breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 49,898 G→A A26T (GCC→ACC)  folA → type 3 dihydrofolate reductase
RA 49,912 G→T W30C (TGG→TGT)  folA → type 3 dihydrofolate reductase
MC JC 2,399,465 Δ7 bp coding (650‑656/939 nt) lrhA ← transcriptional regulator LrhA

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 17030 17067 38 4 [1] [1] 4 mokC/nhaA type I toxin‑antitoxin system toxin MokC/Na+/H+ antiporter NhaA
* * ÷ NZ_CP009273 80518 80602 85 2 [1] [1] 3 leuL/leuO leu operon leader peptide/transcriptional regulator LeuO
* * ÷ NZ_CP009273 118313 118375 63 2 [1] [1] 2 aroP/pdhR aromatic amino acid transporter AroP/pyruvate dehydrogenase complex transcriptional repressor PdhR
* * ÷ NZ_CP009273 124497 124502 6 2 [0] [0] 2 lpdA dihydrolipoyl dehydrogenase
* * ÷ NZ_CP009273 153728 153750 23 2 [1] [1] 2 [folK] [folK]
* * ÷ NZ_CP009273 233704 233760 57 2 [1] [1] 2 BW25113_RS01085/BW25113_RS01090 tRNA‑Asp/lipoprotein
* * ÷ NZ_CP009273 323578 323631 54 2 [1] [1] 2 betB betaine‑aldehyde dehydrogenase
* * ÷ NZ_CP009273 356981 357591 611 2 [0] [1] 5 [lacA] [lacA]
* * ÷ NZ_CP009273 428459 428567 109 2 [1] [1] 2 nrdR transcriptional regulator NrdR
* * ÷ NZ_CP009273 553606 553631 26 2 [1] [0] 3 folD/fimA bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD/type 1 fimbrial major subunit FimA
* * ÷ NZ_CP009273 578979 579045 67 2 [1] [0] 2 BW25113_RS26085/appY tail fiber assembly protein/DNA‑binding transcriptional activator AppY
* * ÷ NZ_CP009273 603135 603184 50 3 [1] [1] 3 ybdK/hokE YbdK family carboxylate‑amine ligase/type I toxin‑antitoxin system toxin HokE
* * ÷ NZ_CP009273 609506 609512 7 4 [0] [0] 2 ybdZ enterobactin biosynthesis protein YbdZ
* * ÷ NZ_CP009273 610488 610539 52 2 [1] [1] 2 entF enterobactin non‑ribosomal peptide synthetase EntF
* * ÷ NZ_CP009273 612655 612690 36 2 [1] [1] 3 entF enterobactin non‑ribosomal peptide synthetase EntF
* * ÷ NZ_CP009273 622573 622594 22 2 [1] [1] 3 entE (2,3‑dihydroxybenzoyl)adenylate synthase EntE
* * ÷ NZ_CP009273 647574 647621 48 2 [1] [1] 2 citC/dpiB [citrate (pro‑3S)‑lyase] ligase/sensor histidine kinase DpiB
* * ÷ NZ_CP009273 662778 662861 84 2 [1] [1] 2 mrdA peptidoglycan DD‑transpeptidase MrdA
* * ÷ NZ_CP009273 724413 724435 23 2 [1] [0] 2 kdpF/ybfA K(+)‑transporting ATPase subunit F/YbfA family protein
* * ÷ NZ_CP009273 729238 729281 44 2 [1] [1] 3 BW25113_RS03630 hypothetical protein
* * ÷ NZ_CP009273 731537 731649 113 2 [1] [1] 2 BW25113_RS03640 hypothetical protein
* * ÷ NZ_CP009273 731728 731743 16 2 [1] [0] 2 BW25113_RS03640/ybfQ hypothetical protein/ISAs1 family transposase
* * ÷ NZ_CP009273 748515 748584 70 3 [1] [1] 3 ybgD/gltA fimbrial protein/citrate synthase
* * ÷ NZ_CP009273 772461 772509 49 2 [1] [1] 2 tolA cell envelope integrity protein TolA
* * ÷ NZ_CP009273 772572 772622 51 2 [1] [1] 2 tolA cell envelope integrity protein TolA
* * ÷ NZ_CP009273 772694 772734 41 2 [1] [1] 2 tolA cell envelope integrity protein TolA
* * ÷ NZ_CP009273 783650 783673 24 2 [1] [0] 6 galM galactose‑1‑epimerase
* * ÷ NZ_CP009273 794326 794345 20 3 [1] [1] 2 pgl 6‑phosphogluconolactonase
* * ÷ NZ_CP009273 801574 801629 56 2 [1] [1] 3 ybhC putative acyl‑CoA thioester hydrolase
* * ÷ NZ_CP009273 819325 819356 32 2 [1] [1] 2 ybhP endonuclease/exonuclease/phosphatase family protein
* * ÷ NZ_CP009273 829220 829245 26 2 [1] [1] 3 dinG ATP‑dependent DNA helicase DinG
* * ÷ NZ_CP009273 895069 895178 110 2 [1] [1] 3 [rlmC] [rlmC]
* * ÷ NZ_CP009273 897367 897434 68 2 [0] [1] 2 artQ arginine ABC transporter permease ArtQ
* * ÷ NZ_CP009273 897779 897789 11 3 [0] [1] 2 artJ arginine ABC transporter substrate‑binding protein
* * ÷ NZ_CP009273 903739 903749 11 2 [1] [0] 2 [ltaE] [ltaE]
* * ÷ NZ_CP009273 908324 908371 48 2 [1] [1] 3 hcp hydroxylamine reductase
* * ÷ NZ_CP009273 908433 908477 45 2 [0] [1] 2 hcp hydroxylamine reductase
* * ÷ NZ_CP009273 909257 909287 31 2 [1] [0] 2 [hcp] [hcp]
* * ÷ NZ_CP009273 912073 912091 19 2 [0] [1] 2 ybjD ATP‑dependent endonuclease
* * ÷ NZ_CP009273 946826 946892 67 2 [1] [1] 3 pflB formate C‑acetyltransferase
* * ÷ NZ_CP009273 967570 967577 8 2 [1] [1] 3 ycbJ YcbJ family phosphotransferase
* * ÷ NZ_CP009273 970352 970379 28 3 [1] [1] 2 mukF chromosome partition protein MukF
* * ÷ NZ_CP009273 980094 980190 97 2 [1] [1] 2 aspC aspartate transaminase
* * ÷ NZ_CP009273 982718 982779 62 3 [0] [1] 3 ompF/asnS porin OmpF/asparagine‑‑tRNA ligase
* * ÷ NZ_CP009273 993134 993307 174 2 [1] [1] 2 ssuE/elfA NADPH‑dependent FMN reductase/fimbrial protein
* * ÷ NZ_CP009273 1010962 1011015 54 2 [1] [1] 2 pqiC/rmf membrane integrity‑associated transporter subunit PqiC/ribosome modulation factor
* * ÷ NZ_CP009273 1023503 1023530 28 2 [1] [1] 2 yccU CoA‑binding protein
* * ÷ NZ_CP009273 1029160 1029189 30 2 [1] [1] 2 hyaB Ni/Fe‑hydrogenase large subunit
* * ÷ NZ_CP009273 1035904 1035946 43 2 [1] [0] 2 cbdX cytochrome bd‑II oxidase subunit CbdX
* * ÷ NZ_CP009273 1061606 1061634 29 3 [1] [1] 2 agp bifunctional glucose‑1‑phosphatase/inositol phosphatase
* * ÷ NZ_CP009273 1077017 1077026 10 3 [1] [1] 2 BW25113_RS05295 FTR1 family protein
* * ÷ NZ_CP009273 1080325 1080392 68 2 [1] [1] 3 efeB/phoH iron uptake transporter deferrochelatase/peroxidase subunit/phosphate starvation‑inducible protein PhoH
* * ÷ NZ_CP009273 1098072 1098109 38 2 [0] [1] 2 csgD biofilm master transcriptional regulator CsgD
* * ÷ NZ_CP009273 1098866 1098948 83 3 [1] [1] 2 csgD/csgB biofilm master transcriptional regulator CsgD/curli minor subunit CsgB
* * ÷ NZ_CP009273 1103815 1103872 58 2 [1] [1] 3 mdoC glucans biosynthesis protein MdoC
* * ÷ NZ_CP009273 1116697 1116737 41 2 [0] [1] 2 [dinI] [dinI]
* * ÷ NZ_CP009273 1130257 1130311 55 2 [1] [1] 2 flgG flagellar basal‑body rod protein FlgG
* * ÷ NZ_CP009273 1153074 1153110 37 2 [1] [1] 2 ycfH/ptsG metal‑dependent hydrolase/PTS glucose transporter subunit IIBC
* * ÷ NZ_CP009273 1167436 1167452 17 2 [1] [1] 2 mfd transcription‑repair coupling factor
* * ÷ NZ_CP009273 1168362 1168401 40 2 [1] [1] 2 mfd transcription‑repair coupling factor
* * ÷ NZ_CP009273 1179014 1179027 14 3 [1] [1] 3 potC spermidine/putrescine ABC transporter permease PotC
* * ÷ NZ_CP009273 1187242 1187320 79 2 [1] [1] 3 purB adenylosuccinate lyase
* * ÷ NZ_CP009273 1187527 1187580 54 2 [1] [1] 3 hflD high frequency lysogenization protein HflD
* * ÷ NZ_CP009273 1194109 1194118 10 2 [0] [0] 2 BW25113_RS05920/lit hypothetical protein/cell death peptidase Lit
* * ÷ NZ_CP009273 1201158 1201162 5 3 [1] [0] 2 BW25113_RS05970 hypothetical protein
* * ÷ NZ_CP009273 1205052 1205074 23 2 [1] [0] 9 BW25113_RS06005 phage tail protein
* * ÷ NZ_CP009273 1205710 1205763 54 3 [1] [1] 2 pinE/mcrA site‑specific DNA recombinase/5‑methylcytosine‑specific endonuclease McrA
* * ÷ NZ_CP009273 1207143 1207156 14 2 [1] [1] 2 iraM anti‑adapter protein IraM
* * ÷ NZ_CP009273 1208194 1208202 9 2 [0] [0] 2 ycgX DUF1398 domain‑containing protein
* * ÷ NZ_CP009273 1211921 1211994 74 4 [1] [0] 2 ariR biofilm/acid‑resistance regulator AriR
* * ÷ NZ_CP009273 1214435 1214445 11 2 [1] [1] 2 [BW25113_RS06070] [BW25113_RS06070]
* * ÷ NZ_CP009273 1231139 1231160 22 2 [1] [1] 2 fadR/ycgB fatty acid metabolism transcriptional regulator FadR/SpoVR family protein
* * ÷ NZ_CP009273 1233593 1233636 44 2 [1] [1] 2 dadA D‑amino acid dehydrogenase
* * ÷ NZ_CP009273 1236897 1236957 61 2 [1] [1] 2 cvrA potassium/proton antiporter
* * ÷ NZ_CP009273 1240566 1240653 88 3 [1] [1] 2 [BW25113_RS06225] [BW25113_RS06225]
* * ÷ NZ_CP009273 1242717 1242735 19 3 [1] [1] 2 treA alpha,alpha‑trehalase
* * ÷ NZ_CP009273 1246106 1246114 9 2 [0] [1] 2 dhaK dihydroxyacetone kinase subunit DhaK
* * ÷ NZ_CP009273 1247276 1247340 65 2 [1] [1] 2 dhaR dihydroxyacetone kinase operon transcriptional regulator DhaR
* * ÷ NZ_CP009273 1248008 1248037 30 2 [0] [1] 2 dhaR dihydroxyacetone kinase operon transcriptional regulator DhaR
* * ÷ NZ_CP009273 1261355 1261391 37 2 [1] [1] 2 prfA peptide chain release factor 1
* * ÷ NZ_CP009273 1272989 1273018 30 2 [1] [1] 3 narX nitrate/nitrite two‑component system sensor histidine kinase NarX
* * ÷ NZ_CP009273 1274733 1274772 40 2 [1] [1] 2 narK nitrate transporter NarK
* * ÷ NZ_CP009273 1274863 1275008 146 2 [1] [1] 2 narK/narG nitrate transporter NarK/nitrate reductase subunit alpha
* * ÷ NZ_CP009273 1275398 1275427 30 2 [1] [1] 2 narG nitrate reductase subunit alpha
* * ÷ NZ_CP009273 1291811 1291859 49 2 [1] [1] 3 adhE bifunctional acetaldehyde‑CoA/alcohol dehydrogenase
* * ÷ NZ_CP009273 1294166 1294169 4 2 [0] [0] 2 ychE NAAT family transporter YchE
* * ÷ NZ_CP009273 1294967 1294998 32 3 [1] [1] 3 BW25113_RS25865 hypothetical protein
* * ÷ NZ_CP009273 1296575 1296632 58 2 [0] [1] 2 oppA oligopeptide ABC transporter substrate‑binding protein OppA
* * ÷ NZ_CP009273 1301278 1301314 37 2 [1] [1] 2 yciU HI1450 family dsDNA‑mimic protein
* * ÷ NZ_CP009273 1302083 1302141 59 3 [1] [0] 2 cls cardiolipin synthase
* * ÷ NZ_CP009273 1308427 1308497 71 2 [1] [1] 2 ompW outer membrane protein OmpW
* * ÷ NZ_CP009273 1310958 1310982 25 2 [1] [1] 2 trpA tryptophan synthase subunit alpha
* * ÷ NZ_CP009273 1312109 1312120 12 7 [0] [1] 2 trpB tryptophan synthase subunit beta
* * ÷ NZ_CP009273 1313555 1313578 24 2 [1] [1] 2 trpCF bifunctional indole‑3‑glycerol‑phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF
* * ÷ NZ_CP009273 1314695 1314704 10 2 [0] [0] 2 trpD bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD
* * ÷ NZ_CP009273 1315012 1315055 44 2 [1] [0] 2 trpD bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD
* * ÷ NZ_CP009273 1317451 1317497 47 2 [0] [1] 2 [yciV] [yciV]
* * ÷ NZ_CP009273 1320586 1320627 42 2 [1] [1] 2 yciQ DUF2207 domain‑containing protein
* * ÷ NZ_CP009273 1322358 1322427 70 2 [1] [1] 2 cobO cob(I)yrinic acid a,c‑diamide adenosyltransferase
* * ÷ NZ_CP009273 1322518 1322531 14 2 [1] [0] 2 cobO cob(I)yrinic acid a,c‑diamide adenosyltransferase
* * ÷ NZ_CP009273 1324125 1324151 27 3 [1] [1] 3 sohB protease SohB
* * ÷ NZ_CP009273 1327571 1327599 29 3 [1] [1] 2 topA type I DNA topoisomerase
* * ÷ NZ_CP009273 1330348 1330358 11 2 [0] [1] 2 acnA aconitate hydratase AcnA
* * ÷ NZ_CP009273 1335356 1335366 11 3 [1] [0] 2 lapB lipopolysaccharide assembly protein LapB
* * ÷ NZ_CP009273 1336005 1336021 17 2 [1] [1] 2 lapB/pyrF lipopolysaccharide assembly protein LapB/orotidine‑5'‑phosphate decarboxylase
* * ÷ NZ_CP009273 1348935 1348949 15 3 [1] [1] 2 sapB putrescine ABC transporter permease SapB
* * ÷ NZ_CP009273 1350432 1350494 63 2 [1] [0] 2 sapA peptide ABC transporter substrate‑binding protein SapA
* * ÷ NZ_CP009273 1350722 1350763 42 4 [1] [1] 2 sapA peptide ABC transporter substrate‑binding protein SapA
* * ÷ NZ_CP009273 1358672 1358705 34 2 [1] [0] 2 puuB gamma‑glutamylputrescine oxidase
* * ÷ NZ_CP009273 1362560 1362581 22 3 [1] [1] 2 pspA phage shock protein PspA
* * ÷ NZ_CP009273 1366052 1366070 19 2 [0] [1] 2 ycjM glucosylglycerate phosphorylase
* * ÷ NZ_CP009273 1368365 1368375 11 2 [0] [1] 3 ycjP carbohydrate ABC transporter permease
* * ÷ NZ_CP009273 1370351 1370405 55 2 [1] [1] 2 ycjR sugar phosphate isomerase/epimerase
* * ÷ NZ_CP009273 1371724 1371748 25 2 [0] [1] 2 ycjS Gfo/Idh/MocA family oxidoreductase
* * ÷ NZ_CP009273 1397572 1397639 68 2 [0] [1] 2 abgA p‑aminobenzoyl‑glutamate hydrolase subunit AbgA
* * ÷ NZ_CP009273 1409468 1409489 22 2 [1] [1] 2 recE exodeoxyribonuclease VIII
* * ÷ NZ_CP009273 1424350 1424355 6 2 [0] [1] 4 stfR prophage tail fiber N‑terminal domain‑containing protein
* * ÷ NZ_CP009273 1431338 1431364 27 2 [1] [1] 2 ompN/nifJ porin OmpN/pyruvate:ferredoxin (flavodoxin) oxidoreductase
* * ÷ NZ_CP009273 1433705 1433779 75 2 [1] [1] 2 nifJ pyruvate:ferredoxin (flavodoxin) oxidoreductase
* * ÷ NZ_CP009273 1437108 1437216 109 3 [1] [1] 2 ldhA/ydbH D‑lactate dehydrogenase/YdbH family protein
* * ÷ NZ_CP009273 1477264 1477264 1 2 [0] [0] 2 azoR/hrpA FMN‑dependent NADH‑azoreductase/ATP‑dependent RNA helicase HrpA
* * ÷ NZ_CP009273 1524392 1524470 79 2 [1] [0] 3 [BW25113_RS26145] [BW25113_RS26145]
* * ÷ NZ_CP009273 1577738 1577740 3 5 [0] [1] 2 ydeO acid stress response transcriptional regulator YdeO
* * ÷ NZ_CP009273 1592559 1592584 26 2 [1] [1] 2 BW25113_RS07915/lsrK ECSE_1600 family autotransporter/autoinducer‑2 kinase
* * ÷ NZ_CP009273 1633174 1633179 6 3 [0] [0] 2 cspI/rzpQ cold shock protein CspI/DUF2514 domain‑containing protein
* * ÷ NZ_CP009273 1800430 1800497 68 2 [1] [1] 2 ydiY/pfkB YdiY family protein/6‑phosphofructokinase II
* * ÷ NZ_CP009273 1806944 1806959 16 2 [0] [1] 2 BW25113_RS09050 hypothetical protein
* * ÷ NZ_CP009273 1945786 1945821 36 2 [1] [0] 2 yecE DUF72 domain‑containing protein
* * ÷ NZ_CP009273 1973110 1973143 34 2 [0] [1] 4 flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
* * ÷ NZ_CP009273 1974578 1974586 9 3 [1] [0] 2 otsA alpha,alpha‑trehalose‑phosphate synthase
* * ÷ NZ_CP009273 1982028 1982061 34 2 [0] [1] 2 yecR/ftnA YecR‑like lipofamily protein/non‑heme ferritin
* * ÷ NZ_CP009273 1994186 1994188 3 2 [0] [0] 3 fliZ flagella biosynthesis regulatory protein FliZ
* * ÷ NZ_CP009273 2014237 2014335 99 2 [1] [1] 2 fliM flagellar motor switch protein FliM
* * ÷ NZ_CP009273 2026087 2026160 74 2 [1] [1] 2 yedJ phosphohydrolase
* * ÷ NZ_CP009273 2027080 2027114 35 2 [1] [0] 2 drpB/ompC cell division protein DrpB/porin OmpC
* * ÷ NZ_CP009273 2027357 2027422 66 3 [1] [1] 3 drpB/ompC cell division protein DrpB/porin OmpC
* * ÷ NZ_CP009273 2034738 2034772 35 3 [0] [0] 2 msrQ/zinT protein‑methionine‑sulfoxide reductase heme‑binding subunit MsrQ/metal‑binding protein ZinT
* * ÷ NZ_CP009273 2097499 2097580 82 2 [1] [1] 2 wbbK glycosyltransferase family 1 protein
* * ÷ NZ_CP009273 2144602 2144636 35 2 [0] [1] 2 yegI/yegJ protein kinase YegI/DUF2314 domain‑containing protein
* * ÷ NZ_CP009273 2259108 2259159 52 4 [1] [0] 3 yeiP elongation factor P‑like protein YeiP
* * ÷ NZ_CP009273 2295544 2295564 21 2 [1] [1] 2 napA periplasmic nitrate reductase subunit alpha
* * ÷ NZ_CP009273 2300310 2300356 47 4 [1] [1] 2 mqo/yojI malate dehydrogenase (quinone)/microcin J25 efflux ABC transporter YojI
* * ÷ NZ_CP009273 2359238 2359276 39 2 [1] [1] 2 ais/arnB lipopolysaccharide core heptose(II)‑phosphate phosphatase Ais/UDP‑4‑amino‑4‑deoxy‑L‑arabinose aminotransferase
* * ÷ NZ_CP009273 2370436 2370461 26 2 [1] [1] 2 menH 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase
* * ÷ NZ_CP009273 2463733 2463743 11 2 [1] [0] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2584446 2584457 12 2 [1] [0] 2 ypfM/yffB protein YpfM/ArsC family reductase
* * ÷ NZ_CP009273 2622441 2622552 112 5 [1] [0] 2 [BW25113_RS25940] [BW25113_RS25940]
* * ÷ NZ_CP009273 2637315 2637326 12 2 [1] [0] 2 rlmN bifunctional tRNA (adenosine(37)‑C2)‑methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN
* * ÷ NZ_CP009273 2740688 2740705 18 2 [1] [1] 2 ffh signal recognition particle protein
* * ÷ NZ_CP009273 2753672 2753747 76 4 [1] [1] 3 yfjI YfjI family protein
* * ÷ NZ_CP009273 2768180 2768190 11 4 [1] [1] 2 BW25113_RS13770 hypothetical protein
* * ÷ NZ_CP009273 2779863 2779873 11 3 [0] [1] 2 BW25113_RS26005 alpha‑amylase family glycosyl hydrolase
* * ÷ NZ_CP009273 2877738 2877761 24 3 [1] [0] 2 casA/cas3 type I‑E CRISPR‑associated protein Cse1/CasA/CRISPR‑associated helicase/endonuclease Cas3
* * ÷ NZ_CP009273 2897880 2897907 28 2 [1] [1] 2 ygcE/queE FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE
* * ÷ NZ_CP009273 2898916 2898931 16 2 [0] [1] 2 BW25113_RS14445 hypothetical protein
* * ÷ NZ_CP009273 2951506 2951524 19 2 [1] [1] 3 ptrA pitrilysin
* * ÷ NZ_CP009273 2988529 2988621 93 2 [1] [1] 2 BW25113_RS14850/BW25113_RS26010 response regulator transcription factor/hypothetical protein
* * ÷ NZ_CP009273 3072829 3072875 47 2 [1] [1] 3 cmtB/tkt PTS mannitol transporter subunit IIA/transketolase
* * ÷ NZ_CP009273 3200906 3200916 11 3 [0] [1] 3 ttdB L(+)‑tartrate dehydratase subunit beta
* * ÷ NZ_CP009273 3247145 3247151 7 2 [1] [0] 3 yhaJ DNA‑binding transcriptional regulator YhaJ
* * ÷ NZ_CP009273 3354279 3354334 56 2 [1] [0] 2 gltD/gltF glutamate synthase subunit GltD/DUF1120 domain‑containing protein
* * ÷ NZ_CP009273 3390666 3390695 30 5 [0] [1] 3 rng ribonuclease G
* * ÷ NZ_CP009273 3411524 3411534 11 2 [0] [1] 3 acrF/BW25113_RS16940 multidrug efflux RND transporter permease subunit AcrF/membrane protein
* * ÷ NZ_CP009273 3763197 3763263 67 2 [1] [1] 3 BW25113_RS26240/yibH Imm57 family immunity protein/HlyD family secretion protein
* * ÷ NZ_CP009273 3991470 3991501 32 3 [1] [1] 2 uvrD DNA helicase II
* * ÷ NZ_CP009273 4240765 4240800 36 2 [1] [0] 2 BW25113_RS20970 SopA family protein
* * ÷ NZ_CP009273 4302864 4302913 50 2 [1] [1] 3 alsR/rpiB als operon DNA‑binding transcriptional repressor AlsR/bifunctional allose‑6‑phosphate isomerase/ribose‑5‑phosphate isomerase RpiB
* * ÷ NZ_CP009273 4399889 4399929 41 2 [1] [1] 4 rlmB/yjfI 23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB/DUF2170 family protein
* * ÷ NZ_CP009273 4522630 4522635 6 2 [0] [1] 2 yjhP class I SAM‑dependent methyltransferase
* * ÷ NZ_CP009273 4546382 4546403 22 2 [1] [1] 3 yjiC/idlP YjfZ/YjiC family protein/iraD leader peptide IdlP

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 360104 =NA (NA)20 (1.540) 16/166 0.1 64.5% intergenic (‑35/+251) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
?NZ_CP009273 = 360286 11 (0.850)intergenic (‑217/+69) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
* ? NZ_CP009273 1203246 =4 (0.310)8 (0.760) 7/134 0.3 83.2% coding (290/630 nt) BW25113_RS05990 hypothetical protein
?NZ_CP009273 1205075 = 0 (0.000)coding (40/540 nt) BW25113_RS06005 phage tail protein
* ? NZ_CP009273 = 1391494NA (NA)11 (0.860) 4/164 0.9 100% intergenic (+145/‑128) BW25113_RS06980/ynaJ IS5‑like element IS5 family transposase/DUF2534 family protein
?NZ_CP009273 1972747 = 0 (0.000)intergenic (‑293/‑487) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
* ? NZ_CP009273 = 19727510 (0.000)14 (1.080) 12/166 0.2 100% intergenic (‑297/‑483) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
?NZ_CP009273 = 2283592 NA (NA)intergenic (‑68/‑387) BW25113_RS11435/narP IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP
* ? NZ_CP009273 3463508 =3 (0.230)15 (1.180) 13/162 0.1 83.7% coding (1181/1185 nt) tuf elongation factor Tu
?NZ_CP009273 = 3577553 NA (NA)intergenic (+13/‑211) BW25113_RS17830/BW25113_RS25760 IS1‑like element IS1A family transposase/hypothetical protein
* ? NZ_CP009273 = 34635174 (0.310)9 (0.690) 8/166 0.4 69.2% coding (1172/1185 nt) tuf elongation factor Tu
?NZ_CP009273 3576788 = NA (NA)coding (391/417 nt) BW25113_RS17825 YrhA family protein
* ? NZ_CP009273 4532499 =1 (0.080)10 (0.860) 9/148 0.3 77.2% intergenic (+49/‑433) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
?NZ_CP009273 4532813 = 5 (0.430)intergenic (+363/‑119) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
* ? NZ_CP009273 = 45325071 (0.080)9 (0.780) 8/148 0.3 75.3% intergenic (+57/‑425) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
?NZ_CP009273 = 4532803 5 (0.430)intergenic (+353/‑129) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA