breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
RA | 49,765 | C→T | intergenic (+134/‑58) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
RA | 50,102 | A→C | I94L (ATT→CTT) | folA → | type 3 dihydrofolate reductase |
RA | 1,858,499 | G→C | W131C (TGG→TGC) | yeaD → | D‑hexose‑6‑phosphate mutarotase |
RA | 2,013,868 | A→G | N101D (AAC→GAC) | fliM → | flagellar motor switch protein FliM |
RA | 2,236,491 | A→C | F214C (TTT→TGT) | folE ← | GTP cyclohydrolase I FolE |
JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
RA | 4,171,725 | G→C | D185H (GAC→CAC) | rpoB → | DNA‑directed RNA polymerase subunit beta |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NZ_CP009273 | 356970 | 357574 | 605 | 12 [11] | [10] 13 | [lacA] | [lacA] |
* | * | ÷ | NZ_CP009273 | 3629063 | 3646526–3645391 | 16329–17464 | 149 [0] | [11] 13 | [yhiM]–BW25113_RS18160 | [yhiM],yhiN,pitA,uspB,uspA,BW25113_RS26225,BW25113_RS26230,dtpB,rsmJ,prlC,rlmJ,gorA,dinQ,arsR,arsB,arsC,BW25113_RS18155,BW25113_RS18160 |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | 360104 = | NA (NA) | 71 (0.910) | 29/160 | 0.8 | 45.8% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
? | NZ_CP009273 | = 360286 | 84 (1.070) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
* | ? | NZ_CP009273 | 1203246 = | 14 (0.180) | 57 (0.910) | 34/128 | 0.3 | 82.5% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
? | NZ_CP009273 | 1205075 = | 13 (0.210) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
* | ? | NZ_CP009273 | = 1203261 | 14 (0.180) | 26 (0.420) | 18/128 | 1.2 | 68.3% | coding (305/630 nt) | BW25113_RS05990 | hypothetical protein |
? | NZ_CP009273 | = 1205058 | 13 (0.210) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
* | ? | NZ_CP009273 | 1972818 = | 3 (0.040) | 92 (1.180) | 50/160 | 0.1 | 96.8% | intergenic (‑364/‑416) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
? | NZ_CP009273 | = 2096424 | NA (NA) | intergenic (‑68/+3) | BW25113_RS10605/wbbL | IS5‑like element IS5 family transposase/N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL | |||||
* | ? | NZ_CP009273 | = 1972821 | 2 (0.030) | 68 (0.870) | 36/160 | 0.5 | 97.1% | intergenic (‑367/‑413) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
? | NZ_CP009273 | 2095230 = | NA (NA) | pseudogene (1/354 nt) | wbbL | N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL | |||||
* | ? | NZ_CP009273 | 2282398 = | NA (NA) | 148 (1.890) | 56/160 | 0.1 | 100% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
? | NZ_CP009273 | = 3629062 | 0 (0.000) | coding (862/1053 nt) | yhiM | DUF2776 domain‑containing protein | |||||
* | ? | NZ_CP009273 | 4532499 = | 9 (0.120) | 73 (1.050) | 34/142 | 0.4 | 82.5% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
? | NZ_CP009273 | 4532813 = | 23 (0.330) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
* | ? | NZ_CP009273 | = 4532507 | 9 (0.120) | 69 (1.000) | 35/142 | 0.4 | 81.7% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
? | NZ_CP009273 | = 4532803 | 23 (0.330) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |