breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 49,765 C→T intergenic (+134/‑58) kefC → / → folA glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase
RA 49,898 G→A A26T (GCC→ACC)  folA → type 3 dihydrofolate reductase
RA 49,912 G→T W30C (TGG→TGT)  folA → type 3 dihydrofolate reductase
MC JC 2,399,465 Δ7 bp coding (650‑656/939 nt) lrhA ← transcriptional regulator LrhA

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 33332 33334 3 2 [0] [0] 2 carB carbamoyl‑phosphate synthase large subunit
* * ÷ NZ_CP009273 45098 45138 41 2 [1] [1] 2 fixC FAD‑dependent oxidoreductase
* * ÷ NZ_CP009273 118758 118791 34 2 [1] [1] 2 pdhR pyruvate dehydrogenase complex transcriptional repressor PdhR
* * ÷ NZ_CP009273 153605 153645 41 2 [1] [1] 3 yadN/folK fimbrial protein/2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine diphosphokinase
* * ÷ NZ_CP009273 200693 200711 19 2 [1] [0] 2 lpxB lipid‑A‑disaccharide synthase
* * ÷ NZ_CP009273 255899 255932 34 4 [1] [1] 3 phoE/proB phosphoporin PhoE/glutamate 5‑kinase
* * ÷ NZ_CP009273 279553 279602 50 2 [1] [1] 2 yagF xylonate dehydratase YagF
* * ÷ NZ_CP009273 280856 280966 111 2 [1] [1] 2 [yagF] [yagF]
* * ÷ NZ_CP009273 356979 357574 596 2 [1] [0] 2 [lacA] [lacA]
* * ÷ NZ_CP009273 502777 502779 3 2 [0] [0] 2 ybaP TraB/GumN family protein
* * ÷ NZ_CP009273 528245 528258 14 2 [1] [0] 2 allA ureidoglycolate lyase
* * ÷ NZ_CP009273 578861 578876 16 2 [1] [0] 2 BW25113_RS26085/appY tail fiber assembly protein/DNA‑binding transcriptional activator AppY
* * ÷ NZ_CP009273 578970 579073 104 2 [0] [0] 3 BW25113_RS26085/appY tail fiber assembly protein/DNA‑binding transcriptional activator AppY
* * ÷ NZ_CP009273 585057 585089 33 2 [1] [0] 3 nfrA bacteriophage adsorption protein NfrA
* * ÷ NZ_CP009273 596474 596492 19 3 [1] [1] 3 cusA Cu(+)/Ag(+) efflux RND transporter permease subunit CusA
* * ÷ NZ_CP009273 608342 608352 11 3 [1] [1] 2 fes enterochelin esterase
* * ÷ NZ_CP009273 612260 612287 28 2 [1] [1] 2 entF enterobactin non‑ribosomal peptide synthetase EntF
* * ÷ NZ_CP009273 613425 613551 127 3 [1] [1] 2 [entF] [entF]
* * ÷ NZ_CP009273 633074 633114 41 3 [1] [1] 3 [ybdO] [ybdO]
* * ÷ NZ_CP009273 644102 644112 11 2 [1] [0] 2 citF citrate lyase subunit alpha
* * ÷ NZ_CP009273 647495 647568 74 2 [1] [1] 2 citC/dpiB [citrate (pro‑3S)‑lyase] ligase/sensor histidine kinase DpiB
* * ÷ NZ_CP009273 672223 672329 107 3 [1] [1] 2 ybeR DUF1266 domain‑containing protein
* * ÷ NZ_CP009273 674242 674255 14 2 [1] [1] 2 djlB J domain‑containing protein
* * ÷ NZ_CP009273 674912 674912 1 2 [0] [0] 3 ybeT/ybeU tetratricopeptide repeat protein/DUF1266 domain‑containing protein
* * ÷ NZ_CP009273 677174 677248 75 2 [1] [1] 3 [hscC] [hscC]
* * ÷ NZ_CP009273 701132 701143 12 2 [1] [0] 2 nagE PTS N‑acetyl glucosamine transporter subunit IIABC
* * ÷ NZ_CP009273 701317 701337 21 2 [1] [1] 3 nagE PTS N‑acetyl glucosamine transporter subunit IIABC
* * ÷ NZ_CP009273 744925 744947 23 2 [1] [1] 2 ybgP molecular chaperone
* * ÷ NZ_CP009273 747402 747433 32 2 [1] [0] 2 ybgQ fimbrial biogenesis outer membrane usher protein
* * ÷ NZ_CP009273 748516 748589 74 2 [1] [1] 2 ybgD/gltA fimbrial protein/citrate synthase
* * ÷ NZ_CP009273 751222 751249 28 2 [0] [1] 2 sdhD succinate dehydrogenase membrane anchor subunit
* * ÷ NZ_CP009273 786730 786741 12 2 [1] [1] 3 galE UDP‑glucose 4‑epimerase GalE
* * ÷ NZ_CP009273 805283 805320 38 2 [1] [1] 2 bioB biotin synthase BioB
* * ÷ NZ_CP009273 813222 813243 22 2 [1] [1] 2 moaA GTP 3',8‑cyclase MoaA
* * ÷ NZ_CP009273 813339 813352 14 2 [1] [1] 2 moaA GTP 3',8‑cyclase MoaA
* * ÷ NZ_CP009273 832282 832317 36 3 [1] [1] 4 hcxB hydroxycarboxylate dehydrogenase HcXB
* * ÷ NZ_CP009273 844500 844512 13 3 [1] [0] 2 dps/rhtA DNA starvation/stationary phase protection protein Dps/threonine/homoserine exporter RhtA
* * ÷ NZ_CP009273 860591 860627 37 2 [0] [1] 2 moeA molybdopterin molybdotransferase MoeA
* * ÷ NZ_CP009273 876126 876195 70 3 [1] [1] 2 [dacC] [dacC]
* * ÷ NZ_CP009273 879284 879305 22 2 [1] [1] 5 mdfA multidrug efflux MFS transporter MdfA
* * ÷ NZ_CP009273 896938 896959 22 2 [1] [1] 2 artM arginine ABC transporter permease ArtM
* * ÷ NZ_CP009273 902960 903020 61 2 [0] [1] 2 ybjT SDR family oxidoreductase
* * ÷ NZ_CP009273 903107 903109 3 2 [1] [0] 2 ybjT SDR family oxidoreductase
* * ÷ NZ_CP009273 950054 950089 36 2 [0] [0] 2 focA/ycaO formate transporter FocA/30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
* * ÷ NZ_CP009273 950161 950249 89 2 [0] [1] 3 focA/ycaO formate transporter FocA/30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
* * ÷ NZ_CP009273 955648 955698 51 2 [1] [1] 3 aroA/ycaL 3‑phosphoshikimate 1‑carboxyvinyltransferase/metallopeptidase YcaL
* * ÷ NZ_CP009273 982928 982984 57 3 [1] [1] 2 ompF/asnS porin OmpF/asparagine‑‑tRNA ligase
* * ÷ NZ_CP009273 988495 988535 41 2 [1] [1] 2 pepN aminopeptidase N
* * ÷ NZ_CP009273 1000084 1000129 46 2 [0] [1] 2 [ycbF] [ycbF]
* * ÷ NZ_CP009273 1006384 1006418 35 2 [1] [1] 2 uup ABC transporter ATP‑binding protein
* * ÷ NZ_CP009273 1007111 1007119 9 2 [1] [1] 2 uup ABC transporter ATP‑binding protein
* * ÷ NZ_CP009273 1015871 1015881 11 3 [0] [1] 4 sulA cell division inhibitor SulA
* * ÷ NZ_CP009273 1027056 1027072 17 2 [1] [1] 2 yccA/BW25113_RS05040 FtsH protease modulator YccA/tRNA‑Ser
* * ÷ NZ_CP009273 1039855 1039867 13 2 [0] [1] 2 etp protein‑tyrosine‑phosphatase Etp
* * ÷ NZ_CP009273 1045067 1045102 36 2 [1] [1] 2 gfcA threonine‑rich inner membrane protein GfcA
* * ÷ NZ_CP009273 1050035 1050059 25 2 [1] [1] 2 torS TMAO reductase system sensor histidine kinase/response regulator TorS
* * ÷ NZ_CP009273 1057678 1057710 33 2 [1] [1] 2 torD molecular chaperone TorD
* * ÷ NZ_CP009273 1059439 1059453 15 4 [0] [0] 2 cbpA/yccE curved DNA‑binding protein/YccE family protein
* * ÷ NZ_CP009273 1062927 1063022 96 3 [1] [0] 2 wrbA NAD(P)H:quinone oxidoreductase
* * ÷ NZ_CP009273 1067906 1067977 72 2 [1] [1] 2 rutB peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB
* * ÷ NZ_CP009273 1069126 1069171 46 2 [1] [1] 2 rutA pyrimidine utilization protein A
* * ÷ NZ_CP009273 1077053 1077096 44 3 [1] [1] 2 BW25113_RS05295 FTR1 family protein
* * ÷ NZ_CP009273 1088066 1088092 27 2 [0] [1] 2 pgaA/dgcT poly‑beta‑1,6 N‑acetyl‑D‑glucosamine export porin PgaA/GGDEF domain‑containing protein
* * ÷ NZ_CP009273 1103596 1103630 35 2 [1] [1] 2 mdoC glucans biosynthesis protein MdoC
* * ÷ NZ_CP009273 1114149 1114157 9 5 [1] [0] 2 yceJ cytochrome b
* * ÷ NZ_CP009273 1126424 1126460 37 2 [1] [1] 2 flgA/flgB flagellar basal body P‑ring formation chaperone FlgA/flagellar basal body rod protein FlgB
* * ÷ NZ_CP009273 1141838 1141848 11 2 [1] [1] 2 yceF 7‑methyl‑GTP pyrophosphatase
* * ÷ NZ_CP009273 1144769 1144800 32 2 [1] [1] 2 fabH beta‑ketoacyl‑ACP synthase III
* * ÷ NZ_CP009273 1145238 1145284 47 2 [1] [1] 2 fabD ACP S‑malonyltransferase
* * ÷ NZ_CP009273 1154709 1154764 56 4 [1] [1] 2 [ptsG] [ptsG]
* * ÷ NZ_CP009273 1164431 1164460 30 2 [1] [1] 2 comR/bhsA TetR family copper‑responsive transcriptional repressor ComR/multiple stress resistance protein BhsA
* * ÷ NZ_CP009273 1166357 1166367 11 2 [0] [1] 2 mfd transcription‑repair coupling factor
* * ÷ NZ_CP009273 1205299 1205324 26 2 [1] [1] 3 pinE site‑specific DNA recombinase
* * ÷ NZ_CP009273 1206606 1206666 61 2 [1] [1] 2 [mcrA] [mcrA]
* * ÷ NZ_CP009273 1207495 1207593 99 2 [1] [1] 2 iraM/BW25113_RS25985 anti‑adapter protein IraM/protein YmgK
* * ÷ NZ_CP009273 1207726 1207801 76 2 [1] [1] 3 [BW25113_RS25985] [BW25113_RS25985]
* * ÷ NZ_CP009273 1209996 1210079 84 2 [1] [1] 2 bluF blue light‑responsive regulator BluF
* * ÷ NZ_CP009273 1210198 1210218 21 2 [1] [1] 2 bluF blue light‑responsive regulator BluF
* * ÷ NZ_CP009273 1211266 1211304 39 2 [1] [1] 2 ycgZ regulatory protein YcgZ
* * ÷ NZ_CP009273 1212100 1212115 16 2 [1] [0] 2 ariR/BW25113_RS06060 biofilm/acid‑resistance regulator AriR/hypothetical protein
* * ÷ NZ_CP009273 1225922 1226011 90 2 [1] [1] 2 hlyE/umuD hemolysin HlyE/translesion error‑prone DNA polymerase V autoproteolytic subunit
* * ÷ NZ_CP009273 1230578 1230655 78 2 [1] [1] 3 fadR fatty acid metabolism transcriptional regulator FadR
* * ÷ NZ_CP009273 1233872 1233904 33 2 [1] [1] 2 dadA D‑amino acid dehydrogenase
* * ÷ NZ_CP009273 1234879 1235007 129 3 [1] [1] 2 dadX catabolic alanine racemase DadX
* * ÷ NZ_CP009273 1239815 1239873 59 2 [1] [0] 2 ycgR flagellar brake protein
* * ÷ NZ_CP009273 1247270 1247334 65 3 [1] [1] 3 dhaR dihydroxyacetone kinase operon transcriptional regulator DhaR
* * ÷ NZ_CP009273 1253248 1253289 42 2 [1] [1] 2 [ychF] [ychF]
* * ÷ NZ_CP009273 1254350 1254360 11 2 [1] [0] 3 ychH stress‑induced protein YchH
* * ÷ NZ_CP009273 1257278 1257292 15 4 [0] [1] 2 prs ribose‑phosphate diphosphokinase
* * ÷ NZ_CP009273 1257436 1257456 21 3 [1] [1] 2 prs/ispE ribose‑phosphate diphosphokinase/4‑(cytidine 5'‑diphospho)‑2‑C‑methyl‑D‑erythritol kinase
* * ÷ NZ_CP009273 1260157 1260217 61 2 [1] [1] 2 hemA glutamyl‑tRNA reductase
* * ÷ NZ_CP009273 1262310 1262320 11 3 [0] [1] 4 prmC peptide chain release factor N(5)‑glutamine methyltransferase
* * ÷ NZ_CP009273 1264130 1264175 46 3 [1] [1] 2 kdsA 3‑deoxy‑8‑phosphooctulonate synthase
* * ÷ NZ_CP009273 1271272 1271279 8 3 [1] [0] 3 narL two‑component system response regulator NarL
* * ÷ NZ_CP009273 1273561 1273578 18 2 [1] [0] 2 narK nitrate transporter NarK
* * ÷ NZ_CP009273 1287021 1287045 25 2 [1] [1] 3 galU UTP‑‑glucose‑1‑phosphate uridylyltransferase GalU
* * ÷ NZ_CP009273 1288456 1288489 34 2 [1] [0] 2 hns/tdk DNA‑binding transcriptional regulator H‑NS/thymidine kinase
* * ÷ NZ_CP009273 1295328 1295350 23 2 [1] [1] 2 BW25113_RS25865/oppA hypothetical protein/oligopeptide ABC transporter substrate‑binding protein OppA
* * ÷ NZ_CP009273 1297596 1297661 66 2 [0] [1] 2 oppB oligopeptide ABC transporter permease OppB
* * ÷ NZ_CP009273 1302295 1302305 11 2 [0] [1] 2 cls cardiolipin synthase
* * ÷ NZ_CP009273 1307084 1307177 94 3 [1] [1] 2 [yciB]–[yciC] [yciB],[yciC]
* * ÷ NZ_CP009273 1307284 1307342 59 3 [1] [1] 2 yciC YciC family protein
* * ÷ NZ_CP009273 1309470 1309513 44 2 [1] [1] 2 [yciE] [yciE]
* * ÷ NZ_CP009273 1310407 1310438 32 3 [1] [0] 2 yciG/trpA general stress protein/tryptophan synthase subunit alpha
* * ÷ NZ_CP009273 1310528 1310677 150 3 [1] [1] 2 [trpA] [trpA]
* * ÷ NZ_CP009273 1310968 1310992 25 2 [1] [1] 2 trpA tryptophan synthase subunit alpha
* * ÷ NZ_CP009273 1311714 1311772 59 2 [1] [1] 2 trpB tryptophan synthase subunit beta
* * ÷ NZ_CP009273 1312166 1312216 51 2 [0] [1] 3 trpB tryptophan synthase subunit beta
* * ÷ NZ_CP009273 1314534 1314565 32 2 [0] [1] 2 trpD bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD
* * ÷ NZ_CP009273 1314765 1314837 73 2 [1] [1] 2 trpD bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD
* * ÷ NZ_CP009273 1315241 1315306 66 2 [1] [1] 2 trpD bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD
* * ÷ NZ_CP009273 1318132 1318169 38 2 [1] [0] 3 yciV RNase AM
* * ÷ NZ_CP009273 1323736 1323754 19 2 [1] [1] 2 sohB protease SohB
* * ÷ NZ_CP009273 1331239 1331331 93 2 [1] [1] 2 acnA aconitate hydratase AcnA
* * ÷ NZ_CP009273 1332407 1332421 15 2 [1] [0] 2 acnA aconitate hydratase AcnA
* * ÷ NZ_CP009273 1332558 1332600 43 2 [1] [1] 2 acnA aconitate hydratase AcnA
* * ÷ NZ_CP009273 1333290 1333339 50 2 [1] [1] 2 ribA GTP cyclohydrolase II
* * ÷ NZ_CP009273 1339139 1339139 1 3 [0] [0] 4 pdeR cyclic di‑GMP phosphodiesterase
* * ÷ NZ_CP009273 1352789 1352799 11 3 [1] [0] 2 puuP putrescine/proton symporter PuuP
* * ÷ NZ_CP009273 1355530 1355595 66 2 [1] [0] 2 puuD gamma‑glutamyl‑gamma‑aminobutyrate hydrolase
* * ÷ NZ_CP009273 1366677 1366708 32 2 [1] [1] 2 ycjN ABC transporter substrate‑binding protein
* * ÷ NZ_CP009273 1374440 1374448 9 2 [1] [0] 3 pgmB beta‑phosphoglucomutase
* * ÷ NZ_CP009273 1379733 1379814 82 2 [1] [1] 2 [ycjX]–[ycjF] [ycjX],[ycjF]
* * ÷ NZ_CP009273 1400075 1400118 44 2 [1] [1] 4 abgR/smrA LysR family transcriptional regulator/DNA endonuclease SmrA
* * ÷ NZ_CP009273 1410564 1410580 17 2 [0] [0] 3 recE exodeoxyribonuclease VIII
* * ÷ NZ_CP009273 1414263 1414267 5 2 [0] [1] 3 racR DNA‑binding transcriptional repressor RacR
* * ÷ NZ_CP009273 1421599 1421654 56 2 [1] [1] 2 [ynaA]–[BW25113_RS07175] [ynaA],[BW25113_RS07175]
* * ÷ NZ_CP009273 1423353 1423368 16 2 [1] [1] 3 stfR prophage tail fiber N‑terminal domain‑containing protein
* * ÷ NZ_CP009273 1433363 1433372 10 3 [0] [1] 2 nifJ pyruvate:ferredoxin (flavodoxin) oxidoreductase
* * ÷ NZ_CP009273 1439287 1439360 74 2 [1] [1] 2 ydbH YdbH family protein
* * ÷ NZ_CP009273 1445787 1445821 35 2 [1] [1] 2 tynA/paaZ primary‑amine oxidase/phenylacetic acid degradation bifunctional protein PaaZ
* * ÷ NZ_CP009273 1451125 1451133 9 2 [1] [0] 2 paaK phenylacetate‑CoA oxygenase/reductase subunit PaaK
* * ÷ NZ_CP009273 1459363 1459384 22 2 [1] [1] 3 paaY/BW25113_RS25580 phenylacetic acid degradation protein PaaY/hypothetical protein
* * ÷ NZ_CP009273 1459434 1459512 79 3 [1] [1] 2 [BW25113_RS25580] [BW25113_RS25580]
* * ÷ NZ_CP009273 1524581 1524598 18 3 [1] [1] 5 BW25113_RS26145
BW25113_RS25600		 hypothetical protein
protein YncO
* * ÷ NZ_CP009273 1532329 1532367 39 2 [1] [1] 2 narH nitrate reductase subunit beta
* * ÷ NZ_CP009273 1553074 1553090 17 2 [1] [1] 3 ddpD ABC transporter ATP‑binding protein
* * ÷ NZ_CP009273 1620625 1620639 15 2 [0] [0] 5 dcp peptidyl‑dipeptidase Dcp
* * ÷ NZ_CP009273 1633144 1633174 31 2 [0] [1] 2 cspI/rzpQ cold shock protein CspI/DUF2514 domain‑containing protein
* * ÷ NZ_CP009273 1725297 1725304 8 2 [1] [1] 2 lhr ATP‑dependent helicase
* * ÷ NZ_CP009273 1748968 1749083 116 2 [1] [1] 3 ydhY/fumD ferredoxin‑like protein/fumarate hydratase FumD
* * ÷ NZ_CP009273 1807098 1807115 18 4 [0] [0] 2 BW25113_RS09050 hypothetical protein
* * ÷ NZ_CP009273 1902325 1902410 86 3 [1] [1] 2 yobF/yebO DUF2627 domain‑containing protein/YebO family protein
* * ÷ NZ_CP009273 1952533 1952596 64 2 [1] [1] 2 torY/cutC NapC/NirT family cytochrome c/copper homeostasis protein CutC
* * ÷ NZ_CP009273 2010145 2010203 59 2 [1] [1] 2 fliI flagellar protein export ATPase FliI
* * ÷ NZ_CP009273 2027387 2027448 62 2 [1] [1] 2 drpB/ompC cell division protein DrpB/porin OmpC
* * ÷ NZ_CP009273 2080786 2080795 10 2 [1] [0] 2 yoeI/yeeY membrane protein YoeI/LysR substrate‑binding domain‑containing protein
* * ÷ NZ_CP009273 2097503 2097575 73 2 [1] [1] 2 wbbK glycosyltransferase family 1 protein
* * ÷ NZ_CP009273 2099003 2099033 31 2 [1] [0] 2 wbbI beta‑1,6‑galactofuranosyltransferase
* * ÷ NZ_CP009273 2162519 2162538 20 2 [0] [1] 2 yegS lipid kinase YegS
* * ÷ NZ_CP009273 2246753 2246794 42 2 [1] [0] 2 nupX NupC/NupG family nucleoside CNT transporter
* * ÷ NZ_CP009273 2310109 2310133 25 3 [1] [1] 2 rcsB response regulator transcription factor RcsB
* * ÷ NZ_CP009273 2316653 2316677 25 6 [0] [1] 2 atoC acetoacetate metabolism transcriptional regulator AtoC
* * ÷ NZ_CP009273 2337806 2337826 21 2 [1] [1] 2 yfaL/nrdA AIDA‑I family autotransporter adhesin YfaL/EhaC/ribonucleoside‑diphosphate reductase subunit alpha
* * ÷ NZ_CP009273 2356876 2356887 12 2 [1] [0] 2 yfaY nicotinamide mononucleotide deamidase‑related protein YfaY
* * ÷ NZ_CP009273 2370749 2370768 20 2 [1] [1] 2 menH 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase
* * ÷ NZ_CP009273 2462851 2462975 125 2 [1] [0] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2463045 2463091 47 2 [0] [1] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2505242 2505312 71 2 [1] [1] 2 mntH Nramp family divalent metal transporter
* * ÷ NZ_CP009273 2628310 2628315 6 2 [0] [0] 2 xseA exodeoxyribonuclease VII large subunit
* * ÷ NZ_CP009273 2684907 2684909 3 2 [0] [1] 2 qseE/purL two component system sensor histidine kinase QseE/GlrK/phosphoribosylformylglycinamidine synthase
* * ÷ NZ_CP009273 2687984 2688009 26 3 [1] [1] 4 purL phosphoribosylformylglycinamidine synthase
* * ÷ NZ_CP009273 2727592 2727607 16 3 [0] [0] 2 clpB/pgeF ATP‑dependent chaperone ClpB/purine nucleoside phosphorylase YfiH
* * ÷ NZ_CP009273 2727741 2727817 77 4 [1] [1] 2 pgeF purine nucleoside phosphorylase YfiH
* * ÷ NZ_CP009273 2757084 2757104 21 4 [1] [1] 2 abpA anti‑bacteriophage protein AbpA
* * ÷ NZ_CP009273 2767749 2767765 17 2 [1] [1] 3 BW25113_RS13770 hypothetical protein
* * ÷ NZ_CP009273 2798158 2798186 29 2 [1] [1] 3 [proV] [proV]
* * ÷ NZ_CP009273 2877723 2877785 63 2 [1] [1] 3 casA/cas3 type I‑E CRISPR‑associated protein Cse1/CasA/CRISPR‑associated helicase/endonuclease Cas3
* * ÷ NZ_CP009273 2984567 2984577 11 2 [0] [1] 3 BW25113_RS14825/ygeG hypothetical protein/tetratricopeptide repeat protein
* * ÷ NZ_CP009273 2988594 2988647 54 2 [1] [0] 2 BW25113_RS14850/BW25113_RS26010 response regulator transcription factor/hypothetical protein
* * ÷ NZ_CP009273 3017624 3017630 7 3 [0] [1] 2 xdhD/xanQ molybdopterin‑dependent oxidoreductase Mo/Fe‑S‑binding subunit/xanthine/proton symporter XanQ
* * ÷ NZ_CP009273 3247122 3247157 36 3 [1] [1] 2 yhaJ DNA‑binding transcriptional regulator YhaJ
* * ÷ NZ_CP009273 3259521 3259531 11 2 [1] [1] 2 tdcA transcriptional regulator TdcA
* * ÷ NZ_CP009273 3280615 3280651 37 3 [1] [0] 2 agaI/yraH galactosamine‑6‑phosphate isomerase/fimbrial protein
* * ÷ NZ_CP009273 3378662 3378711 50 2 [1] [1] 2 argR/yhcN transcriptional regulator ArgR/peroxide/acid stress response protein YhcN
* * ÷ NZ_CP009273 3468569 3468579 11 2 [0] [1] 2 tusC sulfurtransferase complex subunit TusC
* * ÷ NZ_CP009273 3647067 3647077 11 3 [0] [0] 2 BW25113_RS18165/slp hypothetical protein/outer membrane lipoprotein Slp
* * ÷ NZ_CP009273 3792518 3792620 103 3 [1] [1] 2 waaU glycosyltransferase family 9 protein
* * ÷ NZ_CP009273 3797845 3797876 32 3 [1] [1] 2 rfaS LPS core biosynthesis protein RfaS
* * ÷ NZ_CP009273 3798237 3798260 24 2 [1] [1] 2 rfaS LPS core biosynthesis protein RfaS
* * ÷ NZ_CP009273 3996404 3996482 79 2 [1] [1] 3 BW25113_RS19825 hypothetical protein
* * ÷ NZ_CP009273 4037427 4037473 47 2 [1] [1] 4 dsbA/yihF thiol:disulfide interchange protein DsbA/YdgA family protein
* * ÷ NZ_CP009273 4072047 4072062 16 3 [0] [1] 3 fabY/BW25113_RS26270 fatty acid biosynthesis protein FabY/hypothetical protein
* * ÷ NZ_CP009273 4225631 4225713 83 2 [0] [1] 2 pgi/yjbE glucose‑6‑phosphate isomerase/exopolysaccharide production protein YjbE
* * ÷ NZ_CP009273 4241852 4241871 20 4 [0] [1] 2 BW25113_RS20970 SopA family protein
* * ÷ NZ_CP009273 4294334 4294360 27 6 [1] [1] 2 ytcA/yjcS YtcA family lipoprotein/alkyl sulfatase YjcS
* * ÷ NZ_CP009273 4366216 4366226 11 2 [1] [1] 2 ecnA lipoprotein antitoxin entericidin A

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 360104 =NA (NA)20 (1.610) 17/168 0.0 60.6% intergenic (‑35/+251) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
?NZ_CP009273 = 360286 13 (1.040)intergenic (‑217/+69) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
* ? NZ_CP009273 = 12032612 (0.160)6 (0.600) 5/136 0.5 58.2% coding (305/630 nt) BW25113_RS05990 hypothetical protein
?NZ_CP009273 = 1205058 7 (0.690)coding (57/540 nt) BW25113_RS06005 phage tail protein
* ? NZ_CP009273 = 1391494NA (NA)13 (1.060) 8/166 0.4 100% intergenic (+145/‑128) BW25113_RS06980/ynaJ IS5‑like element IS5 family transposase/DUF2534 family protein
?NZ_CP009273 1972747 = 0 (0.000)intergenic (‑293/‑487) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
* ? NZ_CP009273 = 19727511 (0.080)10 (0.800) 8/168 0.4 90.9% intergenic (‑297/‑483) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
?NZ_CP009273 = 2283592 NA (NA)intergenic (‑68/‑387) BW25113_RS11435/narP IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP
* ? NZ_CP009273 4532499 =1 (0.080)3 (0.270) 3/150 1.0 67.5% intergenic (+49/‑433) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
?NZ_CP009273 4532813 = 2 (0.180)intergenic (+363/‑119) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
* ? NZ_CP009273 = 45325071 (0.080)8 (0.720) 8/150 0.3 84.7% intergenic (+57/‑425) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
?NZ_CP009273 = 4532803 2 (0.180)intergenic (+353/‑129) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA