CP009273 1294930 1294977 48 4 [0] [0] 2 BW25113_RS25865 hypothetical protein
* * ÷ NZ_CP009273 1308121 1308196 76 2 [0] [1] 2 BW25113_RS25555/ompW YkgJ family cysteine cluster protein/outer membrane protein OmpW
* * ÷ NZ_CP009273 1309492 1309565 74 2 [1] [1] 2 [yciF] [yciF]
* * ÷ NZ_CP009273 1310408 1310458 51 2 [0] [0] 2 yciG/trpA general stress protein/tryptophan synthase subunit alpha
* * ÷ NZ_CP009273 1310595 1310634 40 2 [1] [0] 3 yciG/trpA general stress protein/tryptophan synthase subunit alpha
* * ÷ NZ_CP009273 1327926 1328014 89 2 [1] [1] 3 topA/cysB type I DNA topoisomerase/HTH‑type transcriptional regulator CysB
* * ÷ NZ_CP009273 1329154 1329216 63 3 [1] [1] 2 cysB/ymiA HTH‑type transcriptional regulator CysB/YmiA family putative membrane protein
* * ÷ NZ_CP009273 1338609 1338670 62 2 [1] [1] 5 yciT/BW25113_RS06720 DNA‑binding transcriptional regulator YciT/hypothetical protein
* * ÷ NZ_CP009273 1341089 1341151 63 4 [1] [0] 2 BW25113_RS25050 hypothetical protein
* * ÷ NZ_CP009273 1362244 1362283 40 2 [0] [1] 3 pspF/pspA phage shock protein operon transcriptional activator/phage shock protein PspA
* * ÷ NZ_CP009273 1390000 1390016 17 2 [1] [1] 2 ynaI low conductance mechanosensitive channel YnaI
* * ÷ NZ_CP009273 1407378 1407383 6 2 [0] [0] 3 intR site‑specific integrase
* * ÷ NZ_CP009273 1407791 1407801 11 2 [1] [0] 2 rcbA double‑strand break reduction protein RcbA
* * ÷ NZ_CP009273 1417974 1418036 63 2 [0] [0] 2 BW25113_RS26130/trkG hypothetical protein/Trk system potassium transporter TrkG
* * ÷ NZ_CP009273 1428687 1428687 1 2 [0] [0] 2 BW25113_RS25575/uspF hypothetical protein/universal stress protein UspF
* * ÷ NZ_CP009273 1431297 1431371 75 2 [0] [1] 5 ompN/nifJ porin OmpN/pyruvate:ferredoxin (flavodoxin) oxidoreductase
* * ÷ NZ_CP009273 1437096 1437180 85 2 [1] [1] 2 [ldhA] [ldhA]
* * ÷ NZ_CP009273 1448028 1448038 11 2 [0] [1] 2 paaZ/paaA phenylacetic acid degradation bifunctional protein PaaZ/1,2‑phenylacetyl‑CoA epoxidase subunit A
* * ÷ NZ_CP009273 1459333 1459559 227 2 [1] [1] 3 BW25113_RS25580 BW25113_RS25580
* * ÷ NZ_CP009273 1485766 1485806 41 2 [0] [1] 4 cybB/BW25113_RS07445 cytochrome b561/periplasmic protein
* * ÷ NZ_CP009273 1489385 1489418 34 2 [0] [1] 2 ydcI/ydcJ LysR substrate‑binding domain‑containing protein/VOC family protein
* * ÷ NZ_CP009273 1494791 1494846 56 2 [1] [1] 3 [tehA] [tehA]
* * ÷ NZ_CP009273 1521134 1521169 36 3 [1] [0] 2 yncG/yncH glutathione S‑transferase family protein/YncH family protein
* * ÷ NZ_CP009273 1521283 1521293 11 2 [0] [0] 4 yncH YncH family protein
* * ÷ NZ_CP009273 1521872 1521981 110 2 [0] [1] 2 yncH/BW25113_RS07645 YncH family protein/RHS repeat protein
* * ÷ NZ_CP009273 1524202 1524252 51 3 [1] [0] 2 BW25113_RS07645/BW25113_RS26145 RHS repeat protein/hypothetical protein
* * ÷ NZ_CP009273 1524312 1524378 67 2 [0] [1] 3 BW25113_RS07645/BW25113_RS26145 RHS repeat protein/hypothetical protein
* * ÷ NZ_CP009273 1524422 1524465 44 3 [1] [0] 2 BW25113_RS26145 hypothetical protein
* * ÷ NZ_CP009273 1524696 1524723 28 2 [1] [0] 2 BW25113_RS25600 protein YncO
* * ÷ NZ_CP009273 1524865 1524908 44 3 [1] [1] 2 BW25113_RS07655 ISAs1 family transposase
* * ÷ NZ_CP009273 1538801 1538825 25 2 [0] [1] 2 BW25113_RS07710 leucine‑rich repeat domain‑containing protein
* * ÷ NZ_CP009273 1539018 1539082 65 3 [1] [0] 2 BW25113_RS07710 leucine‑rich repeat domain‑containing protein
* * ÷ NZ_CP009273 1539131 1539134 4 2 [0] [0] 2 BW25113_RS07710 leucine‑rich repeat domain‑containing protein
* * ÷ NZ_CP009273 1539206 1539324 119 2 [0] [1] 2 BW25113_RS07710 leucine‑rich repeat domain‑containing protein
* * ÷ NZ_CP009273 1539486 1539515 30 2 [1] [1] 2 BW25113_RS07710 leucine‑rich repeat domain‑containing protein
* * ÷ NZ_CP009273 1540393 1540480 88 2 [1] [1] 2 yddL/yddG porin/aromatic amino acid efflux DMT transporter YddG
* * ÷ NZ_CP009273 1566365 1566467 103 3 [1] [0] 4 gadB/pqqL glutamate decarboxylase/insulinase family protein
* * ÷ NZ_CP009273 1573662 1573698 37 2 [1] [1] 2 yddA/BW25113_RS25610 ABC transporter ATP‑binding protein/permease/protein YneP
* * ÷ NZ_CP009273 1576860 1576864 5 5 [0] [0] 2 ydeN/ydeO sulfatase/acid stress response transcriptional regulator YdeO
* * ÷ NZ_CP009273 1577976 1578041 66 2 [1] [1] 2 [safA] [safA]
* * ÷ NZ_CP009273 1580830 1580846 17 6 [1] [0] 2 ydeP/ydeQ acid resistance putative oxidoreductase YdeP/fimbrial protein
* * ÷ NZ_CP009273 1580882 1581029 148 2 [0] [0] 4 ydeP/ydeQ acid resistance putative oxidoreductase YdeP/fimbrial protein
* * ÷ NZ_CP009273 1581483 1581518 36 3 [1] [0] 2 ydeQ fimbrial protein
* * ÷ NZ_CP009273 1592426 1592560 135 2 [0] [1] 2 BW25113_RS07915/lsrK ECSE_1600 family autotransporter/autoinducer‑2 kinase
* * ÷ NZ_CP009273 1592678 1592693 16 2 [0] [1] 2 BW25113_RS07915/lsrK ECSE_1600 family autotransporter/autoinducer‑2 kinase
* * ÷ NZ_CP009273 1618881 1618976 96 2 [1] [0] 2 ydeI/ydeJ YdeI family stress tolerance OB fold protein/2‑oxo‑tetronate isomerase
* * ÷ NZ_CP009273 1626888 1626949 62 2 [1] [1] 3 ydfJ/BW25113_RS25615 MHS family MFS transporter/hypothetical protein
* * ÷ NZ_CP009273 1627113 1627138 26 2 [0] [1] 5 ydfJ/BW25113_RS25615 MHS family MFS transporter/hypothetical protein
* * ÷ NZ_CP009273 1631293 1631352 60 3 [1] [1] 3 [ydfO] [ydfO]
* * ÷ NZ_CP009273 1631835 1631873 39 2 [0] [1] 2 [gnsB] [gnsB]
* * ÷ NZ_CP009273 1631964 1632000 37 2 [1] [0] 2 gnsB addiction module toxin, GnsA/GnsB family
* * ÷ NZ_CP009273 1632566 1632571 6 2 [1] [0] 2 ynfQ cold‑shock protein
* * ÷ NZ_CP009273 1633005 1633083 79 2 [0] [0] 4 cspI/rzpQ cold shock protein CspI/DUF2514 domain‑containing protein
* * ÷ NZ_CP009273 1633156 1633271 116 2 [0] [0] 2 cspI/rzpQ cold shock protein CspI/DUF2514 domain‑containing protein
* * ÷ NZ_CP009273 1635023 1635037 15 2 [1] [0] 2 essD/ynfU phage lysis protein EssD/putative zinc‑binding protein YnfU
* * ÷ NZ_CP009273 1635220 1635295 76 3 [1] [1] 2 [ynfU] [ynfU]
* * ÷ NZ_CP009273 1641094 1641112 19 2 [1] [1] 2 flxA/BW25113_RS23105 FlxA‑like family protein/hypothetical protein
* * ÷ NZ_CP009273 1652283 1652301 19 2 [0] [0] 3 ynfD/ynfE DUF1161 domain‑containing protein/dimethyl sulfoxide reductase subunit A
* * ÷ NZ_CP009273 1663849 1663887 39 3 [1] [0] 3 [ynfL] [ynfL]
* * ÷ NZ_CP009273 1699160 1699199 40 6 [0] [1] 2 blr/ydgT division septum protein Blr/transcription modulator YdgT
* * ÷ NZ_CP009273 1715124 1715134 11 3 [0] [0] 4 slyA/ydhI transcriptional regulator SlyA/DUF1656 domain‑containing protein
* * ÷ NZ_CP009273 1748924 1749081 158 5 [1] [0] 2 ydhY/fumD ferredoxin‑like protein/fumarate hydratase FumD
* * ÷ NZ_CP009273 1749433 1749443 11 3 [0] [1] 2 fumD/BW25113_RS26160 fumarate hydratase FumD/protein YnhH
* * ÷ NZ_CP009273 1749652 1749701 50 2 [1] [1] 2 fumD/BW25113_RS26160 fumarate hydratase FumD/protein YnhH
* * ÷ NZ_CP009273 1751436 1751479 44 2 [1] [1] 3 pykF/lpp pyruvate kinase PykF/murein lipoprotein Lpp
* * ÷ NZ_CP009273 1772957 1773041 85 3 [1] [0] 2 ydiP AraC family transcriptional regulator
* * ÷ NZ_CP009273 1783848 1783885 38 2 [1] [1] 2 [hemP] [hemP]
* * ÷ NZ_CP009273 1797627 1797637 11 2 [1] [0] 2 espL1 type III secretion system effector EspL1
* * ÷ NZ_CP009273 1800462 1800566 105 4 [1] [1] 2 ydiY/pfkB YdiY family protein/6‑phosphofructokinase II
* * ÷ NZ_CP009273 1806963 1806970 8 2 [0] [0] 2 BW25113_RS09050 hypothetical protein
* * ÷ NZ_CP009273 1807515 1807564 50 2 [1] [0] 2 BW25113_RS09050/cedA hypothetical protein/cell division activator CedA
* * ÷ NZ_CP009273 1815514 1815591 78 3 [1] [1] 2 [chbB] [chbB]
* * ÷ NZ_CP009273 1820134 1820190 57 2 [0] [1] 2 spy/astE ATP‑independent periplasmic protein‑refolding chaperone Spy/succinylglutamate desuccinylase
* * ÷ NZ_CP009273 1826267 1826292 26 2 [1] [1] 4 astC/xthA succinylornithine/acetylornithine transaminase/exodeoxyribonuclease III
* * ÷ NZ_CP009273 1836608 1836610 3 2 [0] [0] 2 ynjH/gdhA YnjH family protein/NADP‑specific glutamate dehydrogenase
* * ÷ NZ_CP009273 1839034 1839146 113 2 [1] [1] 2 [ynjI] [ynjI]
* * ÷ NZ_CP009273 1860826 1860846 21 2 [1] [0] 2 mipA/yeaG scaffolding protein MipA/protein kinase YeaG
* * ÷ NZ_CP009273 1864804 1864872 69 3 [1] [1] 2 cdgI GGDEF domain‑containing protein
* * ÷ NZ_CP009273 1888067 1888123 57 3 [0] [1] 2 yoaB/yoaC RidA family protein/DUF1889 family protein
* * ÷ NZ_CP009273 1896142 1896164 23 2 [1] [0] 2 yoaE/manX CNNM family cation transport protein YoaE/PTS mannose transporter subunit IIAB
* * ÷ NZ_CP009273 1899577 1899683 107 3 [1] [1] 3 yobD/mntP DUF986 family protein/manganese efflux pump MntP
* * ÷ NZ_CP009273 1902212 1902307 96 2 [1] [0] 2 yobF/yebO DUF2627 domain‑containing protein/YebO family protein
* * ÷ NZ_CP009273 1902343 1902420 78 2 [0] [1] 3 yobF/yebO DUF2627 domain‑containing protein/YebO family protein
* * ÷ NZ_CP009273 1940352 1940444 93 3 [1] [0] 2 yobI yobI
* * ÷ NZ_CP009273 1940501 1940520 20 2 [0] [1] 3 [yebB] [yebB]
* * ÷ NZ_CP009273 1940885 1940898 14 2 [1] [1] 2 yebB YebB family permuted papain‑like enzyme
* * ÷ NZ_CP009273 1952507 1952600 94 2 [0] [0] 2 torY/cutC NapC/NirT family cytochrome c/copper homeostasis protein CutC
* * ÷ NZ_CP009273 1972752 1972774 23 35 [0] [1] 2 flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
* * ÷ NZ_CP009273 1972996 1973046 51 3 [1] [0] 2 flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
* * ÷ NZ_CP009273 1973094 1973133 40 2 [0] [0] 2 flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
* * ÷ NZ_CP009273 1981536 1981585 50 3 [1] [1] 3 azuC/yecR stress response protein AzuC/YecR‑like lipofamily protein
* * ÷ NZ_CP009273 1982055 1982144 90 3 [0] [1] 3 yecR/ftnA YecR‑like lipofamily protein/non‑heme ferritin
* * ÷ NZ_CP009273 1989121 1989165 45 2 [0] [1] 3 [BW25113_RS25650] [BW25113_RS25650]
* * ÷ NZ_CP009273 1990353 1990448 96 2 [1] [1] 4 sdiA/yecC transcriptional regulator SdiA/L‑cystine ABC transporter ATP‑binding protein YecC
* * ÷ NZ_CP009273 2004694 2004752 59 2 [1] [0] 2 [BW25113_RS10120] [BW25113_RS10120]
* * ÷ NZ_CP009273 2005479 2005541 63 2 [0] [1] 3 BW25113_RS10120 DUF5503 domain‑containing protein
* * ÷ NZ_CP009273 2005764 2005780 17 3 [1] [0] 2 BW25113_RS10120 DUF5503 domain‑containing protein
* * ÷ NZ_CP009273 2027033 2027135 103 2 [1] [1] 2 drpB/ompC cell division protein DrpB/porin OmpC
* * ÷ NZ_CP009273 2027304 2027531 228 5 [1] [0] 2 drpB/ompC cell division protein DrpB/porin OmpC
* * ÷ NZ_CP009273 2034700 2034743 44 2 [1] [1] 3 msrQ/zinT protein‑methionine‑sulfoxide reductase heme‑binding subunit MsrQ/metal‑binding protein ZinT
* * ÷ NZ_CP009273 2046746 2046764 19 2 [0] [1] 3 BW25113_RS10340 glycosyltransferase family 9 protein
* * ÷ NZ_CP009273 2050159 2050287 129 2 [1] [0] 2 amn/yeeN AMP nucleosidase/YebC/PmpR family DNA‑binding transcriptional regulator
* * ÷ NZ_CP009273 2050992 2051153 162 2 [1] [1] 2 [yeeN] [yeeN]
* * ÷ NZ_CP009273 2061986 2062130 145 2 [1] [0] 4 [BW25113_RS24005] [BW25113_RS24005]
* * ÷ NZ_CP009273 2079069 2079150 82 3 [1] [1] 2 yeeE/plaP thiosulfate utilization transporter TsuA/YeeE/putrescine/proton symporter PlaP
* * ÷ NZ_CP009273 2094944 2094978 35 3 [1] [1] 2 wbbL N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL
* * ÷ NZ_CP009273 2096858 2096869 12 5 [1] [0] 4 wbbL N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL
* * ÷ NZ_CP009273 2096932 2096933 2 2 [0] [0] 2 wbbK glycosyltransferase family 1 protein
* * ÷ NZ_CP009273 2096974 2097009 36 2 [0] [0] 2 wbbK glycosyltransferase family 1 protein
* * ÷ NZ_CP009273 2097154 2097184 31 2 [0] [0] 5 wbbK glycosyltransferase family 1 protein
* * ÷ NZ_CP009273 2097340 2097375 36 2 [1] [0] 2 wbbK glycosyltransferase family 1 protein
* * ÷ NZ_CP009273 2097426 2097616 191 3 [1] [0] 2 wbbK glycosyltransferase family 1 protein
* * ÷ NZ_CP009273 2099374 2099379 6 2 [0] [0] 2 wbbI beta‑1,6‑galactofuranosyltransferase
* * ÷ NZ_CP009273 2099548 2099687 140 2 [0] [1] 2 wzy O16 family O‑antigen polymerase
* * ÷ NZ_CP009273 2100199 2100245 47 3 [1] [1] 3 wzy O16 family O‑antigen polymerase
* * ÷ NZ_CP009273 2100667 2100682 16 2 [0] [0] 2 wzy O16 family O‑antigen polymerase
* * ÷ NZ_CP009273 2100746 2100777 32 2 [0] [0] 2 glf UDP‑galactopyranose mutase
* * ÷ NZ_CP009273 2102896 2102906 11 2 [0] [1] 3 wzx O16 family O‑antigen flippase
* * ÷ NZ_CP009273 2103233 2103249 17 3 [1] [0] 7 rfbC dTDP‑4‑dehydrorhamnose 3,5‑epimerase
* * ÷ NZ_CP009273 2131184 2131237 54 2 [1] [0] 3 wza/yegH polysaccharide export protein Wza/TerC family protein
* * ÷ NZ_CP009273 2161747 2161775 29 2 [1] [0] 2 BW25113_RS10880 hypothetical protein
* * ÷ NZ_CP009273 2161811 2161889 79 2 [0] [1] 2 BW25113_RS10880/yegS hypothetical protein/lipid kinase YegS
* * ÷ NZ_CP009273 2170711 2170751 41 3 [1] [1] 2 gatY/fbaB tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase
* * ÷ NZ_CP009273 2185801 2185954 154 2 [1] [1] 2 yehD/yehE fimbrial protein/YehE family protein
* * ÷ NZ_CP009273 2222525 2222563 39 4 [1] [0] 2 [yohP] [yohP]
* * ÷ NZ_CP009273 2243117 2243119 3 3 [0] [0] 2 yeiE/yeiH DNA‑binding transcriptional regulator YeiE/YeiH family protein
* * ÷ NZ_CP009273 2253071 2253129 59 2 [1] [1] 2 psuK/fruA pseudouridine kinase/PTS fructose transporter subunit IIBC
* * ÷ NZ_CP009273 2297183 2297358 176 2 [1] [1] 3 [BW25113_RS25870] [BW25113_RS25870]
* * ÷ NZ_CP009273 2300374 2300381 8 2 [1] [0] 2 mqo/yojI malate dehydrogenase (quinone)/microcin J25 efflux ABC transporter YojI
* * ÷ NZ_CP009273 2306470 2306524 55 2 [0] [1] 2 ompC/rcsD porin OmpC/phosphotransferase RcsD
* * ÷ NZ_CP009273 2337753 2337869 117 3 [1] [0] 2 yfaL/nrdA AIDA‑I family autotransporter adhesin YfaL/EhaC/ribonucleoside‑diphosphate reductase subunit alpha
* * ÷ NZ_CP009273 2357871 2357914 44 2 [0] [1] 3 yfaZ/nudI YfaZ family protein/nucleoside triphosphatase NudI
* * ÷ NZ_CP009273 2359281 2359311 31 2 [0] [0] 2 ais/arnB lipopolysaccharide core heptose(II)‑phosphate phosphatase Ais/UDP‑4‑amino‑4‑deoxy‑L‑arabinose aminotransferase
* * ÷ NZ_CP009273 2376484 2376484 1 2 [0] [0] 2 elaD deubiquitinase ElaD
* * ÷ NZ_CP009273 2376892 2376962 71 3 [1] [1] 3 elaD deubiquitinase ElaD
* * ÷ NZ_CP009273 2377317 2377329 13 2 [0] [0] 2 elaD deubiquitinase ElaD
* * ÷ NZ_CP009273 2379266 2379353 88 2 [1] [0] 2 [yfbL] [yfbL]
* * ÷ NZ_CP009273 2400573 2400645 73 3 [0] [0] 2 lrhA/alaA transcriptional regulator LrhA/alanine transaminase AlaA
* * ÷ NZ_CP009273 2449291 2449518 228 2 [0] [1] 3 yfcV/sixA fimbrial protein/phosphohistidine phosphatase SixA
* * ÷ NZ_CP009273 2457527 2457553 27 2 [0] [0] 2 [BW25113_RS12235] [BW25113_RS12235]
* * ÷ NZ_CP009273 2457597 2457607 11 2 [0] [0] 2 BW25113_RS12235/mlaA hypothetical protein/phospholipid‑binding lipoprotein MlaA
* * ÷ NZ_CP009273 2457650 2457757 108 2 [0] [1] 4 [mlaA] [mlaA]
* * ÷ NZ_CP009273 2462809 2462996 188 6 [1] [0] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2463145 2463244 100 3 [1] [1] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2463575 2463787 213 2 [0] [1] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2467444 2467497 54 2 [1] [0] 8 [BW25113_RS12305] [BW25113_RS12305]
* * ÷ NZ_CP009273 2474235 2474266 32 4 [1] [0] 2 emrY multidrug efflux MFS transporter permease subunit EmrY
* * ÷ NZ_CP009273 2476770 2476811 42 3 [0] [1] 3 emrK multidrug efflux MFS transporter periplasmic adaptor subunit EmrK
* * ÷ NZ_CP009273 2488080 2488136 57 3 [1] [0] 2 yfdX/ypdI YfdX family protein/colanic acid biosynthesis lipoprotein YpdI
* * ÷ NZ_CP009273 2488180 2488214 35 2 [0] [1] 2 ypdI colanic acid biosynthesis lipoprotein YpdI
* * ÷ NZ_CP009273 2569299 2569353 55 2 [0] [1] 3 eutS/maeB ethanolamine utilization microcompartment protein EutS/NADP‑dependent oxaloacetate‑decarboxylating malate dehydrogenase
* * ÷ NZ_CP009273 2571864 2571874 11 9 [0] [0] 3 maeB/tal NADP‑dependent oxaloacetate‑decarboxylating malate dehydrogenase/transaldolase
* * ÷ NZ_CP009273 2576225 2576240 16 3 [0] [0] 2 ypfG/nudK DUF1176 domain‑containing protein/GDP‑mannose pyrophosphatase NudK
* * ÷ NZ_CP009273 2584475 2584527 53 2 [0] [1] 5 ypfM/yffB protein YpfM/ArsC family reductase
* * ÷ NZ_CP009273 2622460 2622540 81 2 [1] [1] 6 [BW25113_RS25940] [BW25113_RS25940]
* * ÷ NZ_CP009273 2622984 2623080 97 2 [1] [0] 3 yfgG/yfgH YfgG family protein/glycine zipper 2TM domain‑containing protein
* * ÷ NZ_CP009273 2693343 2693417 75 2 [1] [0] 2 yfhL/shoB 4Fe‑4S dicluster ferredoxin YfhL/type I toxin‑antitoxin system toxin ShoB
* * ÷ NZ_CP009273 2719120 2719125 6 2 [0] [0] 2 kgtP/rrf alpha‑ketoglutarate permease/5S ribosomal RNA
* * ÷ NZ_CP009273 2751087 2751125 39 3 [1] [0] 2 BW25113_RS13685 hypothetical protein
* * ÷ NZ_CP009273 2753213 2753221 9 3 [1] [0] 3 yfjI YfjI family protein
* * ÷ NZ_CP009273 2753640 2753750 111 2 [1] [1] 2 yfjI YfjI family protein
* * ÷ NZ_CP009273 2766669 2766787 119 3 [1] [1] 2 [BW25113_RS13770] [BW25113_RS13770]
* * ÷ NZ_CP009273 2766935 2766980 46 3 [1] [0] 2 BW25113_RS13770 hypothetical protein
* * ÷ NZ_CP009273 2767751 2767808 58 2 [0] [0] 3 BW25113_RS13770 hypothetical protein
* * ÷ NZ_CP009273 2778170 2778188 19 2 [0] [0] 2 BW25113_RS25705 DUF5507 domain‑containing protein
* * ÷ NZ_CP009273 2778548 2778589 42 2 [0] [0] 2 BW25113_RS25705/BW25113_RS13825 DUF5507 domain‑containing protein/tRNA‑Ile
* * ÷ NZ_CP009273 2779389 2779429 41 2 [0] [0] 2 BW25113_RS13825/BW25113_RS26005 tRNA‑Ile/alpha‑amylase family glycosyl hydrolase
* * ÷ NZ_CP009273 2779831 2779959 129 2 [1] [1] 2 BW25113_RS26005 alpha‑amylase family glycosyl hydrolase
* * ÷ NZ_CP009273 2781999 2782017 19 3 [1] [0] 2 [BW25113_RS26005] [BW25113_RS26005]
* * ÷ NZ_CP009273 2790394 2790438 45 7 [0] [0] 2 yqaE/ygaV YqaE/Pmp3 family membrane protein/metalloregulator ArsR/SmtB family transcription factor
* * ÷ NZ_CP009273 2791917 2792041 125 9 [1] [1] 2 stpA/alaE DNA‑binding protein StpA/L‑alanine exporter AlaE
* * ÷ NZ_CP009273 2792311 2792428 118 2 [1] [1] 4 stpA/alaE DNA‑binding protein StpA/L‑alanine exporter AlaE
* * ÷ NZ_CP009273 2819063 2819118 56 2 [1] [0] 2 mltB/srlA lytic murein transglycosylase B/PTS glucitol/sorbitol transporter subunit IIC
* * ÷ NZ_CP009273 2825734 2825761 28 2 [0] [1] 2 norR/norV nitric oxide reductase transcriptional regulator NorR/anaerobic nitric oxide reductase flavorubredoxin
* * ÷ NZ_CP009273 2877612 2877668 57 2 [1] [0] 2 casA/cas3 type I‑E CRISPR‑associated protein Cse1/CasA/CRISPR‑associated helicase/endonuclease Cas3
* * ÷ NZ_CP009273 2877704 2877803 100 2 [0] [1] 2 casA/cas3 type I‑E CRISPR‑associated protein Cse1/CasA/CRISPR‑associated helicase/endonuclease Cas3
* * ÷ NZ_CP009273 2892799 2892820 22 2 [1] [1] 2 ygcU/ygcW FAD‑binding oxidoreductase/SDR family oxidoreductase
* * ÷ NZ_CP009273 2897127 2897223 97 3 [1] [1] 2 ygcE/queE FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE
* * ÷ NZ_CP009273 2897778 2897805 28 2 [1] [0] 2 ygcE/queE FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE
* * ÷ NZ_CP009273 2897880 2897909 30 2 [0] [0] 2 ygcE/queE FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE
* * ÷ NZ_CP009273 2898909 2898985 77 3 [1] [1] 2 [BW25113_RS14445] [BW25113_RS14445]
* * ÷ NZ_CP009273 2927169 2927206 38 3 [1] [0] 2 fucA/fucP L‑fuculose‑phosphate aldolase/L‑fucose:H+ symporter permease
* * ÷ NZ_CP009273 2975654 2975774 121 4 [1] [0] 2 araE/kduD arabinose‑proton symporter AraE/2‑dehydro‑3‑deoxy‑D‑gluconate 5‑dehydrogenase KduD
* * ÷ NZ_CP009273 2980529 2980538 10 2 [0] [1] 2 yqeG/yqeH amino acid permease/helix‑turn‑helix transcriptional regulator
* * ÷ NZ_CP009273 2981768 2981811 44 4 [0] [1] 7 yqeH/yqeI helix‑turn‑helix transcriptional regulator/transcriptional regulator
* * ÷ NZ_CP009273 2984421 2984454 34 2 [1] [0] 2 BW25113_RS14825/ygeG hypothetical protein/tetratricopeptide repeat protein
* * ÷ NZ_CP009273 2984530 2984577 48 2 [0] [0] 2 BW25113_RS14825/ygeG hypothetical protein/tetratricopeptide repeat protein
* * ÷ NZ_CP009273 2986844 2986870 27 2 [1] [1] 3 ygeH/BW25113_RS14840 HilA family transcriptional regulator YgeH/hypothetical protein
* * ÷ NZ_CP009273 2987488 2987541 54 3 [0] [0] 3 BW25113_RS14845 lytic transglycosylase domain‑containing protein
* * ÷ NZ_CP009273 2988485 2988651 167 2 [0] [1] 3 BW25113_RS14850/BW25113_RS26010 response regulator transcription factor/hypothetical protein
* * ÷ NZ_CP009273 2999286 2999299 14 2 [0] [1] 2 ygeV/ygeW sigma‑54‑dependent Fis family transcriptional regulator/knotted carbamoyltransferase YgeW
* * ÷ NZ_CP009273 3072818 3072909 92 2 [0] [1] 3 cmtB/tkt PTS mannitol transporter subunit IIA/transketolase
* * ÷ NZ_CP009273 3081397 3081443 47 2 [0] [1] 2 metK/galP methionine adenosyltransferase/galactose/proton symporter
* * ÷ NZ_CP009273 3106852 3106866 15 2 [1] [0] 2 yghG/pppA type II secretion system pilot lipoprotein GspS‑beta/prepilin peptidase PppA
* * ÷ NZ_CP009273 3112611 3112621 11 3 [1] [0] 2 sslE/glcA lipoprotein metalloprotease SslE/glycolate permease GlcA
* * ÷ NZ_CP009273 3112867 3112905 39 3 [1] [1] 2 sslE/glcA lipoprotein metalloprotease SslE/glycolate permease GlcA
* * ÷ NZ_CP009273 3114660 3114683 24 3 [1] [1] 2 glcA/glcB glycolate permease GlcA/malate synthase G
* * ÷ NZ_CP009273 3176981 3177036 56 2 [1] [1] 2 BW25113_RS25885/ribB hypothetical protein/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
* * ÷ NZ_CP009273 3178531 3178556 26 2 [0] [0] 2 ubiK/ygiL ubiquinone biosynthesis accessory factor UbiK/fimbrial‑like protein
* * ÷ NZ_CP009273 3178611 3178775 165 2 [0] [1] 2 [ygiL] [ygiL]
* * ÷ NZ_CP009273 3246074 3246188 115 3 [0] [1] 4 yhaH/yhaI DUF805 domain‑containing protein/DUF805 domain‑containing protein
* * ÷ NZ_CP009273 3246627 3246683 57 2 [1] [0] 3 [yhaJ] [yhaJ]
* * ÷ NZ_CP009273 3259493 3259509 17 2 [0] [1] 2 tdcA transcriptional regulator TdcA
* * ÷ NZ_CP009273 3260541 3260561 21 2 [0] [1] 2 tdcA/tdcR transcriptional regulator TdcA/transcriptional activator TdcR
* * ÷ NZ_CP009273 3260754 3260768 15 3 [1] [0] 2 tdcR transcriptional activator TdcR
* * ÷ NZ_CP009273 3261710 3261778 69 3 [1] [0] 2 [BW25113_RS16190]–[yhaC] [BW25113_RS16190],[yhaC]
* * ÷ NZ_CP009273 3262583 3262613 31 2 [1] [0] 2 yhaC YhaC family protein
* * ÷ NZ_CP009273 3262656 3262728 73 2 [0] [0] 2 yhaC YhaC family protein
* * ÷ NZ_CP009273 3354244 3354306 63 2 [0] [0] 4 gltD/gltF glutamate synthase subunit GltD/DUF1120 domain‑containing protein
* * ÷ NZ_CP009273 3354386 3354427 42 2 [0] [1] 2 gltD/gltF glutamate synthase subunit GltD/DUF1120 domain‑containing protein
* * ÷ NZ_CP009273 3378679 3378783 105 2 [1] [1] 2 argR/yhcN transcriptional regulator ArgR/peroxide/acid stress response protein YhcN
* * ÷ NZ_CP009273 3406981 3406998 18 2 [0] [0] 2 acrS/acrE multidrug efflux transporter transcriptional repressor AcrS/multidrug efflux RND transporter periplasmic adaptor subunit AcrE
* * ÷ NZ_CP009273 3448785 3448888 104 2 [1] [1] 4 gspA/gspC type II secretion system protein GspA/type II secretion system protein GspC
* * ÷ NZ_CP009273 3460432 3460448 17 2 [1] [1] 2 bfd/chiA bacterioferritin‑associated ferredoxin/bifunctional chitinase/lysozyme
* * ÷ NZ_CP009273 3463312 3463387 76 2 [1] [1] 2 chiA/tuf bifunctional chitinase/lysozyme/elongation factor Tu
* * ÷ NZ_CP009273 3575371 3575536 166 2 [0] [1] 4 hcp Hcp1 family type VI secretion system effector
* * ÷ NZ_CP009273 3576436 3576517 82 2 [1] [1] 3 BW25113_RS17825 YrhA family protein
* * ÷ NZ_CP009273 3577857 3577868 12 2 [1] [0] 2 BW25113_RS25760 hypothetical protein
* * ÷ NZ_CP009273 3625537 3625557 21 4 [1] [0] 2 yhiJ YhiJ/YhiL family protein
* * ÷ NZ_CP009273 3626524 3626560 37 2 [0] [1] 4 BW25113_RS18065 YhiJ/YhiL family protein
* * ÷ NZ_CP009273 3627484 3627559 76 2 [0] [1] 4 BW25113_RS18065 YhiJ/YhiL family protein
* * ÷ NZ_CP009273 3628487 3632454 3968 39 [0] [1] 2 [yhiM]–[pitA] [yhiM],yhiN,[pitA]
* * ÷ NZ_CP009273 3632540 3639035 6496 2 [1] [0] 2 uspB–[rlmJ] uspB,uspA,BW25113_RS26225,BW25113_RS26230,dtpB,rsmJ,prlC,[rlmJ]
* * ÷ NZ_CP009273 3639096 3639856 761 2 [0] [0] 2 [rlmJ]–[gorA] [rlmJ],[gorA]
* * ÷ NZ_CP009273 3639918 3642285 2368 2 [0] [1] 3 [gorA]–arsR [gorA],dinQ,arsR
* * ÷ NZ_CP009273 3642373 3642588 216 2 [0] [0] 2 arsB arsenite/antimonite:H(+) antiporter ArsB
* * ÷ NZ_CP009273 3642632 3646531–3645396 2765–3900 2 [0] [1] 3 [arsB]–BW25113_RS18160 [arsB],arsC,BW25113_RS18155,BW25113_RS18160
* * ÷ NZ_CP009273 3648188 3648229 42 2 [0] [0] 2 dctR LuxR C‑terminal‑related transcriptional regulator
* * ÷ NZ_CP009273 3650231 3650241 11 5 [0] [0] 4 hdeA/hdeD acid‑activated periplasmic chaperone HdeA/acid‑resistance protein HdeD
* * ÷ NZ_CP009273 3715553 3715609 57 2 [1] [1] 3 BW25113_RS25300/glyS IS3‑like element IS150 family transposase/glycine‑‑tRNA ligase subunit beta
* * ÷ NZ_CP009273 3721192 3721235 44 2 [1] [0] 2 BW25113_RS18495/xylB inner membrane protein YiaB/xylulokinase
* * ÷ NZ_CP009273 3751267 3751371 105 2 [1] [1] 2 yiaY/selB L‑threonine dehydrogenase/selenocysteine‑specific translation elongation factor
* * ÷ NZ_CP009273 3763005 3763031 27 2 [0] [0] 2 BW25113_RS26240 Imm57 family immunity protein
* * ÷ NZ_CP009273 3763101 3763104 4 2 [0] [0] 2 BW25113_RS26240 Imm57 family immunity protein
* * ÷ NZ_CP009273 3763164 3763185 22 2 [0] [0] 2 BW25113_RS26240/yibH Imm57 family immunity protein/HlyD family secretion protein
* * ÷ NZ_CP009273 3787080 3787106 27 2 [1] [1] 2 yibB/rfaD protein YibB/ADP‑glyceromanno‑heptose 6‑epimerase
* * ÷ NZ_CP009273 3790351 3790454 104 3 [1] [0] 2 waaL O‑antigen ligase
* * ÷ NZ_CP009273 3790504 3790536 33 2 [0] [0] 2 waaL O‑antigen ligase
* * ÷ NZ_CP009273 3791617 3791621 5 2 [0] [0] 2 waaU glycosyltransferase family 9 protein
* * ÷ NZ_CP009273 3791975 3791982 8 2 [1] [0] 2 waaU glycosyltransferase family 9 protein
* * ÷ NZ_CP009273 3792520 3792696 177 2 [0] [0] 2 [waaU] [waaU]
* * ÷ NZ_CP009273 3792783 3792784 2 2 [0] [0] 2 waaZ 3‑deoxy‑D‑manno‑oct‑2‑ulosonate III transferase WaaZ
* * ÷ NZ_CP009273 3792820 3792866 47 2 [0] [1] 5 waaZ 3‑deoxy‑D‑manno‑oct‑2‑ulosonate III transferase WaaZ
* * ÷ NZ_CP009273 3794217 3794256 40 2 [0] [1] 3 rfaY lipopolysaccharide core heptose(II) kinase RfaY
* * ÷ NZ_CP009273 3794562 3794653 92 2 [0] [0] 3 rfaJ lipopolysaccharide 1,2‑glucosyltransferase RfaJ
* * ÷ NZ_CP009273 3796327 3796372 46 2 [0] [1] 3 waaO lipopolysaccharide 3‑alpha‑galactosyltransferase
* * ÷ NZ_CP009273 3797711 3797762 52 3 [1] [0] 2 rfaS LPS core biosynthesis protein RfaS
* * ÷ NZ_CP009273 3797821 3797863 43 2 [0] [1] 2 rfaS LPS core biosynthesis protein RfaS
* * ÷ NZ_CP009273 3798120 3798134 15 2 [0] [1] 3 rfaS LPS core biosynthesis protein RfaS
* * ÷ NZ_CP009273 3798224 3798254 31 2 [1] [0] 2 rfaS LPS core biosynthesis protein RfaS
* * ÷ NZ_CP009273 3798327 3798497 171 2 [0] [1] 2 [rfaS] [rfaS]
* * ÷ NZ_CP009273 3830063 3830128 66 2 [1] [1] 3 BW25113_RS26245/setC virulence RhuM family protein/sugar efflux transporter
* * ÷ NZ_CP009273 3837251 3837320 70 2 [1] [1] 2 adeQ/adeD adenine permease AdeQ/adenine deaminase
* * ÷ NZ_CP009273 3943505 3943548 44 2 [0] [1] 2 yifB/ilvL YifB family Mg chelatase‑like AAA ATPase/ilv operon leader peptide
* * ÷ NZ_CP009273 3996487 3996499 13 3 [1] [1] 3 BW25113_RS19825 hypothetical protein
* * ÷ NZ_CP009273 4037398 4037473 76 2 [1] [1] 2 [dsbA] [dsbA]
* * ÷ NZ_CP009273 4062728 4062777 50 2 [1] [0] 2 yihQ/yihR sulfoquinovosidase/aldose‑1‑epimerase
* * ÷ NZ_CP009273 4080233 4080242 10 2 [1] [1] 2 fdhD/yiiG formate dehydrogenase accessory sulfurtransferase FdhD/YiiG family protein
* * ÷ NZ_CP009273 4086311 4086322 12 4 [0] [1] 2 frvA/rhaM PTS fructose transporter subunit IIA/L‑rhamnose mutarotase
* * ÷ NZ_CP009273 4102690 4102720 31 2 [1] [1] 2 yiiR/yiiS DUF805 domain‑containing protein/DUF406 domain‑containing protein
* * ÷ NZ_CP009273 4205241 4205259 19 3 [1] [0] 3 metA/aceB homoserine O‑succinyltransferase/malate synthase A
* * ÷ NZ_CP009273 4212433 4212514 82 2 [1] [1] 2 espL4/iclR type III secretion system effector EspL4/glyoxylate bypass operon transcriptional repressor IclR
* * ÷ NZ_CP009273 4225500 4225530 31 2 [1] [1] 2 pgi/yjbE glucose‑6‑phosphate isomerase/exopolysaccharide production protein YjbE
* * ÷ NZ_CP009273 4225623 4225767 145 2 [0] [0] 2 pgi/yjbE glucose‑6‑phosphate isomerase/exopolysaccharide production protein YjbE
* * ÷ NZ_CP009273 4240749 4240866 118 2 [0] [1] 3 BW25113_RS20970 SopA family protein
* * ÷ NZ_CP009273 4241401 4241459 59 2 [1] [0] 4 BW25113_RS20970 SopA family protein
* * ÷ NZ_CP009273 4241548 4241622 75 2 [0] [1] 3 BW25113_RS20970 SopA family protein
* * ÷ NZ_CP009273 4250368 4250380 13 2 [1] [0] 2 BW25113_RS21020 DUF2713 domain‑containing protein
* * ÷ NZ_CP009273 4251277 4251317 41 2 [0] [1] 5 BW25113_RS21020/dusA DUF2713 domain‑containing protein/tRNA dihydrouridine(20/20a) synthase DusA
* * ÷ NZ_CP009273 4258823 4258835 13 3 [1] [0] 2 BW25113_RS26020 hypothetical protein
* * ÷ NZ_CP009273 4271646 4271679 34 2 [0] [1] 2 yjcE/espX5 Na+/H+ antiporter/T3SS effector pentapeptide repeat protein EspX5
* * ÷ NZ_CP009273 4272422 4272458 37 2 [1] [1] 3 espX5 T3SS effector pentapeptide repeat protein EspX5
* * ÷ NZ_CP009273 4272621 4272658 38 3 [1] [0] 2 espX5 T3SS effector pentapeptide repeat protein EspX5
* * ÷ NZ_CP009273 4272714 4272784 71 2 [0] [1] 2 espX5 T3SS effector pentapeptide repeat protein EspX5
* * ÷ NZ_CP009273 4272989 4273103 115 2 [0] [0] 2 [espX5] [espX5]
* * ÷ NZ_CP009273 4294342 4294393 52 7 [0] [1] 2 ytcA/yjcS YtcA family lipoprotein/alkyl sulfatase YjcS
* * ÷ NZ_CP009273 4296619 4296633 15 2 [1] [1] 3 yjcS/alsK alkyl sulfatase YjcS/allose kinase
* * ÷ NZ_CP009273 4302868 4302934 67 2 [1] [1] 2 alsR/rpiB als operon DNA‑binding transcriptional repressor AlsR/bifunctional allose‑6‑phosphate isomerase/ribose‑5‑phosphate isomerase RpiB
* * ÷ NZ_CP009273 4316722 4316787 66 2 [0] [0] 2 yjdM/crfC zinc ribbon domain‑containing protein YjdM/clamp‑binding protein CrfC
* * ÷ NZ_CP009273 4327830 4327904 75 2 [0] [1] 2 adiY/adiA DNA‑binding transcriptional activator AdiY/arginine decarboxylase
* * ÷ NZ_CP009273 4342756 4342766 11 2 [0] [0] 2 ghoT type V toxin‑antitoxin system toxin GhoT
* * ÷ NZ_CP009273 4350032 4350120 89 4 [1] [1] 2 cadB/cadC cadaverine/lysine antiporter/lysine decarboxylation/transport transcriptional activator CadC
* * ÷ NZ_CP009273 4364060 4364213 154 3 [1] [1] 3 yjeJ/epmB YjeJ family protein/EF‑P beta‑lysylation protein EpmB
* * ÷ NZ_CP009273 4409595 4409605 11 6 [0] [0] 2 ulaG/ulaA L‑ascorbate 6‑phosphate lactonase/PTS ascorbate transporter subunit IIC
* * ÷ NZ_CP009273 4417252 4417269 18 2 [1] [1] 2 yjfZ/BW25113_RS21850 DUF2686 family protein/TetR/AcrR family transcriptional regulator
* * ÷ NZ_CP009273 4427375 4427405 31 3 [1] [0] 2 cysQ/BW25113_RS21900 3'(2'),5'‑bisphosphate nucleotidase CysQ/hypothetical protein
* * ÷ NZ_CP009273 4466642 4466897 256 2 [0] [0] 2 BW25113_RS22080 hypothetical protein
* * ÷ NZ_CP009273 4487783 4487856 74 2 [0] [1] 2 BW25113_RS22170/BW25113_RS22180 tyrosine‑type recombinase/integrase/IS3‑like element IS2 family transposase
* * ÷ NZ_CP009273 4493718 4493759 42 2 [1] [0] 2 insG/nanX IS4‑like element IS4 family transposase/MFS transporter
* * ÷ NZ_CP009273 4494801 4494850 50 2 [0] [0] 2 nanX MFS transporter
* * ÷ NZ_CP009273 4529466 4529532 67 2 [0] [1] 2 nanC/fimB N‑acetylneuraminic acid outer membrane channel NanC/type 1 fimbria switch DNA invertase FimB
* * ÷ NZ_CP009273 4531438 4531532 95 3 [1] [1] 4 fimB/fimE type 1 fimbria switch DNA invertase FimB/type 1 fimbria switch DNA invertase FimE
* * ÷ NZ_CP009273 4532453 4532498 46 2 [1] [0] 14 fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
* * ÷ NZ_CP009273 4532531 4532617 87 2 [1] [0] 2 fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
* * ÷ NZ_CP009273 4546339 4546425 87 2 [0] [1] 2 yjiC/idlP YjfZ/YjiC family protein/iraD leader peptide IdlP
* * ÷ NZ_CP009273 4562031 4562116 86 2 [1] [1] 2 yjiS/yjiT DUF1127 domain‑containing protein/protein YjiT
* * ÷ NZ_CP009273 4592979 4593041 63 3 [1] [1] 2 yjjP/yjjQ threonine/serine exporter ThrE family protein/response regulator transcription factor
* * ÷ NZ_CP009273 4611532 4611568 37 2 [1] [1] 2 deoD/yjjJ purine‑nucleoside phosphorylase/type II toxin‑antitoxin system HipA family toxin YjjJ

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 360104 =NA (NA)36 (1.570) 22/164 0.1 NA intergenic (‑35/+251) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
?NZ_CP009273 = 360286 NA (NA)intergenic (‑217/+69) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
* ? NZ_CP009273 1203246 =9 (0.390)5 (0.270) 4/132 1.3 35.4% coding (290/630 nt) BW25113_RS05990 hypothetical protein
?NZ_CP009273 1205075 = 11 (0.600)coding (40/540 nt) BW25113_RS06005 phage tail protein
* ? NZ_CP009273 = 19727510 (0.000)35 (1.520) 17/164 0.3 100% intergenic (‑297/‑483) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
?NZ_CP009273 = 2283592 NA (NA)intergenic (‑68/‑387) BW25113_RS11435/narP IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP
* ? NZ_CP009273 2282398 =NA (NA)39 (1.700) 12/164 0.5 100% pseudogene (3/2532 nt) yejO autotransporter YejO
?NZ_CP009273 = 3628486 0 (0.000)coding (286/1053 nt) yhiM DUF2776 domain‑containing protein
* ? NZ_CP009273 4532499 =0 (0.000)12 (0.590) 8/146 0.8 68.6% intergenic (+49/‑433) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
?NZ_CP009273 4532813 = 11 (0.540)intergenic (+363/‑119) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA