breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 49,910 T→G W30G (TGG→GGG)  folA → type 3 dihydrofolate reductase
MC JC 2,399,465 Δ7 bp coding (650‑656/939 nt) lrhA ← transcriptional regulator LrhA
RA 3,511,988 C→A E146* (GAG→TAG)  aroK ← shikimate kinase AroK

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 356981 357571 591 14 [0] [6] 8 lacA galactoside O‑acetyltransferase

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 = 287112NA (NA)62 (1.120) 35/164 0.3 77.5% intergenic (‑55/‑99) BW25113_RS01405/BW25113_RS01410 IS1‑like element IS1B family transposase/hypothetical protein
?NZ_CP009273 1903038 = 18 (0.320)intergenic (‑15/‑144) mgrB/yobH PhoP/PhoQ regulator MgrB/YobH family protein
* ? NZ_CP009273 360104 =NA (NA)77 (1.390) 38/164 0.2 NA intergenic (‑35/+251) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
?NZ_CP009273 = 360286 NA (NA)intergenic (‑217/+69) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
* ? NZ_CP009273 454243 =8 (0.140)87 (1.630) 45/158 0.1 91.9% intergenic (+87/‑101) clpX/lon ATP‑dependent protease ATP‑binding subunit ClpX/endopeptidase La
?NZ_CP009273 603467 = NA (NA)intergenic (+23/‑54) hokE/BW25113_RS03025 type I toxin‑antitoxin system toxin HokE/IS4‑like element IS421 family transposase
* ? NZ_CP009273 = 45425513 (0.230)49 (0.930) 26/156 0.5 79.8% intergenic (+99/‑89) clpX/lon ATP‑dependent protease ATP‑binding subunit ClpX/endopeptidase La
?NZ_CP009273 = 604803 NA (NA)intergenic (+170/+112) BW25113_RS03025/entD IS4‑like element IS421 family transposase/enterobactin synthase subunit EntD
* ? NZ_CP009273 = 1046001NA (NA)26 (0.470) 21/164 0.9 74.3% intergenic (+15/+418) BW25113_RS05135/cspH IS1‑like element IS1D family transposase/cold shock‑like protein CspH
?NZ_CP009273 = 1903046 9 (0.160)intergenic (‑23/‑136) mgrB/yobH PhoP/PhoQ regulator MgrB/YobH family protein
* ? NZ_CP009273 1203246 =48 (0.870)17 (0.380) 11/132 1.6 33.1% coding (290/630 nt) BW25113_RS05990 hypothetical protein
?NZ_CP009273 1205075 = 30 (0.670)coding (40/540 nt) BW25113_RS06005 phage tail protein
* ? NZ_CP009273 = 1391494NA (NA)54 (0.990) 28/162 0.5 91.6% intergenic (+145/‑128) BW25113_RS06980/ynaJ IS5‑like element IS5 family transposase/DUF2534 family protein
?NZ_CP009273 1972747 = 5 (0.090)intergenic (‑293/‑487) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
* ? NZ_CP009273 = 19727513 (0.050)61 (1.100) 33/164 0.3 95.3% intergenic (‑297/‑483) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
?NZ_CP009273 = 2283592 NA (NA)intergenic (‑68/‑387) BW25113_RS11435/narP IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP
* ? NZ_CP009273 4532499 =19 (0.340)16 (0.320) 12/146 1.6 33.7% intergenic (+49/‑433) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
?NZ_CP009273 4532813 = 46 (0.930)intergenic (+363/‑119) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
* ? NZ_CP009273 = 453250719 (0.340)10 (0.200) 8/146 2.3 24.1% intergenic (+57/‑425) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
?NZ_CP009273 = 4532803 46 (0.930)intergenic (+353/‑129) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA