breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 49,765 C→T intergenic (+134/‑58) kefC → / → folA glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase
RA 49,898 G→A A26T (GCC→ACC)  folA → type 3 dihydrofolate reductase
RA 49,912 G→T W30C (TGG→TGT)  folA → type 3 dihydrofolate reductase
MC JC 2,399,465 Δ7 bp coding (650‑656/939 nt) lrhA ← transcriptional regulator LrhA

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 153580 153705 126 2 [1] [1] 2 yadN/folK fimbrial protein/2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine diphosphokinase
* * ÷ NZ_CP009273 233698 233752 55 2 [0] [1] 2 BW25113_RS01085/BW25113_RS01090 tRNA‑Asp/lipoprotein
* * ÷ NZ_CP009273 235060 235120 61 2 [1] [1] 2 BW25113_RS01095 hypothetical protein
* * ÷ NZ_CP009273 243055 243137 83 2 [1] [1] 2 dinJ/yafL type II toxin‑antitoxin system antitoxin DinJ/C40 family peptidase
* * ÷ NZ_CP009273 248607 248635 29 3 [0] [1] 2 yafN type I toxin‑antitoxin system antitoxin YafN
* * ÷ NZ_CP009273 249210 249228 19 2 [1] [1] 3 yafP GNAT family N‑acetyltransferase
* * ÷ NZ_CP009273 255899 255909 11 3 [0] [1] 2 phoE/proB phosphoporin PhoE/glutamate 5‑kinase
* * ÷ NZ_CP009273 286062 286069 8 2 [1] [0] 2 argL putative translational regulatory protein ArgL
* * ÷ NZ_CP009273 307216 307281 66 3 [1] [1] 2 ecpR/BW25113_RS01515 ECP biosynthesis operon DNA‑binding transcriptional regulator EcpR/hypothetical protein
* * ÷ NZ_CP009273 356938 357569 632 2 [1] [1] 2 [lacA] [lacA]
* * ÷ NZ_CP009273 385303 385371 69 2 [1] [1] 2 hemB/BW25113_RS01915 porphobilinogen synthase/outer membrane autotransporter barrel domain‑containing protein
* * ÷ NZ_CP009273 396614 396636 23 2 [1] [0] 2 BW25113_RS25915 hypothetical protein
* * ÷ NZ_CP009273 518463 518588 126 2 [1] [0] 2 ybbP/rhsD ABC transporter permease/rhs element protein RhsD
* * ÷ NZ_CP009273 518679 518685 7 2 [0] [0] 2 ybbP/rhsD ABC transporter permease/rhs element protein RhsD
* * ÷ NZ_CP009273 559305 559325 21 2 [0] [1] 3 fimZ fimbria biosynthesis transcriptional regulator FimZ
* * ÷ NZ_CP009273 564192 564327 136 2 [1] [1] 3 [BW25113_RS25485] [BW25113_RS25485]
* * ÷ NZ_CP009273 575447 575479 33 2 [1] [1] 2 BW25113_RS02885 hypothetical protein
* * ÷ NZ_CP009273 578916 579100 185 3 [1] [1] 2 BW25113_RS26085/appY tail fiber assembly protein/DNA‑binding transcriptional activator AppY
* * ÷ NZ_CP009273 579268 579279 12 2 [1] [0] 2 appY DNA‑binding transcriptional activator AppY
* * ÷ NZ_CP009273 579991 580011 21 5 [1] [1] 2 appY/ompT DNA‑binding transcriptional activator AppY/omptin family outer membrane protease OmpT
* * ÷ NZ_CP009273 581086 581175 90 2 [1] [1] 3 [ompT] [ompT]
* * ÷ NZ_CP009273 589661 589722 62 2 [0] [1] 2 cusS Cu(+)/Ag(+) sensor histidine kinase CusS
* * ÷ NZ_CP009273 613493 613587 95 4 [0] [1] 2 [entF] [entF]
* * ÷ NZ_CP009273 618047 618066 20 2 [1] [1] 2 entS enterobactin transporter EntS
* * ÷ NZ_CP009273 630541 630559 19 2 [1] [1] 3 ybdM ParB/RepB/Spo0J family partition protein
* * ÷ NZ_CP009273 632918 632995 78 2 [1] [0] 2 ybdO LysR family transcriptional regulator
* * ÷ NZ_CP009273 647488 647628 141 2 [1] [1] 2 citC/dpiB [citrate (pro‑3S)‑lyase] ligase/sensor histidine kinase DpiB
* * ÷ NZ_CP009273 651448 651518 71 2 [1] [0] 3 dcuC/pagP anaerobic C4‑dicarboxylate transporter DcuC/lipid IV(A) palmitoyltransferase PagP
* * ÷ NZ_CP009273 652899 652917 19 2 [0] [0] 2 cspE transcription antiterminator/RNA stability regulator CspE
* * ÷ NZ_CP009273 671934 671937 4 2 [0] [0] 2 ybeQ SEL1‑like repeat protein
* * ÷ NZ_CP009273 678403 678416 14 3 [1] [0] 2 hscC molecular chaperone HscC
* * ÷ NZ_CP009273 694627 694638 12 3 [1] [1] 3 [asnB] [asnB]
* * ÷ NZ_CP009273 703549 703618 70 2 [1] [1] 3 glnS/chiP glutamine‑‑tRNA ligase/chitoporin
* * ÷ NZ_CP009273 704298 704360 63 2 [1] [1] 2 chiP chitoporin
* * ÷ NZ_CP009273 711393 711405 13 2 [1] [1] 2 [BW25113_RS03565] [BW25113_RS03565]
* * ÷ NZ_CP009273 712100 712138 39 3 [0] [1] 2 BW25113_RS03565/BW25113_RS03570 DUF2625 domain‑containing protein/winged helix‑turn‑helix domain‑containing protein
* * ÷ NZ_CP009273 716446 716481 36 2 [0] [0] 2 BW25113_RS26090/kdpE leader peptide SpeFL/two‑component system response regulator KdpE
* * ÷ NZ_CP009273 724390 724406 17 2 [1] [0] 2 kdpF/ybfA K(+)‑transporting ATPase subunit F/YbfA family protein
* * ÷ NZ_CP009273 729528 729583 56 2 [0] [1] 2 [BW25113_RS03630] [BW25113_RS03630]
* * ÷ NZ_CP009273 731648 731733 86 2 [1] [1] 2 [BW25113_RS03640] [BW25113_RS03640]
* * ÷ NZ_CP009273 732128 732158 31 4 [1] [1] 2 [ybfQ] [ybfQ]
* * ÷ NZ_CP009273 733481 733523 43 2 [1] [1] 2 BW25113_RS03650/ybfD ISAs1 family transposase/ISAs1 family transposase
* * ÷ NZ_CP009273 743379 743412 34 4 [1] [1] 3 ybgO fimbrial protein
* * ÷ NZ_CP009273 747618 747685 68 5 [1] [1] 2 [ybgQ]–[ybgD] [ybgQ],[ybgD]
* * ÷ NZ_CP009273 748336 748415 80 3 [1] [1] 2 ybgD/gltA fimbrial protein/citrate synthase
* * ÷ NZ_CP009273 757414 757488 75 2 [1] [1] 2 odhB 2‑oxoglutarate dehydrogenase complex dihydrolipoyllysine‑residue succinyltransferase
* * ÷ NZ_CP009273 766529 766573 45 2 [1] [1] 2 mngB/cydA mannosylglycerate hydrolase/cytochrome ubiquinol oxidase subunit I
* * ÷ NZ_CP009273 769944 770044 101 2 [1] [1] 2 ybgE cyd operon protein YbgE
* * ÷ NZ_CP009273 772599 772615 17 2 [1] [1] 2 tolA cell envelope integrity protein TolA
* * ÷ NZ_CP009273 777680 777680 1 4 [0] [0] 2 nadA quinolinate synthase NadA
* * ÷ NZ_CP009273 799825 799905 81 2 [1] [0] 2 ybhJ hydratase
* * ÷ NZ_CP009273 806069 806134 66 3 [1] [1] 3 bioF 8‑amino‑7‑oxononanoate synthase
* * ÷ NZ_CP009273 823190 823225 36 2 [0] [1] 2 ybhF ATP‑binding cassette domain‑containing protein
* * ÷ NZ_CP009273 823318 823327 10 2 [0] [0] 2 ybhF ATP‑binding cassette domain‑containing protein
* * ÷ NZ_CP009273 841924 841945 22 2 [1] [0] 2 glnP glutamine ABC transporter permease GlnP
* * ÷ NZ_CP009273 869145 869170 26 4 [1] [1] 2 pdeI EAL domain‑containing protein
* * ÷ NZ_CP009273 909291 909301 11 2 [0] [1] 2 hcp/lysO hydroxylamine reductase/L‑lysine exporter LysO
* * ÷ NZ_CP009273 916379 916400 22 2 [1] [1] 2 macB macrolide ABC transporter ATP‑binding protein/permease MacB
* * ÷ NZ_CP009273 917530 917536 7 7 [0] [1] 2 macB macrolide ABC transporter ATP‑binding protein/permease MacB
* * ÷ NZ_CP009273 919295 919308 14 2 [1] [1] 2 clpA ATP‑dependent Clp protease ATP‑binding subunit ClpA
* * ÷ NZ_CP009273 950137 950149 13 2 [0] [1] 2 focA/ycaO formate transporter FocA/30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
* * ÷ NZ_CP009273 952170 952172 3 3 [0] [0] 2 ycaO/ycaP 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO/DUF421 domain‑containing protein
* * ÷ NZ_CP009273 976218 976351 134 2 [1] [1] 2 [mukB] [mukB]
* * ÷ NZ_CP009273 977563 977645 83 3 [1] [0] 2 ldtD L,D‑transpeptidase
* * ÷ NZ_CP009273 982428 982457 30 2 [1] [1] 2 [ompF] [ompF]
* * ÷ NZ_CP009273 982601 982611 11 2 [0] [0] 2 ompF/asnS porin OmpF/asparagine‑‑tRNA ligase
* * ÷ NZ_CP009273 982708 982820 113 2 [0] [1] 3 ompF/asnS porin OmpF/asparagine‑‑tRNA ligase
* * ÷ NZ_CP009273 989340 989367 28 2 [1] [1] 2 ssuB aliphatic sulfonates ABC transporter ATP‑binding protein
* * ÷ NZ_CP009273 993053 993230 178 2 [1] [1] 2 ssuE/elfA NADPH‑dependent FMN reductase/fimbrial protein
* * ÷ NZ_CP009273 1013898 1013923 26 2 [1] [1] 2 ycbZ/matP Lon protease family protein/macrodomain Ter protein MatP
* * ÷ NZ_CP009273 1031171 1031187 17 2 [0] [1] 2 hyaC Ni/Fe‑hydrogenase b‑type cytochrome subunit
* * ÷ NZ_CP009273 1051205 1051220 16 2 [1] [1] 2 torS TMAO reductase system sensor histidine kinase/response regulator TorS
* * ÷ NZ_CP009273 1051693 1051719 27 4 [1] [0] 2 [torT] [torT]
* * ÷ NZ_CP009273 1058544 1058561 18 3 [1] [1] 2 cbpA curved DNA‑binding protein
* * ÷ NZ_CP009273 1060811 1060865 55 2 [1] [1] 3 yccE/agp YccE family protein/bifunctional glucose‑1‑phosphatase/inositol phosphatase
* * ÷ NZ_CP009273 1069557 1069615 59 2 [1] [1] 2 rutA/rutR pyrimidine utilization protein A/HTH‑type transcriptional regulator RutR
* * ÷ NZ_CP009273 1073489 1073574 86 2 [1] [1] 2 putA trifunctional transcriptional regulator/proline dehydrogenase/L‑glutamate gamma‑semialdehyde dehydrogenase
* * ÷ NZ_CP009273 1074489 1074518 30 2 [0] [1] 2 BW25113_RS05280 hypothetical protein
* * ÷ NZ_CP009273 1087970 1088023 54 2 [1] [1] 3 pgaA/dgcT poly‑beta‑1,6 N‑acetyl‑D‑glucosamine export porin PgaA/GGDEF domain‑containing protein
* * ÷ NZ_CP009273 1088354 1088364 11 3 [0] [1] 3 dgcT GGDEF domain‑containing protein
* * ÷ NZ_CP009273 1091362 1091445 84 2 [0] [1] 3 BW25113_RS05360 hypothetical protein
* * ÷ NZ_CP009273 1097667 1097680 14 3 [1] [1] 2 csgE curli production assembly/transport protein CsgE
* * ÷ NZ_CP009273 1098738 1098925 188 2 [1] [1] 3 csgD/csgB biofilm master transcriptional regulator CsgD/curli minor subunit CsgB
* * ÷ NZ_CP009273 1105867 1105924 58 3 [1] [1] 2 mdoG glucans biosynthesis protein MdoG
* * ÷ NZ_CP009273 1114039 1114049 11 5 [1] [0] 3 yceJ cytochrome b
* * ÷ NZ_CP009273 1143343 1143364 22 2 [1] [1] 2 plsX phosphate acyltransferase PlsX
* * ÷ NZ_CP009273 1144428 1144463 36 2 [1] [1] 2 fabH beta‑ketoacyl‑ACP synthase III
* * ÷ NZ_CP009273 1144610 1144714 105 2 [1] [1] 2 fabH beta‑ketoacyl‑ACP synthase III
* * ÷ NZ_CP009273 1145210 1145215 6 2 [0] [1] 2 fabD ACP S‑malonyltransferase
* * ÷ NZ_CP009273 1145304 1145339 36 2 [1] [0] 2 fabD ACP S‑malonyltransferase
* * ÷ NZ_CP009273 1145393 1145411 19 2 [0] [1] 2 fabD ACP S‑malonyltransferase
* * ÷ NZ_CP009273 1146029 1146127 99 2 [1] [1] 2 [fabD]–[fabG] [fabD],[fabG]
* * ÷ NZ_CP009273 1151568 1151585 18 2 [0] [1] 2 holB DNA polymerase III subunit delta'
* * ÷ NZ_CP009273 1153954 1154000 47 3 [1] [1] 4 ptsG PTS glucose transporter subunit IIBC
* * ÷ NZ_CP009273 1158175 1158251 77 3 [1] [1] 2 lpoB penicillin‑binding protein activator LpoB
* * ÷ NZ_CP009273 1161521 1161567 47 2 [1] [1] 2 [ndh] [ndh]
* * ÷ NZ_CP009273 1162489 1162593 105 2 [1] [1] 2 ndh NADH‑quinone dehydrogenase
* * ÷ NZ_CP009273 1163999 1164048 50 2 [1] [1] 3 comR TetR family copper‑responsive transcriptional repressor ComR
* * ÷ NZ_CP009273 1166297 1166355 59 2 [1] [1] 3 mfd transcription‑repair coupling factor
* * ÷ NZ_CP009273 1172808 1172924 117 3 [1] [1] 2 lolE lipoprotein‑releasing ABC transporter permease subunit LolE
* * ÷ NZ_CP009273 1186767 1186792 26 2 [0] [1] 2 purB adenylosuccinate lyase
* * ÷ NZ_CP009273 1192438 1192508 71 2 [0] [1] 2 ymfD class I SAM‑dependent methyltransferase
* * ÷ NZ_CP009273 1192736 1192774 39 2 [1] [0] 2 ymfD class I SAM‑dependent methyltransferase
* * ÷ NZ_CP009273 1192937 1192975 39 3 [1] [0] 2 ymfD class I SAM‑dependent methyltransferase
* * ÷ NZ_CP009273 1193852 1193878 27 2 [1] [1] 2 BW25113_RS05920/lit hypothetical protein/cell death peptidase Lit
* * ÷ NZ_CP009273 1205845 1205890 46 3 [1] [1] 2 mcrA 5‑methylcytosine‑specific endonuclease McrA
* * ÷ NZ_CP009273 1206499 1206541 43 2 [0] [1] 5 mcrA 5‑methylcytosine‑specific endonuclease McrA
* * ÷ NZ_CP009273 1206632 1206663 32 2 [0] [0] 2 [mcrA] [mcrA]
* * ÷ NZ_CP009273 1206769 1206785 17 2 [1] [1] 2 mcrA/BW25113_RS23640 5‑methylcytosine‑specific endonuclease McrA/isocitrate/isopropylmalate family dehydrogenase
* * ÷ NZ_CP009273 1207276 1207302 27 2 [1] [0] 2 iraM anti‑adapter protein IraM
* * ÷ NZ_CP009273 1207480 1207568 89 3 [1] [1] 2 iraM/BW25113_RS25985 anti‑adapter protein IraM/protein YmgK
* * ÷ NZ_CP009273 1207629 1207741 113 2 [1] [1] 2 [BW25113_RS25985] [BW25113_RS25985]
* * ÷ NZ_CP009273 1208139 1208204 66 2 [1] [1] 2 [ycgX] [ycgX]
* * ÷ NZ_CP009273 1209576 1209676 101 6 [1] [1] 2 bluR/bluF DNA‑binding transcriptional repressor BluR/blue light‑responsive regulator BluF
* * ÷ NZ_CP009273 1211123 1211207 85 2 [1] [1] 2 bluF/ycgZ blue light‑responsive regulator BluF/regulatory protein YcgZ
* * ÷ NZ_CP009273 1212115 1212168 54 2 [1] [1] 2 ariR/BW25113_RS06060 biofilm/acid‑resistance regulator AriR/hypothetical protein
* * ÷ NZ_CP009273 1218666 1218708 43 2 [1] [1] 2 BW25113_RS06100/BW25113_RS23645 hypothetical protein/hypothetical protein
* * ÷ NZ_CP009273 1222278 1222310 33 2 [1] [1] 2 ycgJ YcgJ family protein
* * ÷ NZ_CP009273 1225865 1226004 140 2 [1] [1] 2 hlyE/umuD hemolysin HlyE/translesion error‑prone DNA polymerase V autoproteolytic subunit
* * ÷ NZ_CP009273 1228657 1228662 6 2 [0] [0] 2 nhaB Na(+)/H(+) antiporter NhaB
* * ÷ NZ_CP009273 1236181 1236210 30 2 [0] [1] 2 cvrA potassium/proton antiporter
* * ÷ NZ_CP009273 1251567 1251626 60 2 [0] [1] 3 ycgV/ychF autotransporter outer membrane beta‑barrel domain‑containing protein/redox‑regulated ATPase YchF
* * ÷ NZ_CP009273 1251703 1251733 31 3 [1] [1] 3 ycgV/ychF autotransporter outer membrane beta‑barrel domain‑containing protein/redox‑regulated ATPase YchF
* * ÷ NZ_CP009273 1260079 1260087 9 2 [1] [1] 2 hemA glutamyl‑tRNA reductase
* * ÷ NZ_CP009273 1268043 1268166 124 2 [0] [1] 2 chaC glutathione‑specific gamma‑glutamylcyclotransferase
* * ÷ NZ_CP009273 1272213 1272246 34 2 [1] [1] 2 narX nitrate/nitrite two‑component system sensor histidine kinase NarX
* * ÷ NZ_CP009273 1274563 1274642 80 3 [1] [1] 2 narK nitrate transporter NarK
* * ÷ NZ_CP009273 1277495 1277518 24 2 [0] [1] 3 narG nitrate reductase subunit alpha
* * ÷ NZ_CP009273 1282540 1282589 50 2 [0] [1] 2 BW25113_RS23095 RtT sRNA
* * ÷ NZ_CP009273 1285628 1285661 34 2 [1] [1] 2 rssA/rssB patatin‑like phospholipase RssA/two‑component system response regulator RssB
* * ÷ NZ_CP009273 1286073 1286132 60 2 [1] [1] 2 rssB two‑component system response regulator RssB
* * ÷ NZ_CP009273 1287923 1287972 50 2 [1] [1] 3 [hns] [hns]
* * ÷ NZ_CP009273 1288441 1288460 20 2 [1] [1] 2 hns/tdk DNA‑binding transcriptional regulator H‑NS/thymidine kinase
* * ÷ NZ_CP009273 1293704 1293742 39 3 [0] [1] 2 adhE/ychE bifunctional acetaldehyde‑CoA/alcohol dehydrogenase/protein YchT
* * ÷ NZ_CP009273 1293951 1294073 123 3 [1] [1] 2 ychE–[ychE] ychE,[ychE]
* * ÷ NZ_CP009273 1294795 1294860 66 2 [1] [0] 2 [BW25113_RS25865] [BW25113_RS25865]
* * ÷ NZ_CP009273 1297490 1297498 9 2 [0] [0] 2 oppB oligopeptide ABC transporter permease OppB
* * ÷ NZ_CP009273 1303335 1303345 11 2 [0] [1] 3 kch voltage‑gated potassium channel protein
* * ÷ NZ_CP009273 1304683 1304703 21 2 [1] [0] 2 kch/yciI voltage‑gated potassium channel protein/YciI family protein
* * ÷ NZ_CP009273 1308167 1308212 46 2 [1] [1] 3 BW25113_RS25555/ompW YkgJ family cysteine cluster protein/outer membrane protein OmpW
* * ÷ NZ_CP009273 1309465 1309541 77 3 [1] [1] 2 [yciE]–[yciF] [yciE],[yciF]
* * ÷ NZ_CP009273 1313731 1313817 87 2 [1] [1] 4 trpCF bifunctional indole‑3‑glycerol‑phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF
* * ÷ NZ_CP009273 1314877 1314956 80 2 [0] [1] 3 trpD bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD
* * ÷ NZ_CP009273 1317136 1317161 26 2 [1] [1] 2 trpE anthranilate synthase component I
* * ÷ NZ_CP009273 1319179 1319229 51 2 [1] [1] 2 yciQ DUF2207 domain‑containing protein
* * ÷ NZ_CP009273 1320850 1320950 101 2 [1] [1] 3 [yciQ] [yciQ]
* * ÷ NZ_CP009273 1329154 1329195 42 2 [0] [1] 2 cysB/ymiA HTH‑type transcriptional regulator CysB/YmiA family putative membrane protein
* * ÷ NZ_CP009273 1331624 1331681 58 2 [1] [1] 3 acnA aconitate hydratase AcnA
* * ÷ NZ_CP009273 1333610 1333637 28 2 [1] [1] 2 pgpB phosphatidylglycerophosphatase B
* * ÷ NZ_CP009273 1336038 1336048 11 2 [0] [1] 3 lapB/pyrF lipopolysaccharide assembly protein LapB/orotidine‑5'‑phosphate decarboxylase
* * ÷ NZ_CP009273 1338812 1338944 133 3 [1] [1] 2 [BW25113_RS06720]–[ymiD] [BW25113_RS06720],[ymiD]
* * ÷ NZ_CP009273 1342050 1342101 52 2 [1] [1] 2 rnb exoribonuclease II
* * ÷ NZ_CP009273 1345887 1345975 89 2 [1] [1] 2 ycjD DUF559 domain‑containing protein
* * ÷ NZ_CP009273 1346796 1346879 84 2 [1] [1] 2 sapF peptide ABC transporter ATP‑binding protein SapF
* * ÷ NZ_CP009273 1358693 1358706 14 2 [0] [1] 2 puuB gamma‑glutamylputrescine oxidase
* * ÷ NZ_CP009273 1362792 1362817 26 2 [1] [0] 2 pspA phage shock protein PspA
* * ÷ NZ_CP009273 1370611 1370678 68 2 [1] [1] 2 ycjR sugar phosphate isomerase/epimerase
* * ÷ NZ_CP009273 1372447 1372506 60 2 [0] [1] 3 ycjT kojibiose phosphorylase
* * ÷ NZ_CP009273 1379602 1379634 33 2 [0] [1] 2 ycjX YcjX family protein
* * ÷ NZ_CP009273 1380650 1380662 13 2 [1] [1] 2 ycjF YcjF family protein
* * ÷ NZ_CP009273 1386205 1386247 43 3 [1] [1] 2 ycjY/pgrR alpha/beta hydrolase/DNA‑binding transcriptional regulator PgrR
* * ÷ NZ_CP009273 1393189 1393238 50 2 [1] [1] 2 fnr fumarate/nitrate reduction transcriptional regulator Fnr
* * ÷ NZ_CP009273 1393838 1393905 68 3 [1] [1] 2 fnr/ogt fumarate/nitrate reduction transcriptional regulator Fnr/methylated‑DNA‑‑[protein]‑cysteine S‑methyltransferase
* * ÷ NZ_CP009273 1408217 1408229 13 3 [1] [0] 2 ralR/recT type I toxin‑antitoxin system endodeoxyribonuclease toxin RalR/recombination protein RecT
* * ÷ NZ_CP009273 1423965 1424020 56 2 [1] [0] 3 stfR prophage tail fiber N‑terminal domain‑containing protein
* * ÷ NZ_CP009273 1429968 1429992 25 2 [1] [1] 2 uspF/ompN universal stress protein UspF/porin OmpN
* * ÷ NZ_CP009273 1453627 1453683 57 2 [1] [1] 2 paaC 3‑hydroxyacyl‑CoA dehydrogenase PaaC
* * ÷ NZ_CP009273 1459340 1459529 190 3 [1] [1] 2 BW25113_RS25580 BW25113_RS25580
* * ÷ NZ_CP009273 1521751 1521775 25 2 [1] [1] 2 yncH/BW25113_RS07645 YncH family protein/RHS repeat protein
* * ÷ NZ_CP009273 1524290 1524380 91 2 [0] [1] 3 BW25113_RS07645/BW25113_RS26145 RHS repeat protein/hypothetical protein
* * ÷ NZ_CP009273 1524532 1524595 64 2 [0] [1] 2 BW25113_RS26145 hypothetical protein
* * ÷ NZ_CP009273 1539072 1539150 79 2 [1] [1] 2 BW25113_RS07710 leucine‑rich repeat domain‑containing protein
* * ÷ NZ_CP009273 1540363 1540420 58 2 [1] [1] 2 yddL/yddG porin/aromatic amino acid efflux DMT transporter YddG
* * ÷ NZ_CP009273 1577979 1578024 46 2 [1] [1] 2 [safA] [safA]
* * ÷ NZ_CP009273 1631925 1632010 86 3 [1] [1] 2 gnsB addiction module toxin, GnsA/GnsB family
* * ÷ NZ_CP009273 1635236 1635285 50 3 [1] [1] 5 ynfU/cspB putative zinc‑binding protein YnfU/cold shock‑like protein CspB
* * ÷ NZ_CP009273 1641055 1641066 12 4 [0] [0] 2 flxA/BW25113_RS23105 FlxA‑like family protein/hypothetical protein
* * ÷ NZ_CP009273 1687115 1687151 37 3 [1] [1] 3 [uidB] [uidB]
* * ÷ NZ_CP009273 1719978 1720024 47 2 [1] [1] 2 ydhL DUF1289 domain‑containing protein
* * ÷ NZ_CP009273 1748936 1749096 161 3 [1] [1] 2 ydhY/fumD ferredoxin‑like protein/fumarate hydratase FumD
* * ÷ NZ_CP009273 1781498 1781508 11 2 [0] [0] 2 ppsA/ppsR phosphoenolpyruvate synthase/posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR
* * ÷ NZ_CP009273 1807534 1807564 31 3 [1] [0] 2 BW25113_RS09050/cedA hypothetical protein/cell division activator CedA
* * ÷ NZ_CP009273 1815582 1815596 15 2 [1] [0] 2 chbB PTS N,N'‑diacetylchitobiose transporter subunit IIB
* * ÷ NZ_CP009273 1899568 1899711 144 2 [1] [1] 2 yobD/mntP DUF986 family protein/manganese efflux pump MntP
* * ÷ NZ_CP009273 1940370 1940494 125 2 [1] [1] 2 yobI yobI
* * ÷ NZ_CP009273 1952557 1952609 53 3 [1] [1] 2 torY/cutC NapC/NirT family cytochrome c/copper homeostasis protein CutC
* * ÷ NZ_CP009273 1972752 1972755 4 16 [0] [1] 2 flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
* * ÷ NZ_CP009273 1980045 1980076 32 3 [1] [1] 2 araF/ftnB arabinose ABC transporter substrate‑binding protein AraF/non‑heme ferritin‑like protein
* * ÷ NZ_CP009273 1985362 1985379 18 2 [0] [0] 2 BW25113_RS09990 tRNA‑Leu
* * ÷ NZ_CP009273 1989102 1989165 64 2 [1] [1] 3 [BW25113_RS25650] [BW25113_RS25650]
* * ÷ NZ_CP009273 2016530 2016540 11 5 [1] [0] 2 fliR flagellar biosynthetic protein FliR
* * ÷ NZ_CP009273 2034678 2034724 47 2 [1] [1] 2 msrQ/zinT protein‑methionine‑sulfoxide reductase heme‑binding subunit MsrQ/metal‑binding protein ZinT
* * ÷ NZ_CP009273 2035746 2035814 69 3 [1] [0] 2 zinT/yodB metal‑binding protein ZinT/cytochrome b
* * ÷ NZ_CP009273 2051143 2051176 34 2 [1] [1] 4 yeeN/BW25113_RS10360 YebC/PmpR family DNA‑binding transcriptional regulator/tRNA‑Asn
* * ÷ NZ_CP009273 2051305 2051351 47 3 [1] [0] 2 yeeN/BW25113_RS10360 YebC/PmpR family DNA‑binding transcriptional regulator/tRNA‑Asn
* * ÷ NZ_CP009273 2055391 2055402 12 2 [0] [1] 2 nac nitrogen assimilation transcriptional regulator NAC
* * ÷ NZ_CP009273 2061995 2062120 126 2 [1] [1] 2 [BW25113_RS24005] [BW25113_RS24005]
* * ÷ NZ_CP009273 2097568 2097568 1 2 [0] [0] 2 wbbK glycosyltransferase family 1 protein
* * ÷ NZ_CP009273 2176845 2176866 22 2 [0] [1] 2 yegX glycoside hydrolase family 25 protein
* * ÷ NZ_CP009273 2185879 2185918 40 2 [1] [0] 3 yehD/yehE fimbrial protein/YehE family protein
* * ÷ NZ_CP009273 2198658 2198675 18 7 [1] [0] 2 yehL MoxR family ATPase
* * ÷ NZ_CP009273 2211826 2211855 30 2 [1] [1] 2 yehY glycine betaine ABC transporter permease YehY
* * ÷ NZ_CP009273 2235487 2235497 11 2 [0] [0] 2 yeiB DUF418 family protein
* * ÷ NZ_CP009273 2286521 2286535 15 2 [1] [1] 3 ccmF cytochrome c‑type biogenesis heme lyase CcmF
* * ÷ NZ_CP009273 2297120 2297289 170 2 [1] [1] 2 [BW25113_RS25870] [BW25113_RS25870]
* * ÷ NZ_CP009273 2300752 2300781 30 3 [1] [1] 2 yojI microcin J25 efflux ABC transporter YojI
* * ÷ NZ_CP009273 2376875 2376955 81 3 [1] [1] 2 elaD deubiquitinase ElaD
* * ÷ NZ_CP009273 2379274 2379292 19 2 [0] [1] 2 yfbK/yfbL VWA domain‑containing protein/M28 family metallopeptidase
* * ÷ NZ_CP009273 2381936 2381944 9 2 [1] [0] 4 BW25113_RS11875/BW25113_RS11880 hypothetical protein/hypothetical protein
* * ÷ NZ_CP009273 2382014 2382024 11 2 [0] [1] 2 BW25113_RS11875/BW25113_RS11880 hypothetical protein/hypothetical protein
* * ÷ NZ_CP009273 2410461 2410472 12 2 [1] [0] 3 pta/yfcC phosphate acetyltransferase/putative basic amino acid antiporter YfcC
* * ÷ NZ_CP009273 2421806 2421821 16 2 [1] [1] 9 ubiX flavin prenyltransferase UbiX
* * ÷ NZ_CP009273 2429503 2429521 19 5 [1] [1] 2 usg aspartate‑semialdehyde dehydrogenase
* * ÷ NZ_CP009273 2462742 2462845 104 2 [1] [1] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2463145 2463190 46 2 [1] [1] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2463705 2463874 170 2 [1] [1] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2474920 2474936 17 2 [1] [0] 2 emrY multidrug efflux MFS transporter permease subunit EmrY
* * ÷ NZ_CP009273 2487089 2487109 21 2 [1] [1] 2 frc/yfdX formyl‑CoA transferase/YfdX family protein
* * ÷ NZ_CP009273 2505189 2505285 97 5 [1] [1] 2 mntH Nramp family divalent metal transporter
* * ÷ NZ_CP009273 2505516 2505534 19 2 [0] [1] 3 mntH Nramp family divalent metal transporter
* * ÷ NZ_CP009273 2563799 2563838 40 2 [0] [0] 2 eutE aldehyde dehydrogenase EutE
* * ÷ NZ_CP009273 2569312 2569336 25 3 [1] [1] 2 eutS/maeB ethanolamine utilization microcompartment protein EutS/NADP‑dependent oxaloacetate‑decarboxylating malate dehydrogenase
* * ÷ NZ_CP009273 2622990 2623027 38 2 [0] [0] 2 yfgG/yfgH YfgG family protein/glycine zipper 2TM domain‑containing protein
* * ÷ NZ_CP009273 2642741 2642753 13 2 [1] [0] 2 yfhM alpha2‑macroglobulin
* * ÷ NZ_CP009273 2646906 2647014 109 2 [0] [0] 2 sseA/timP 3‑mercaptopyruvate sulfurtransferase/small toxic inner membrane protein TimP
* * ÷ NZ_CP009273 2687142 2687170 29 2 [1] [1] 2 purL phosphoribosylformylglycinamidine synthase
* * ÷ NZ_CP009273 2766386 2766428 43 2 [1] [1] 6 BW25113_RS13765 arsenic transporter
* * ÷ NZ_CP009273 2767798 2767808 11 2 [0] [1] 3 BW25113_RS13770 hypothetical protein
* * ÷ NZ_CP009273 2779649 2779670 22 3 [1] [1] 3 BW25113_RS13825/BW25113_RS26005 tRNA‑Ile/alpha‑amylase family glycosyl hydrolase
* * ÷ NZ_CP009273 2877647 2877788 142 3 [1] [1] 2 casA/cas3 type I‑E CRISPR‑associated protein Cse1/CasA/CRISPR‑associated helicase/endonuclease Cas3
* * ÷ NZ_CP009273 2892773 2892776 4 2 [0] [1] 3 ygcU FAD‑binding oxidoreductase
* * ÷ NZ_CP009273 2897898 2897914 17 2 [1] [0] 7 ygcE/queE FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE
* * ÷ NZ_CP009273 2898967 2899003 37 2 [1] [0] 2 BW25113_RS14445 hypothetical protein
* * ÷ NZ_CP009273 2984439 2984480 42 2 [0] [1] 3 BW25113_RS14825/ygeG hypothetical protein/tetratricopeptide repeat protein
* * ÷ NZ_CP009273 2985259 2985260 2 2 [0] [0] 3 ygeG/ygeH tetratricopeptide repeat protein/HilA family transcriptional regulator YgeH
* * ÷ NZ_CP009273 2988545 2988653 109 2 [1] [1] 3 BW25113_RS14850/BW25113_RS26010 response regulator transcription factor/hypothetical protein
* * ÷ NZ_CP009273 3176923 3177001 79 3 [1] [1] 2 BW25113_RS25885/ribB hypothetical protein/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
* * ÷ NZ_CP009273 3178648 3178715 68 2 [1] [0] 2 ubiK/ygiL ubiquinone biosynthesis accessory factor UbiK/fimbrial‑like protein
* * ÷ NZ_CP009273 3179375 3180717–3179454 80–1343 3 [1] [1] 3 BW25113_RS15805–[BW25113_RS15805] BW25113_RS15805,[BW25113_RS15805]
* * ÷ NZ_CP009273 3221067 3221087 21 2 [0] [1] 2 ygjI/ygjJ amino acid permease/protein YgjJ
* * ÷ NZ_CP009273 3246086 3246156 71 2 [1] [0] 2 yhaH/yhaI DUF805 domain‑containing protein/DUF805 domain‑containing protein
* * ÷ NZ_CP009273 3247167 3247188 22 3 [1] [0] 3 yhaJ DNA‑binding transcriptional regulator YhaJ
* * ÷ NZ_CP009273 3260795 3260821 27 2 [1] [1] 2 tdcR transcriptional activator TdcR
* * ÷ NZ_CP009273 3262280 3262356 77 3 [1] [1] 2 yhaC YhaC family protein
* * ÷ NZ_CP009273 3277460 3277509 50 2 [1] [0] 2 kbaY/agaB tagatose‑bisphosphate aldolase subunit KbaY/PTS galactosamine transporter subunit IIB
* * ÷ NZ_CP009273 3315055 3315066 12 3 [1] [1] 2 yhbX/BW25113_RS16455 phosphoethanolamine transferase/tRNA‑Leu
* * ÷ NZ_CP009273 3354413 3354420 8 2 [0] [0] 2 gltD/gltF glutamate synthase subunit GltD/DUF1120 domain‑containing protein
* * ÷ NZ_CP009273 3354471 3354532 62 2 [0] [1] 3 gltD/gltF glutamate synthase subunit GltD/DUF1120 domain‑containing protein
* * ÷ NZ_CP009273 3378693 3378776 84 2 [1] [0] 3 argR/yhcN transcriptional regulator ArgR/peroxide/acid stress response protein YhcN
* * ÷ NZ_CP009273 3406941 3406972 32 2 [1] [1] 2 acrS/acrE multidrug efflux transporter transcriptional repressor AcrS/multidrug efflux RND transporter periplasmic adaptor subunit AcrE
* * ÷ NZ_CP009273 3428554 3428569 16 4 [0] [1] 2 [rsmB] [rsmB]
* * ÷ NZ_CP009273 3460357 3460416 60 4 [1] [1] 2 bfd/chiA bacterioferritin‑associated ferredoxin/bifunctional chitinase/lysozyme
* * ÷ NZ_CP009273 3463364 3463423 60 2 [1] [1] 3 chiA/tuf bifunctional chitinase/lysozyme/elongation factor Tu
* * ÷ NZ_CP009273 3575397 3575442 46 4 [1] [1] 2 hcp Hcp1 family type VI secretion system effector
* * ÷ NZ_CP009273 3646961 3646991 31 2 [1] [1] 3 [BW25113_RS18165] [BW25113_RS18165]
* * ÷ NZ_CP009273 3751255 3751371 117 6 [0] [1] 3 yiaY/selB L‑threonine dehydrogenase/selenocysteine‑specific translation elongation factor
* * ÷ NZ_CP009273 3763040 3763085 46 2 [1] [0] 2 BW25113_RS26240 Imm57 family immunity protein
* * ÷ NZ_CP009273 3790407 3790457 51 2 [1] [1] 2 waaL O‑antigen ligase
* * ÷ NZ_CP009273 3792557 3792580 24 2 [0] [1] 2 waaU glycosyltransferase family 9 protein
* * ÷ NZ_CP009273 3792664 3792696 33 2 [1] [1] 2 [waaU] [waaU]
* * ÷ NZ_CP009273 3795696 3795713 18 4 [1] [0] 2 waaO lipopolysaccharide 3‑alpha‑galactosyltransferase
* * ÷ NZ_CP009273 3797637 3797654 18 2 [1] [1] 3 rfaS LPS core biosynthesis protein RfaS
* * ÷ NZ_CP009273 3797765 3797784 20 2 [0] [0] 2 rfaS LPS core biosynthesis protein RfaS
* * ÷ NZ_CP009273 3892759 3892792 34 5 [1] [1] 2 [yieL] [yieL]
* * ÷ NZ_CP009273 4225882 4225907 26 2 [1] [1] 2 yjbE exopolysaccharide production protein YjbE
* * ÷ NZ_CP009273 4241586 4241604 19 2 [1] [1] 2 BW25113_RS20970 SopA family protein
* * ÷ NZ_CP009273 4294335 4294379 45 3 [1] [1] 2 ytcA/yjcS YtcA family lipoprotein/alkyl sulfatase YjcS
* * ÷ NZ_CP009273 4427436 4427474 39 2 [1] [0] 2 cysQ/BW25113_RS21900 3'(2'),5'‑bisphosphate nucleotidase CysQ/hypothetical protein
* * ÷ NZ_CP009273 4531470 4531525 56 3 [1] [0] 4 fimB/fimE type 1 fimbria switch DNA invertase FimB/type 1 fimbria switch DNA invertase FimE
* * ÷ NZ_CP009273 4532804 4532812 9 7 [0] [0] 6 fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
* * ÷ NZ_CP009273 4593001 4593065 65 3 [1] [1] 3 yjjP/yjjQ threonine/serine exporter ThrE family protein/response regulator transcription factor
* * ÷ NZ_CP009273 4630714 4630714 1 2 [0] [0] 2 BW25113_RS22930/yjtD hypothetical protein/tRNA/rRNA methyltransferase

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 360104 =NA (NA)13 (1.030) 11/168 0.2 48.1% intergenic (‑35/+251) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
?NZ_CP009273 = 360286 14 (1.100)intergenic (‑217/+69) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
* ? NZ_CP009273 = 19727510 (0.000)16 (1.260) 9/168 0.3 100% intergenic (‑297/‑483) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
?NZ_CP009273 = 2283592 NA (NA)intergenic (‑68/‑387) BW25113_RS11435/narP IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP
* ? NZ_CP009273 4532499 =0 (0.000)5 (0.440) 4/150 0.8 100% intergenic (+49/‑433) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
?NZ_CP009273 4532813 = 0 (0.000)intergenic (+363/‑119) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
* ? NZ_CP009273 = 45325070 (0.000)7 (0.620) 7/150 0.4 100% intergenic (+57/‑425) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
?NZ_CP009273 = 4532803 0 (0.000)intergenic (+353/‑129) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA