breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 49,765 C→T intergenic (+134/‑58) kefC → / → folA glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase
RA 1,858,499 G→C W131C (TGG→TGC yeaD → D‑hexose‑6‑phosphate mutarotase
MC JC 2,399,465 Δ7 bp coding (650‑656/939 nt) lrhA ← transcriptional regulator LrhA
RA 4,171,725 G→C D185H (GAC→CAC)  rpoB → DNA‑directed RNA polymerase subunit beta

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 356973 357591 619 10 [8] [9] 14 [lacA] [lacA]
* * ÷ NZ_CP009273 3627499 3646530–3645390 17892–19032 162 [0] [9] 12 [BW25113_RS18065]–BW25113_RS18160 [BW25113_RS18065],yhiM,yhiN,pitA,uspB,uspA,BW25113_RS26225,BW25113_RS26230,dtpB,rsmJ,prlC,rlmJ,gorA,dinQ,arsR,arsB,arsC,BW25113_RS18155,BW25113_RS18160

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 360104 =NA (NA)63 (0.920) 38/160 0.3 55.8% intergenic (‑35/+251) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
?NZ_CP009273 = 360286 50 (0.730)intergenic (‑217/+69) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
* ? NZ_CP009273 1203246 =1 (0.010)60 (1.090) 37/128 0.1 95.4% coding (290/630 nt) BW25113_RS05990 hypothetical protein
?NZ_CP009273 1205075 = 5 (0.090)coding (40/540 nt) BW25113_RS06005 phage tail protein
* ? NZ_CP009273 = 12032611 (0.010)34 (0.620) 22/128 0.7 92.1% coding (305/630 nt) BW25113_RS05990 hypothetical protein
?NZ_CP009273 = 1205058 5 (0.090)coding (57/540 nt) BW25113_RS06005 phage tail protein
* ? NZ_CP009273 2282398 =NA (NA)161 (2.350) 58/160 0.0 100% pseudogene (3/2532 nt) yejO autotransporter YejO
?NZ_CP009273 = 3627498 0 (0.000)pseudogene (321/1607 nt) BW25113_RS18065 YhiJ/YhiL family protein
* ? NZ_CP009273 4532499 =2 (0.030)79 (1.300) 35/142 0.2 87.9% intergenic (+49/‑433) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
?NZ_CP009273 4532813 = 20 (0.330)intergenic (+363/‑119) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
* ? NZ_CP009273 = 45325072 (0.030)56 (0.920) 30/142 0.4 83.7% intergenic (+57/‑425) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
?NZ_CP009273 = 4532803 20 (0.330)intergenic (+353/‑129) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA