breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 49,765 C→T intergenic (+134/‑58) kefC → / → folA glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase
RA 49,898 G→A A26T (GCC→ACC)  folA → type 3 dihydrofolate reductase
RA 49,912 G→T W30C (TGG→TGT)  folA → type 3 dihydrofolate reductase
MC JC 2,399,465 Δ7 bp coding (650‑656/939 nt) lrhA ← transcriptional regulator LrhA

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 17122 17194 73 2 [0] [1] 3 mokC/nhaA type I toxin‑antitoxin system toxin MokC/Na+/H+ antiporter NhaA
* * ÷ NZ_CP009273 80516 80592 77 2 [1] [0] 3 leuL/leuO leu operon leader peptide/transcriptional regulator LeuO
* * ÷ NZ_CP009273 151618 151619 2 2 [0] [1] 3 htrE Yad fimbria usher protein HtrE
* * ÷ NZ_CP009273 153466 153519 54 2 [1] [1] 3 yadN/folK fimbrial protein/2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine diphosphokinase
* * ÷ NZ_CP009273 153610 153736 127 3 [1] [1] 2 yadN/folK fimbrial protein/2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine diphosphokinase
* * ÷ NZ_CP009273 233610 233763 154 2 [0] [0] 2 BW25113_RS01085/BW25113_RS01090 tRNA‑Asp/lipoprotein
* * ÷ NZ_CP009273 235112 235112 1 2 [0] [0] 2 BW25113_RS01095 hypothetical protein
* * ÷ NZ_CP009273 242685 242712 28 3 [1] [1] 2 yafQ type II toxin‑antitoxin system mRNA interferase toxin YafQ
* * ÷ NZ_CP009273 243096 243128 33 3 [1] [1] 2 dinJ/yafL type II toxin‑antitoxin system antitoxin DinJ/C40 family peptidase
* * ÷ NZ_CP009273 244462 244483 22 2 [0] [1] 2 rayT REP‑associated tyrosine transposase RayT
* * ÷ NZ_CP009273 295814 295829 16 3 [1] [1] 4 paoC aldehyde oxidoreductase molybdenum‑binding subunit PaoC
* * ÷ NZ_CP009273 356981 357574 594 3 [0] [1] 3 [lacA] [lacA]
* * ÷ NZ_CP009273 380259 380309 51 2 [1] [1] 2 BW25113_RS01880/tauA PIG‑L family deacetylase/taurine ABC transporter substrate‑binding protein
* * ÷ NZ_CP009273 380400 380499 100 2 [1] [1] 3 BW25113_RS01880/tauA PIG‑L family deacetylase/taurine ABC transporter substrate‑binding protein
* * ÷ NZ_CP009273 518526 518599 74 2 [0] [0] 2 ybbP/rhsD ABC transporter permease/rhs element protein RhsD
* * ÷ NZ_CP009273 523770 523805 36 2 [1] [0] 2 BW25113_RS02575 RHS domain‑containing protein
* * ÷ NZ_CP009273 533004 533039 36 2 [0] [1] 2 glxR/ybbW 2‑hydroxy‑3‑oxopropionate reductase/putative allantoin permease
* * ÷ NZ_CP009273 564142 564157 16 2 [0] [0] 2 [BW25113_RS25485] [BW25113_RS25485]
* * ÷ NZ_CP009273 569831 569871 41 5 [1] [0] 2 quuD/BW25113_RS02850 antitermination protein QuuD/IS5‑like element IS5 family transposase
* * ÷ NZ_CP009273 572364 572412 49 3 [1] [0] 2 BW25113_RS02855/essD porin/phage lysis protein EssD
* * ÷ NZ_CP009273 578771 578984 214 3 [1] [0] 4 BW25113_RS26085/appY tail fiber assembly protein/DNA‑binding transcriptional activator AppY
* * ÷ NZ_CP009273 579911 579961 51 2 [0] [1] 3 appY/ompT DNA‑binding transcriptional activator AppY/omptin family outer membrane protease OmpT
* * ÷ NZ_CP009273 581134 581199 66 2 [1] [0] 2 ompT/envY omptin family outer membrane protease OmpT/DNA‑binding transcriptional regulator EnvY
* * ÷ NZ_CP009273 613504 613576 73 3 [1] [0] 2 entF/wzz(fepE) enterobactin non‑ribosomal peptide synthetase EntF/LPS O‑antigen length regulator Wzz(fepE)
* * ÷ NZ_CP009273 613858 613873 16 2 [1] [0] 2 wzz(fepE) LPS O‑antigen length regulator Wzz(fepE)
* * ÷ NZ_CP009273 640484 640493 10 2 [0] [0] 2 rna/citT ribonuclease I/citrate/succinate antiporter CitT
* * ÷ NZ_CP009273 647496 647633 138 2 [0] [1] 2 citC/dpiB [citrate (pro‑3S)‑lyase] ligase/sensor histidine kinase DpiB
* * ÷ NZ_CP009273 651710 651793 84 2 [1] [1] 3 dcuC/pagP anaerobic C4‑dicarboxylate transporter DcuC/lipid IV(A) palmitoyltransferase PagP
* * ÷ NZ_CP009273 674228 674288 61 3 [1] [0] 2 djlB J domain‑containing protein
* * ÷ NZ_CP009273 703467 703524 58 3 [1] [1] 2 glnS/chiP glutamine‑‑tRNA ligase/chitoporin
* * ÷ NZ_CP009273 724900 724956 57 2 [1] [1] 2 ybfA/rhsC YbfA family protein/rhs element protein RhsC
* * ÷ NZ_CP009273 731696 731696 1 2 [0] [0] 2 BW25113_RS03640/ybfQ hypothetical protein/ISAs1 family transposase
* * ÷ NZ_CP009273 748336 748402 67 2 [0] [1] 2 ybgD/gltA fimbrial protein/citrate synthase
* * ÷ NZ_CP009273 748493 748536 44 2 [1] [1] 2 ybgD/gltA fimbrial protein/citrate synthase
* * ÷ NZ_CP009273 798848–798900 798949 50–102 2 [0] [1] 2 ybhI/ybhJ anion permease/hydratase
* * ÷ NZ_CP009273 833486 833527 42 2 [1] [1] 2 ybiJ/ybiI DUF1471 family protein YbiJ/C4‑type zinc finger protein YbiI
* * ÷ NZ_CP009273 845863 845876 14 2 [1] [1] 2 BW25113_RS25505/ompX protein YliM/outer membrane protein OmpX
* * ÷ NZ_CP009273 869158 869180 23 2 [1] [1] 3 pdeI EAL domain‑containing protein
* * ÷ NZ_CP009273 876136 876212 77 3 [1] [1] 2 [dacC] [dacC]
* * ÷ NZ_CP009273 896095 896171 77 4 [1] [1] 2 artJ/artM ABC transporter substrate‑binding protein ArtJ/arginine ABC transporter permease ArtM
* * ÷ NZ_CP009273 902985 903061 77 4 [0] [1] 2 ybjT SDR family oxidoreductase
* * ÷ NZ_CP009273 950041 950109 69 2 [0] [0] 2 focA/ycaO formate transporter FocA/30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
* * ÷ NZ_CP009273 950153 950220 68 2 [0] [0] 2 focA/ycaO formate transporter FocA/30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
* * ÷ NZ_CP009273 982718 982765 48 3 [1] [1] 2 ompF/asnS porin OmpF/asparagine‑‑tRNA ligase
* * ÷ NZ_CP009273 993106 993254 149 2 [1] [1] 2 ssuE/elfA NADPH‑dependent FMN reductase/fimbrial protein
* * ÷ NZ_CP009273 993850 993896 47 2 [1] [0] 2 [elfA] [elfA]
* * ÷ NZ_CP009273 1015896 1015924 29 3 [1] [1] 3 sulA cell division inhibitor SulA
* * ÷ NZ_CP009273 1023294 1023308 15 2 [0] [0] 2 yccT/yccU DUF2057 family protein/CoA‑binding protein
* * ÷ NZ_CP009273 1059742 1059762 21 4 [1] [0] 2 yccE YccE family protein
* * ÷ NZ_CP009273 1060554 1060564 11 2 [1] [1] 3 yccE YccE family protein
* * ÷ NZ_CP009273 1089376 1089393 18 2 [1] [1] 2 dgcT GGDEF domain‑containing protein
* * ÷ NZ_CP009273 1098896 1099011 116 2 [1] [1] 3 csgD/csgB biofilm master transcriptional regulator CsgD/curli minor subunit CsgB
* * ÷ NZ_CP009273 1114599 1114675 77 2 [1] [1] 2 yceJ/BW25113_RS05515 cytochrome b/YceO family protein
* * ÷ NZ_CP009273 1164412 1164457 46 3 [1] [0] 2 comR/bhsA TetR family copper‑responsive transcriptional repressor ComR/multiple stress resistance protein BhsA
* * ÷ NZ_CP009273 1192689 1192721 33 2 [0] [1] 3 ymfD class I SAM‑dependent methyltransferase
* * ÷ NZ_CP009273 1193189 1193275 87 2 [1] [1] 2 BW25113_RS05920 hypothetical protein
* * ÷ NZ_CP009273 1206632 1206760 129 2 [1] [1] 2 [mcrA] [mcrA]
* * ÷ NZ_CP009273 1207528 1207541 14 4 [0] [1] 2 iraM/BW25113_RS25985 anti‑adapter protein IraM/protein YmgK
* * ÷ NZ_CP009273 1207647 1207691 45 2 [1] [0] 4 iraM/BW25113_RS25985 anti‑adapter protein IraM/protein YmgK
* * ÷ NZ_CP009273 1207782 1207846 65 3 [1] [1] 2 BW25113_RS25985/BW25113_RS25535 protein YmgK/hypothetical protein
* * ÷ NZ_CP009273 1208006 1208047 42 3 [1] [0] 2 BW25113_RS25535 hypothetical protein
* * ÷ NZ_CP009273 1208094 1208179 86 2 [0] [1] 3 [BW25113_RS25535]–[ycgX] [BW25113_RS25535],[ycgX]
* * ÷ NZ_CP009273 1209623 1209715 93 2 [1] [1] 2 bluR/bluF DNA‑binding transcriptional repressor BluR/blue light‑responsive regulator BluF
* * ÷ NZ_CP009273 1211750 1211841 92 3 [1] [1] 2 [ymgA]–[ariR] [ymgA],[ariR]
* * ÷ NZ_CP009273 1212124 1212173 50 2 [1] [1] 2 ariR/BW25113_RS06060 biofilm/acid‑resistance regulator AriR/hypothetical protein
* * ÷ NZ_CP009273 1215751 1215812 62 3 [1] [1] 2 BW25113_RS25990 autotransporter outer membrane beta‑barrel domain‑containing protein
* * ÷ NZ_CP009273 1218096 1218126 31 3 [1] [1] 6 [ymgD]–[ymgG] [ymgD],[ymgG]
* * ÷ NZ_CP009273 1225878 1225903 26 2 [1] [0] 2 hlyE/umuD hemolysin HlyE/translesion error‑prone DNA polymerase V autoproteolytic subunit
* * ÷ NZ_CP009273 1225959 1225988 30 2 [0] [0] 2 hlyE/umuD hemolysin HlyE/translesion error‑prone DNA polymerase V autoproteolytic subunit
* * ÷ NZ_CP009273 1251656 1251775 120 2 [0] [1] 2 ycgV/ychF autotransporter outer membrane beta‑barrel domain‑containing protein/redox‑regulated ATPase YchF
* * ÷ NZ_CP009273 1267323 1267410 88 2 [1] [1] 2 chaA/chaB sodium‑potassium/proton antiporter ChaA/putative cation transport regulator ChaB
* * ÷ NZ_CP009273 1275060 1275066 7 2 [0] [1] 2 narK/narG nitrate transporter NarK/nitrate reductase subunit alpha
* * ÷ NZ_CP009273 1287851 1287922 72 2 [1] [1] 3 galU/hns UTP‑‑glucose‑1‑phosphate uridylyltransferase GalU/DNA‑binding transcriptional regulator H‑NS
* * ÷ NZ_CP009273 1294937 1294969 33 2 [1] [0] 2 BW25113_RS25865 hypothetical protein
* * ÷ NZ_CP009273 1297305 1297361 57 2 [1] [1] 2 oppB oligopeptide ABC transporter permease OppB
* * ÷ NZ_CP009273 1310152 1310216 65 2 [1] [1] 2 yciG general stress protein
* * ÷ NZ_CP009273 1310443 1310476 34 2 [0] [1] 2 yciG/trpA general stress protein/tryptophan synthase subunit alpha
* * ÷ NZ_CP009273 1327957 1328011 55 3 [1] [1] 2 topA/cysB type I DNA topoisomerase/HTH‑type transcriptional regulator CysB
* * ÷ NZ_CP009273 1345851 1345897 47 2 [1] [1] 5 ycjD DUF559 domain‑containing protein
* * ÷ NZ_CP009273 1393857 1393922 66 2 [1] [1] 3 fnr/ogt fumarate/nitrate reduction transcriptional regulator Fnr/methylated‑DNA‑‑[protein]‑cysteine S‑methyltransferase
* * ÷ NZ_CP009273 1400055 1400133 79 2 [1] [1] 3 abgR/smrA LysR family transcriptional regulator/DNA endonuclease SmrA
* * ÷ NZ_CP009273 1407189 1407197 9 2 [1] [0] 2 intR site‑specific integrase
* * ÷ NZ_CP009273 1415836 1415877 42 3 [0] [1] 2 ydaU YdaU family protein
* * ÷ NZ_CP009273 1417986 1417986 1 2 [0] [0] 2 BW25113_RS26130/trkG hypothetical protein/Trk system potassium transporter TrkG
* * ÷ NZ_CP009273 1418154 1418218 65 2 [1] [0] 2 trkG Trk system potassium transporter TrkG
* * ÷ NZ_CP009273 1418257 1418287 31 2 [0] [1] 2 trkG Trk system potassium transporter TrkG
* * ÷ NZ_CP009273 1437127 1437155 29 7 [0] [1] 2 ldhA/ydbH D‑lactate dehydrogenase/YdbH family protein
* * ÷ NZ_CP009273 1459358 1459463 106 4 [1] [0] 2 [BW25113_RS25580] [BW25113_RS25580]
* * ÷ NZ_CP009273 1459506 1459554 49 2 [0] [1] 2 BW25113_RS25580/BW25113_RS07350 hypothetical protein/autotransporter domain‑containing protein
* * ÷ NZ_CP009273 1521105 1521201 97 2 [0] [1] 2 [yncG]–[yncH] [yncG],[yncH]
* * ÷ NZ_CP009273 1524405 1524472 68 2 [0] [0] 5 BW25113_RS26145 hypothetical protein
* * ÷ NZ_CP009273 1539498 1539508 11 2 [1] [0] 2 BW25113_RS07710 leucine‑rich repeat domain‑containing protein
* * ÷ NZ_CP009273 1576989 1577050 62 2 [0] [1] 2 ydeN/ydeO sulfatase/acid stress response transcriptional regulator YdeO
* * ÷ NZ_CP009273 1618916 1618971 56 2 [0] [1] 2 ydeI/ydeJ YdeI family stress tolerance OB fold protein/2‑oxo‑tetronate isomerase
* * ÷ NZ_CP009273 1625198 1625208 11 2 [0] [0] 2 ydfI/ydfJ mannitol dehydrogenase family protein/MHS family MFS transporter
* * ÷ NZ_CP009273 1631927 1631996 70 5 [0] [1] 2 gnsB addiction module toxin, GnsA/GnsB family
* * ÷ NZ_CP009273 1633002 1633053 52 3 [1] [1] 2 cspI/rzpQ cold shock protein CspI/DUF2514 domain‑containing protein
* * ÷ NZ_CP009273 1634963 1635030 68 2 [1] [1] 2 essD/ynfU phage lysis protein EssD/putative zinc‑binding protein YnfU
* * ÷ NZ_CP009273 1635231 1635285 55 2 [1] [0] 5 [ynfU] [ynfU]
* * ÷ NZ_CP009273 1691816 1691841 26 6 [1] [1] 2 hdhA 7‑alpha‑hydroxysteroid dehydrogenase
* * ÷ NZ_CP009273 1748959 1749096 138 2 [0] [1] 2 ydhY/fumD ferredoxin‑like protein/fumarate hydratase FumD
* * ÷ NZ_CP009273 1769784 1769790 7 2 [0] [1] 3 aroD/ydiF type I 3‑dehydroquinate dehydratase/acyl CoA:acetate/3‑ketoacid CoA transferase
* * ÷ NZ_CP009273 1781556 1781603 48 3 [1] [1] 2 ppsA/ppsR phosphoenolpyruvate synthase/posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR
* * ÷ NZ_CP009273 1807471 1807544 74 2 [1] [1] 3 BW25113_RS09050/cedA hypothetical protein/cell division activator CedA
* * ÷ NZ_CP009273 1815511 1815578 68 2 [1] [1] 2 [chbB] [chbB]
* * ÷ NZ_CP009273 1888071 1888129 59 2 [1] [0] 2 yoaB/yoaC RidA family protein/DUF1889 family protein
* * ÷ NZ_CP009273 1896144 1896149 6 3 [1] [0] 2 yoaE/manX CNNM family cation transport protein YoaE/PTS mannose transporter subunit IIAB
* * ÷ NZ_CP009273 1940410 1940505 96 2 [0] [1] 3 [yobI] [yobI]
* * ÷ NZ_CP009273 1952534 1952571 38 3 [1] [0] 4 torY/cutC NapC/NirT family cytochrome c/copper homeostasis protein CutC
* * ÷ NZ_CP009273 1980113 1980226 114 2 [1] [1] 2 araF/ftnB arabinose ABC transporter substrate‑binding protein AraF/non‑heme ferritin‑like protein
* * ÷ NZ_CP009273 1982078 1982144 67 3 [1] [0] 3 yecR/ftnA YecR‑like lipofamily protein/non‑heme ferritin
* * ÷ NZ_CP009273 1989092 1989163 72 2 [1] [0] 2 [BW25113_RS25650] [BW25113_RS25650]
* * ÷ NZ_CP009273 1990344 1990385 42 3 [1] [0] 2 sdiA/yecC transcriptional regulator SdiA/L‑cystine ABC transporter ATP‑binding protein YecC
* * ÷ NZ_CP009273 2005750 2005772 23 2 [1] [1] 2 BW25113_RS10120 DUF5503 domain‑containing protein
* * ÷ NZ_CP009273 2027317 2027382 66 2 [0] [0] 2 drpB/ompC cell division protein DrpB/porin OmpC
* * ÷ NZ_CP009273 2035738 2035792 55 2 [0] [1] 2 zinT/yodB metal‑binding protein ZinT/cytochrome b
* * ÷ NZ_CP009273 2050118 2050141 24 4 [1] [0] 2 amn/yeeN AMP nucleosidase/YebC/PmpR family DNA‑binding transcriptional regulator
* * ÷ NZ_CP009273 2050183 2050210 28 2 [0] [0] 2 amn/yeeN AMP nucleosidase/YebC/PmpR family DNA‑binding transcriptional regulator
* * ÷ NZ_CP009273 2051096 2051129 34 2 [0] [0] 2 yeeN/BW25113_RS10360 YebC/PmpR family DNA‑binding transcriptional regulator/tRNA‑Asn
* * ÷ NZ_CP009273 2062035 2062053 19 2 [1] [0] 2 BW25113_RS10415/BW25113_RS24005 IS5‑like element IS5 family transposase/TonB‑dependent receptor plug domain‑containing protein
* * ÷ NZ_CP009273 2093208 2093256 49 2 [1] [0] 6 ugd/gndA UDP‑glucose 6‑dehydrogenase/NADP‑dependent phosphogluconate dehydrogenase
* * ÷ NZ_CP009273 2096859 2096869 11 2 [0] [0] 2 wbbL N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL
* * ÷ NZ_CP009273 2097441 2097578 138 2 [1] [0] 2 wbbK glycosyltransferase family 1 protein
* * ÷ NZ_CP009273 2100079 2100148 70 2 [1] [1] 3 wzy O16 family O‑antigen polymerase
* * ÷ NZ_CP009273 2100194 2100218 25 2 [0] [1] 2 wzy O16 family O‑antigen polymerase
* * ÷ NZ_CP009273 2101567 2101624 58 2 [0] [0] 2 glf UDP‑galactopyranose mutase
* * ÷ NZ_CP009273 2103058 2103136 79 2 [1] [0] 2 [wzx]–[rfbC] [wzx],[rfbC]
* * ÷ NZ_CP009273 2103180 2103214 35 2 [0] [1] 4 rfbC dTDP‑4‑dehydrorhamnose 3,5‑epimerase
* * ÷ NZ_CP009273 2131186 2131196 11 2 [0] [0] 2 wza/yegH polysaccharide export protein Wza/TerC family protein
* * ÷ NZ_CP009273 2144499 2144514 16 2 [0] [0] 2 yegI/yegJ protein kinase YegI/DUF2314 domain‑containing protein
* * ÷ NZ_CP009273 2144567 2144591 25 2 [0] [1] 4 yegI/yegJ protein kinase YegI/DUF2314 domain‑containing protein
* * ÷ NZ_CP009273 2185787 2185954 168 3 [1] [1] 5 yehD/yehE fimbrial protein/YehE family protein
* * ÷ NZ_CP009273 2227317 2227344 28 3 [1] [1] 2 [yeiS] [yeiS]
* * ÷ NZ_CP009273 2300310 2300381 72 2 [1] [0] 4 mqo/yojI malate dehydrogenase (quinone)/microcin J25 efflux ABC transporter YojI
* * ÷ NZ_CP009273 2359281 2359287 7 2 [0] [0] 2 ais/arnB lipopolysaccharide core heptose(II)‑phosphate phosphatase Ais/UDP‑4‑amino‑4‑deoxy‑L‑arabinose aminotransferase
* * ÷ NZ_CP009273 2370765 2370779 15 2 [0] [1] 2 menH 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase
* * ÷ NZ_CP009273 2376947 2376960 14 2 [0] [0] 2 elaD deubiquitinase ElaD
* * ÷ NZ_CP009273 2449344 2449352 9 2 [1] [0] 2 yfcV/sixA fimbrial protein/phosphohistidine phosphatase SixA
* * ÷ NZ_CP009273 2456445 2456490 46 2 [0] [1] 3 fadL/BW25113_RS12235 long‑chain fatty acid transporter FadL/hypothetical protein
* * ÷ NZ_CP009273 2462795 2462836 42 2 [1] [0] 3 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2462936 2463011 76 3 [1] [0] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2463639 2463699 61 2 [1] [0] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2569309 2569349 41 2 [1] [0] 3 eutS/maeB ethanolamine utilization microcompartment protein EutS/NADP‑dependent oxaloacetate‑decarboxylating malate dehydrogenase
* * ÷ NZ_CP009273 2584448 2584495 48 2 [0] [0] 2 ypfM/yffB protein YpfM/ArsC family reductase
* * ÷ NZ_CP009273 2622963 2623019 57 2 [0] [0] 2 yfgG/yfgH YfgG family protein/glycine zipper 2TM domain‑containing protein
* * ÷ NZ_CP009273 2623057 2623080 24 2 [0] [0] 2 yfgG/yfgH YfgG family protein/glycine zipper 2TM domain‑containing protein
* * ÷ NZ_CP009273 2646985 2647045 61 2 [1] [1] 2 sseA/timP 3‑mercaptopyruvate sulfurtransferase/small toxic inner membrane protein TimP
* * ÷ NZ_CP009273 2693319 2693378 60 2 [1] [1] 2 yfhL/shoB 4Fe‑4S dicluster ferredoxin YfhL/type I toxin‑antitoxin system toxin ShoB
* * ÷ NZ_CP009273 2735059 2735124 66 3 [1] [1] 3 [yfiL] [yfiL]
* * ÷ NZ_CP009273 2751077 2751097 21 2 [1] [1] 3 BW25113_RS13685 hypothetical protein
* * ÷ NZ_CP009273 2753632 2753705 74 2 [0] [1] 2 yfjI YfjI family protein
* * ÷ NZ_CP009273 2768244 2768320 77 3 [1] [1] 3 BW25113_RS13770 hypothetical protein
* * ÷ NZ_CP009273 2779434 2779451 18 2 [0] [0] 2 BW25113_RS13825/BW25113_RS26005 tRNA‑Ile/alpha‑amylase family glycosyl hydrolase
* * ÷ NZ_CP009273 2779873 2779892 20 2 [0] [0] 2 BW25113_RS26005 alpha‑amylase family glycosyl hydrolase
* * ÷ NZ_CP009273 2781819 2781910 92 2 [1] [1] 2 BW25113_RS26005 alpha‑amylase family glycosyl hydrolase
* * ÷ NZ_CP009273 2790394 2790406 13 2 [1] [1] 3 yqaE/ygaV YqaE/Pmp3 family membrane protein/metalloregulator ArsR/SmtB family transcription factor
* * ÷ NZ_CP009273 2897155 2897218 64 2 [0] [0] 2 ygcE/queE FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE
* * ÷ NZ_CP009273 2897771 2897775 5 2 [0] [0] 2 ygcE/queE FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE
* * ÷ NZ_CP009273 2897822 2897854 33 2 [0] [1] 2 ygcE/queE FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE
* * ÷ NZ_CP009273 2898913 2899020 108 2 [1] [0] 5 [BW25113_RS14445] [BW25113_RS14445]
* * ÷ NZ_CP009273 2975758 2975787 30 2 [0] [0] 2 araE/kduD arabinose‑proton symporter AraE/2‑dehydro‑3‑deoxy‑D‑gluconate 5‑dehydrogenase KduD
* * ÷ NZ_CP009273 2988543 2988594 52 2 [0] [0] 2 BW25113_RS14850/BW25113_RS26010 response regulator transcription factor/hypothetical protein
* * ÷ NZ_CP009273 3165570 3165581 12 2 [0] [1] 2 [ygiZ] [ygiZ]
* * ÷ NZ_CP009273 3246086 3246135 50 2 [1] [1] 3 yhaH/yhaI DUF805 domain‑containing protein/DUF805 domain‑containing protein
* * ÷ NZ_CP009273 3260652 3260664 13 2 [0] [1] 2 tdcA/tdcR transcriptional regulator TdcA/transcriptional activator TdcR
* * ÷ NZ_CP009273 3262545 3262560 16 2 [0] [0] 2 yhaC YhaC family protein
* * ÷ NZ_CP009273 3262622 3262713 92 2 [0] [1] 3 yhaC YhaC family protein
* * ÷ NZ_CP009273 3280621 3280708 88 2 [1] [0] 2 agaI/yraH galactosamine‑6‑phosphate isomerase/fimbrial protein
* * ÷ NZ_CP009273 3354247 3354290 44 2 [1] [0] 2 gltD/gltF glutamate synthase subunit GltD/DUF1120 domain‑containing protein
* * ÷ NZ_CP009273 3354471 3354483 13 4 [0] [0] 2 gltD/gltF glutamate synthase subunit GltD/DUF1120 domain‑containing protein
* * ÷ NZ_CP009273 3354528 3354538 11 2 [0] [1] 6 [gltF] [gltF]
* * ÷ NZ_CP009273 3367998 3368027 30 2 [0] [0] 2 nanR/dcuC transcriptional regulator NanR/anaerobic C4‑dicarboxylate transporter DcuC
* * ÷ NZ_CP009273 3403491 3403499 9 2 [1] [0] 2 prmA/dusB 50S ribosomal protein L11 methyltransferase/tRNA dihydrouridine synthase DusB
* * ÷ NZ_CP009273 3448797 3448831 35 2 [1] [0] 2 gspA/gspC type II secretion system protein GspA/type II secretion system protein GspC
* * ÷ NZ_CP009273 3449015 3449050 36 2 [0] [1] 2 gspC type II secretion system protein GspC
* * ÷ NZ_CP009273 3460382 3460440 59 2 [1] [0] 2 bfd/chiA bacterioferritin‑associated ferredoxin/bifunctional chitinase/lysozyme
* * ÷ NZ_CP009273 3463349 3463416 68 2 [1] [1] 2 chiA/tuf bifunctional chitinase/lysozyme/elongation factor Tu
* * ÷ NZ_CP009273 3490298 3490373 76 4 [1] [1] 3 [nirC] [nirC]
* * ÷ NZ_CP009273 3575072 3575136 65 2 [1] [1] 3 yhhY/hcp N‑acetyltransferase/Hcp1 family type VI secretion system effector
* * ÷ NZ_CP009273 3576006 3576032 27 4 [0] [1] 2 hcp Hcp1 family type VI secretion system effector
* * ÷ NZ_CP009273 3576442 3576466 25 2 [1] [0] 2 BW25113_RS17825 YrhA family protein
* * ÷ NZ_CP009273 3576545 3576564 20 2 [0] [1] 2 BW25113_RS17825 YrhA family protein
* * ÷ NZ_CP009273 3751302 3751381 80 2 [0] [1] 2 [selB] [selB]
* * ÷ NZ_CP009273 3763046 3763129 84 2 [1] [1] 3 BW25113_RS26240 Imm57 family immunity protein
* * ÷ NZ_CP009273 3763179 3763253 75 2 [0] [1] 3 BW25113_RS26240/yibH Imm57 family immunity protein/HlyD family secretion protein
* * ÷ NZ_CP009273 3787041 3787056 16 3 [1] [0] 2 [yibB] [yibB]
* * ÷ NZ_CP009273 3790372 3790454 83 2 [0] [0] 2 waaL O‑antigen ligase
* * ÷ NZ_CP009273 3790624 3790686 63 5 [1] [1] 2 waaL O‑antigen ligase
* * ÷ NZ_CP009273 3791616 3791619 4 2 [0] [0] 2 waaU glycosyltransferase family 9 protein
* * ÷ NZ_CP009273 3794405 3794453 49 3 [1] [0] 2 rfaJ lipopolysaccharide 1,2‑glucosyltransferase RfaJ
* * ÷ NZ_CP009273 3797692 3797757 66 2 [0] [0] 2 rfaS LPS core biosynthesis protein RfaS
* * ÷ NZ_CP009273 3798387 3798397 11 2 [1] [0] 2 rfaS LPS core biosynthesis protein RfaS
* * ÷ NZ_CP009273 3822201 3822229 29 2 [1] [1] 2 gltS/xanP sodium/glutamate symporter/xanthine/proton symporter XanP
* * ÷ NZ_CP009273 3830043 3830157 115 2 [1] [1] 2 BW25113_RS26245/setC virulence RhuM family protein/sugar efflux transporter
* * ÷ NZ_CP009273 3881631 3881689 59 2 [1] [1] 2 mnmE/tnaC tRNA uridine‑5‑carboxymethylaminomethyl(34) synthesis GTPase MnmE/tryptophanase leader peptide
* * ÷ NZ_CP009273 3900153 3900176 24 3 [0] [1] 2 bglG/phoU transcriptional antiterminator BglG/phosphate signaling complex protein PhoU
* * ÷ NZ_CP009273 3916342 3916353 12 6 [1] [1] 3 atpI/rsmG F0F1 ATP synthase subunit I/16S rRNA (guanine(527)‑N(7))‑methyltransferase RsmG
* * ÷ NZ_CP009273 3943496 3943500 5 2 [0] [0] 2 yifB/ilvL YifB family Mg chelatase‑like AAA ATPase/ilv operon leader peptide
* * ÷ NZ_CP009273 3943536 3943611 76 2 [0] [1] 2 yifB/ilvL YifB family Mg chelatase‑like AAA ATPase/ilv operon leader peptide
* * ÷ NZ_CP009273 3996503 3996577 75 2 [1] [1] 3 BW25113_RS19825 hypothetical protein
* * ÷ NZ_CP009273 4037428 4037482 55 2 [1] [0] 4 dsbA/yihF thiol:disulfide interchange protein DsbA/YdgA family protein
* * ÷ NZ_CP009273 4072442 4072450 9 2 [1] [0] 2 BW25113_RS26270/yiiE hypothetical protein/ribbon‑helix‑helix domain‑containing protein
* * ÷ NZ_CP009273 4212368 4212409 42 2 [0] [0] 4 espL4 type III secretion system effector EspL4
* * ÷ NZ_CP009273 4225519 4225539 21 3 [1] [0] 2 pgi/yjbE glucose‑6‑phosphate isomerase/exopolysaccharide production protein YjbE
* * ÷ NZ_CP009273 4225623 4225724 102 6 [0] [1] 3 pgi/yjbE glucose‑6‑phosphate isomerase/exopolysaccharide production protein YjbE
* * ÷ NZ_CP009273 4241582 4241679 98 2 [0] [1] 2 BW25113_RS20970 SopA family protein
* * ÷ NZ_CP009273 4272982 4273053 72 3 [1] [1] 2 [espX5] [espX5]
* * ÷ NZ_CP009273 4327872 4327921 50 3 [0] [1] 4 adiY/adiA DNA‑binding transcriptional activator AdiY/arginine decarboxylase
* * ÷ NZ_CP009273 4350067 4350114 48 2 [1] [1] 2 cadB/cadC cadaverine/lysine antiporter/lysine decarboxylation/transport transcriptional activator CadC
* * ÷ NZ_CP009273 4400043 4400060 18 2 [1] [1] 2 yjfI DUF2170 family protein
* * ÷ NZ_CP009273 4427367 4427386 20 2 [1] [1] 2 cysQ/BW25113_RS21900 3'(2'),5'‑bisphosphate nucleotidase CysQ/hypothetical protein
* * ÷ NZ_CP009273 4465832 4465893 62 3 [1] [1] 3 BW25113_RS22080 hypothetical protein
* * ÷ NZ_CP009273 4466753 4466947 195 3 [1] [1] 3 BW25113_RS22080 hypothetical protein
* * ÷ NZ_CP009273 4487821 4487864 44 3 [0] [1] 2 BW25113_RS22170/BW25113_RS22180 tyrosine‑type recombinase/integrase/IS3‑like element IS2 family transposase
* * ÷ NZ_CP009273 4494794 4494805 12 2 [0] [1] 3 nanX MFS transporter
* * ÷ NZ_CP009273 4531453 4531454 2 2 [0] [0] 2 fimB/fimE type 1 fimbria switch DNA invertase FimB/type 1 fimbria switch DNA invertase FimE
* * ÷ NZ_CP009273 4531500 4531510 11 2 [0] [0] 2 fimB/fimE type 1 fimbria switch DNA invertase FimB/type 1 fimbria switch DNA invertase FimE
* * ÷ NZ_CP009273 4532575 4532589 15 4 [1] [1] 2 fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
* * ÷ NZ_CP009273 4561988 4562069 82 2 [1] [1] 2 yjiS/yjiT DUF1127 domain‑containing protein/protein YjiT
* * ÷ NZ_CP009273 4593002 4593089 88 3 [1] [1] 2 yjjP/yjjQ threonine/serine exporter ThrE family protein/response regulator transcription factor

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 360104 =NA (NA)20 (0.880) 17/164 0.3 52.6% intergenic (‑35/+251) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
?NZ_CP009273 = 360286 18 (0.790)intergenic (‑217/+69) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
* ? NZ_CP009273 = 1391494NA (NA)13 (0.580) 8/162 0.9 100% intergenic (+145/‑128) BW25113_RS06980/ynaJ IS5‑like element IS5 family transposase/DUF2534 family protein
?NZ_CP009273 1972747 = 0 (0.000)intergenic (‑293/‑487) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
* ? NZ_CP009273 = 19727510 (0.000)30 (1.320) 18/164 0.2 100% intergenic (‑297/‑483) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
?NZ_CP009273 = 2283592 NA (NA)intergenic (‑68/‑387) BW25113_RS11435/narP IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP
* ? NZ_CP009273 4532499 =2 (0.090)12 (0.600) 12/146 0.4 69.0% intergenic (+49/‑433) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
?NZ_CP009273 4532813 = 9 (0.450)intergenic (+363/‑119) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
* ? NZ_CP009273 = 45325072 (0.090)10 (0.500) 5/146 1.2 65.0% intergenic (+57/‑425) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
?NZ_CP009273 = 4532803 9 (0.450)intergenic (+353/‑129) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA