breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
RA | 49,765 | C→T | intergenic (+134/‑58) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
RA | 1,858,499 | G→C | W131C (TGG→TGC) | yeaD → | D‑hexose‑6‑phosphate mutarotase |
MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
RA | 4,171,725 | G→C | D185H (GAC→CAC) | rpoB → | DNA‑directed RNA polymerase subunit beta |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NZ_CP009273 | 356973 | 357591 | 619 | 10 [8] | [9] 14 | [lacA] | [lacA] |
* | * | ÷ | NZ_CP009273 | 3627499 | 3646530–3645390 | 17892–19032 | 162 [0] | [9] 12 | [BW25113_RS18065]–BW25113_RS18160 | [BW25113_RS18065],yhiM,yhiN,pitA,uspB,uspA,BW25113_RS26225,BW25113_RS26230,dtpB,rsmJ,prlC,rlmJ,gorA,dinQ,arsR,arsB,arsC,BW25113_RS18155,BW25113_RS18160 |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | 360104 = | NA (NA) | 63 (0.920) | 38/160 | 0.3 | 55.8% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
? | NZ_CP009273 | = 360286 | 50 (0.730) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
* | ? | NZ_CP009273 | 1203246 = | 1 (0.010) | 60 (1.090) | 37/128 | 0.1 | 95.4% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
? | NZ_CP009273 | 1205075 = | 5 (0.090) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
* | ? | NZ_CP009273 | = 1203261 | 1 (0.010) | 34 (0.620) | 22/128 | 0.7 | 92.1% | coding (305/630 nt) | BW25113_RS05990 | hypothetical protein |
? | NZ_CP009273 | = 1205058 | 5 (0.090) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
* | ? | NZ_CP009273 | 2282398 = | NA (NA) | 161 (2.350) | 58/160 | 0.0 | 100% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
? | NZ_CP009273 | = 3627498 | 0 (0.000) | pseudogene (321/1607 nt) | BW25113_RS18065 | YhiJ/YhiL family protein | |||||
* | ? | NZ_CP009273 | 4532499 = | 2 (0.030) | 79 (1.300) | 35/142 | 0.2 | 87.9% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
? | NZ_CP009273 | 4532813 = | 20 (0.330) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
* | ? | NZ_CP009273 | = 4532507 | 2 (0.030) | 56 (0.920) | 30/142 | 0.4 | 83.7% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
? | NZ_CP009273 | = 4532803 | 20 (0.330) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |