breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 49,765 C→T intergenic (+134/‑58) kefC → / → folA glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase
MC JC 2,399,465 Δ7 bp coding (650‑656/939 nt) lrhA ← transcriptional regulator LrhA
RA 3,754,231 G→T R127S (CGC→AGC)  selA ← L‑seryl‑tRNA(Sec) selenium transferase

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 29435 29445 11 3 [0] [1] 3 dapB/carA 4‑hydroxy‑tetrahydrodipicolinate reductase/glutamine‑hydrolyzing carbamoyl‑phosphate synthase small subunit
* * ÷ NZ_CP009273 90033 90051 19 2 [1] [1] 2 murE UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase
* * ÷ NZ_CP009273 356978 357575 598 2 [1] [0] 2 [lacA] [lacA]
* * ÷ NZ_CP009273 476517 476543 27 2 [1] [1] 2 tomB/acrB Hha toxicity modulator TomB/efflux RND transporter permease AcrB
* * ÷ NZ_CP009273 517748 517774 27 3 [1] [1] 2 ybbP ABC transporter permease
* * ÷ NZ_CP009273 531145 531163 19 2 [1] [1] 2 [gcl] [gcl]
* * ÷ NZ_CP009273 545487 545492 6 2 [0] [1] 3 ylbF DUF2877 domain‑containing protein
* * ÷ NZ_CP009273 548865 548906 42 2 [1] [1] 3 lpxH UDP‑2,3‑diacylglucosamine diphosphatase
* * ÷ NZ_CP009273 565859 565860 2 3 [0] [0] 3 ybcK recombinase family protein
* * ÷ NZ_CP009273 578977 579073 97 2 [1] [1] 2 BW25113_RS26085/appY tail fiber assembly protein/DNA‑binding transcriptional activator AppY
* * ÷ NZ_CP009273 699082 699103 22 2 [0] [1] 2 nagB/nagE glucosamine‑6‑phosphate deaminase/PTS N‑acetyl glucosamine transporter subunit IIABC
* * ÷ NZ_CP009273 711244 711257 14 2 [1] [1] 2 BW25113_RS03560 lipoprotein
* * ÷ NZ_CP009273 719516 719538 23 3 [1] [0] 2 kdpD two‑component system sensor histidine kinase KdpD
* * ÷ NZ_CP009273 732518 732518 1 3 [0] [0] 5 BW25113_RS03650 ISAs1 family transposase
* * ÷ NZ_CP009273 734934 734967 34 2 [0] [1] 2 [ybgA]–[phrB] [ybgA],[phrB]
* * ÷ NZ_CP009273 757383 757410 28 2 [0] [1] 2 odhB 2‑oxoglutarate dehydrogenase complex dihydrolipoyllysine‑residue succinyltransferase
* * ÷ NZ_CP009273 766259 766377 119 2 [1] [1] 2 mngB/cydA mannosylglycerate hydrolase/cytochrome ubiquinol oxidase subunit I
* * ÷ NZ_CP009273 771710 771737 28 3 [1] [0] 4 [tolR] [tolR]
* * ÷ NZ_CP009273 803236 803252 17 2 [1] [0] 2 ybhB kinase inhibitor
* * ÷ NZ_CP009273 879760 879768 9 2 [0] [1] 2 mdfA multidrug efflux MFS transporter MdfA
* * ÷ NZ_CP009273 902893 902902 10 2 [0] [1] 2 ybjT SDR family oxidoreductase
* * ÷ NZ_CP009273 905328 905340 13 3 [1] [1] 2 poxB ubiquinone‑dependent pyruvate dehydrogenase
* * ÷ NZ_CP009273 909243 909287 45 2 [1] [1] 2 [hcp] [hcp]
* * ÷ NZ_CP009273 912236 912280 45 2 [1] [1] 2 ybjD ATP‑dependent endonuclease
* * ÷ NZ_CP009273 962010 962037 28 2 [1] [1] 3 ycaI ComEC family protein
* * ÷ NZ_CP009273 974210 974230 21 2 [1] [1] 2 mukB chromosome partition protein MukB
* * ÷ NZ_CP009273 982913 983011 99 2 [0] [0] 2 ompF/asnS porin OmpF/asparagine‑‑tRNA ligase
* * ÷ NZ_CP009273 994335 994358 24 2 [1] [1] 2 elfD molecular chaperone
* * ÷ NZ_CP009273 1001933 1001960 28 2 [1] [1] 2 [zapC]–[ycbX] [zapC],[ycbX]
* * ÷ NZ_CP009273 1023519 1023579 61 3 [0] [1] 2 yccU CoA‑binding protein
* * ÷ NZ_CP009273 1054987 1055125 139 3 [1] [1] 3 torA trimethylamine‑N‑oxide reductase TorA
* * ÷ NZ_CP009273 1062694 1062727 34 2 [1] [1] 2 wrbA NAD(P)H:quinone oxidoreductase
* * ÷ NZ_CP009273 1074915 1074931 17 2 [0] [0] 5 putP sodium/proline symporter PutP
* * ÷ NZ_CP009273 1075696 1075734 39 2 [1] [1] 2 putP sodium/proline symporter PutP
* * ÷ NZ_CP009273 1097718 1097768 51 3 [1] [1] 2 csgE curli production assembly/transport protein CsgE
* * ÷ NZ_CP009273 1101678 1101695 18 2 [1] [0] 2 ymdB O‑acetyl‑ADP‑ribose deacetylase
* * ÷ NZ_CP009273 1102745 1102783 39 2 [1] [1] 2 clsC cardiolipin synthase ClsC
* * ÷ NZ_CP009273 1111447 1111493 47 3 [0] [0] 2 lpxL kdo(2)‑lipid IV(A) lauroyltransferase
* * ÷ NZ_CP009273 1114563 1114651 89 3 [1] [1] 2 yceJ/BW25113_RS05515 cytochrome b/YceO family protein
* * ÷ NZ_CP009273 1158166 1158210 45 3 [1] [1] 2 lpoB penicillin‑binding protein activator LpoB
* * ÷ NZ_CP009273 1160191 1160212 22 2 [1] [1] 2 nagZ beta‑N‑acetylhexosaminidase
* * ÷ NZ_CP009273 1161606 1161636 31 2 [1] [0] 2 ndh NADH‑quinone dehydrogenase
* * ÷ NZ_CP009273 1164353 1164457 105 2 [0] [1] 2 comR/bhsA TetR family copper‑responsive transcriptional repressor ComR/multiple stress resistance protein BhsA
* * ÷ NZ_CP009273 1170913 1170924 12 2 [0] [1] 2 lolC lipoprotein‑releasing ABC transporter permease subunit LolC
* * ÷ NZ_CP009273 1171617 1171644 28 2 [0] [1] 2 lolC lipoprotein‑releasing ABC transporter permease subunit LolC
* * ÷ NZ_CP009273 1172315 1172393 79 2 [0] [1] 2 lolD lipoprotein‑releasing ABC transporter ATP‑binding protein LolD
* * ÷ NZ_CP009273 1177890 1177903 14 2 [0] [1] 2 potD spermidine/putrescine ABC transporter substrate‑binding protein PotD
* * ÷ NZ_CP009273 1196198 1196213 16 2 [1] [1] 2 intE site‑specific integrase
* * ÷ NZ_CP009273 1205758 1205771 14 3 [1] [1] 2 pinE/mcrA site‑specific DNA recombinase/5‑methylcytosine‑specific endonuclease McrA
* * ÷ NZ_CP009273 1211807 1211825 19 2 [1] [1] 2 [ariR] [ariR]
* * ÷ NZ_CP009273 1225393 1225396 4 3 [1] [0] 2 hlyE hemolysin HlyE
* * ÷ NZ_CP009273 1231246 1231277 32 2 [1] [1] 3 ycgB SpoVR family protein
* * ÷ NZ_CP009273 1269388 1269414 27 2 [1] [1] 2 ychO inverse autotransporter invasin YchO
* * ÷ NZ_CP009273 1275369 1275403 35 2 [1] [0] 2 narG nitrate reductase subunit alpha
* * ÷ NZ_CP009273 1281042 1281050 9 2 [1] [0] 3 narJ nitrate reductase molybdenum cofactor assembly chaperone
* * ÷ NZ_CP009273 1287897 1287907 11 3 [0] [0] 2 galU/hns UTP‑‑glucose‑1‑phosphate uridylyltransferase GalU/DNA‑binding transcriptional regulator H‑NS
* * ÷ NZ_CP009273 1293385 1293444 60 3 [1] [0] 3 adhE bifunctional acetaldehyde‑CoA/alcohol dehydrogenase
* * ÷ NZ_CP009273 1343887 1343888 2 8 [0] [1] 2 yciW CMD domain‑containing protein
* * ÷ NZ_CP009273 1346695 1346740 46 2 [1] [1] 4 sapF peptide ABC transporter ATP‑binding protein SapF
* * ÷ NZ_CP009273 1381181 1381240 60 2 [1] [1] 2 tyrR transcriptional regulator TyrR
* * ÷ NZ_CP009273 1387332 1387388 57 2 [1] [1] 2 pgrR/mppA DNA‑binding transcriptional regulator PgrR/murein tripeptide ABC transporter substrate‑binding protein MppA
* * ÷ NZ_CP009273 1387479 1387489 11 2 [1] [1] 2 [mppA] [mppA]
* * ÷ NZ_CP009273 1392547 1392572 26 2 [1] [1] 2 uspE universal stress protein UspE
* * ÷ NZ_CP009273 1406905 1406958 54 2 [1] [1] 2 intR site‑specific integrase
* * ÷ NZ_CP009273 1407937 1407964 28 2 [1] [1] 2 rcbA double‑strand break reduction protein RcbA
* * ÷ NZ_CP009273 1413140 1413169 30 2 [1] [1] 2 sieB superinfection exclusion B family protein
* * ÷ NZ_CP009273 1449116 1449157 42 2 [1] [1] 3 [paaB] [paaB]
* * ÷ NZ_CP009273 1459394 1459429 36 2 [0] [1] 2 [BW25113_RS25580] [BW25113_RS25580]
* * ÷ NZ_CP009273 1499442 1499487 46 2 [1] [1] 2 ydcO BenE family transporter YdcO
* * ÷ NZ_CP009273 1505185 1505291 107 2 [1] [1] 2 ydcR PLP‑dependent aminotransferase family protein
* * ÷ NZ_CP009273 1508097 1508114 18 3 [1] [0] 2 ydcU ABC transporter permease
* * ÷ NZ_CP009273 1521384 1521481 98 2 [1] [1] 2 [yncH] [yncH]
* * ÷ NZ_CP009273 1540511 1540525 15 2 [0] [1] 2 yddL/yddG porin/aromatic amino acid efflux DMT transporter YddG
* * ÷ NZ_CP009273 1546303 1546396–1546309 7–94 2 [0] [1] 2 fdnI/yddM formate dehydrogenase‑N subunit gamma/HigA family addiction module antitoxin
* * ÷ NZ_CP009273 1560674 1560733 60 2 [1] [1] 3 dosC diguanylate cyclase DosC
* * ÷ NZ_CP009273 1566401 1566440 40 2 [1] [1] 2 gadB/pqqL glutamate decarboxylase/insulinase family protein
* * ÷ NZ_CP009273 1582701 1582717 17 3 [1] [1] 2 ydeS fimbrial protein
* * ÷ NZ_CP009273 1582859 1582907 49 2 [1] [1] 2 ydeS fimbrial protein
* * ÷ NZ_CP009273 1600884 1600917 34 2 [0] [1] 2 lsrF 3‑hydroxy‑5‑phosphonooxypentane‑2,4‑dione thiolase
* * ÷ NZ_CP009273 1601080 1601124 45 3 [1] [1] 2 lsrF 3‑hydroxy‑5‑phosphonooxypentane‑2,4‑dione thiolase
* * ÷ NZ_CP009273 1618428 1618486 59 2 [1] [1] 3 ydeI YdeI family stress tolerance OB fold protein
* * ÷ NZ_CP009273 1621495 1621566 72 2 [1] [1] 4 dcp peptidyl‑dipeptidase Dcp
* * ÷ NZ_CP009273 1622262 1622282 21 2 [1] [0] 2 ydfG bifunctional NADP‑dependent 3‑hydroxy acid dehydrogenase/3‑hydroxypropionate dehydrogenase YdfG
* * ÷ NZ_CP009273 1623212 1623299 88 2 [1] [1] 4 [ydfH] [ydfH]
* * ÷ NZ_CP009273 1630691 1630746 56 3 [1] [1] 2 nohA/ynfO DNA‑packaging protein/YlcI/YnfO family protein
* * ÷ NZ_CP009273 1632964 1633102 139 2 [1] [1] 2 cspI/rzpQ cold shock protein CspI/DUF2514 domain‑containing protein
* * ÷ NZ_CP009273 1633265 1633283 19 2 [0] [0] 2 cspI/rzpQ cold shock protein CspI/DUF2514 domain‑containing protein
* * ÷ NZ_CP009273 1633349 1633352 4 2 [0] [1] 2 rzpQ DUF2514 domain‑containing protein
* * ÷ NZ_CP009273 1635133 1635285 153 3 [1] [1] 7 [ynfU] [ynfU]
* * ÷ NZ_CP009273 1665435 1665494 60 3 [1] [1] 3 ynfM/asr MFS transporter/acid resistance repetitive basic protein Asr
* * ÷ NZ_CP009273 1666194 1666220 27 2 [1] [1] 2 [ydgD] [ydgD]
* * ÷ NZ_CP009273 1680635 1680720 86 3 [1] [1] 2 fumC class II fumarate hydratase
* * ÷ NZ_CP009273 1685482 1685514 33 3 [1] [0] 2 ydgA YdgA family protein
* * ÷ NZ_CP009273 1696038 1696085 48 2 [1] [1] 2 malY bifunctional maltose regulon transcriptional repressor/cystathionine beta‑lyase MalY
* * ÷ NZ_CP009273 1700492 1700564 73 3 [1] [1] 2 rsxA electron transport complex subunit RsxA
* * ÷ NZ_CP009273 1711454 1711521 68 2 [1] [1] 2 [tyrS] [tyrS]
* * ÷ NZ_CP009273 1718136 1718178 43 2 [1] [1] 2 ydhK FUSC family protein
* * ÷ NZ_CP009273 1720825 1720863 39 2 [0] [1] 2 nemR DNA‑binding transcriptional regulator NemR
* * ÷ NZ_CP009273 1727052 1727093 42 2 [1] [1] 2 lhr ATP‑dependent helicase
* * ÷ NZ_CP009273 1729011 1729038 28 2 [1] [1] 2 mepH peptidoglycan DD‑endopeptidase MepH
* * ÷ NZ_CP009273 1733845 1733958 114 2 [1] [1] 5 punR DNA‑binding transcriptional activator PunR
* * ÷ NZ_CP009273 1736967 1737022 56 3 [1] [1] 2 ribE riboflavin synthase
* * ÷ NZ_CP009273 1748926 1749100 175 2 [1] [1] 2 ydhY/fumD ferredoxin‑like protein/fumarate hydratase FumD
* * ÷ NZ_CP009273 1778507 1778532 26 4 [1] [0] 2 fadK medium‑chain fatty‑acid‑‑CoA ligase
* * ÷ NZ_CP009273 1778849 1778900 52 2 [1] [1] 2 fadK medium‑chain fatty‑acid‑‑CoA ligase
* * ÷ NZ_CP009273 1800450 1800529 80 2 [1] [0] 2 ydiY/pfkB YdiY family protein/6‑phosphofructokinase II
* * ÷ NZ_CP009273 1807441 1807462 22 2 [1] [0] 3 BW25113_RS09050/cedA hypothetical protein/cell division activator CedA
* * ÷ NZ_CP009273 1813416 1813438 23 2 [1] [1] 2 chbR transcriptional regulator ChbR
* * ÷ NZ_CP009273 1834606 1834611 6 6 [0] [1] 2 ynjE thiosulfate sulfurtransferase YnjE
* * ÷ NZ_CP009273 1835832 1835893 62 2 [1] [1] 2 nudG CTP pyrophosphohydrolase
* * ÷ NZ_CP009273 1854945 1854967 23 2 [0] [1] 2 ydjL zinc‑binding dehydrogenase
* * ÷ NZ_CP009273 1877179 1877199 21 2 [1] [1] 2 dmlA multifunctional D‑malate/3‑isopropylmalate/tartarate dehydrogenase
* * ÷ NZ_CP009273 1888048 1888125 78 2 [0] [1] 2 yoaB/yoaC RidA family protein/DUF1889 family protein
* * ÷ NZ_CP009273 1890266 1890292 27 2 [1] [1] 2 pabB aminodeoxychorismate synthase component 1
* * ÷ NZ_CP009273 1908468 1908507 40 2 [1] [1] 2 prc carboxy terminal‑processing peptidase
* * ÷ NZ_CP009273 1918769 1918838 70 2 [1] [1] 2 copD copper homeostasis membrane protein CopD
* * ÷ NZ_CP009273 1942229 1942296 68 8 [1] [1] 2 yebC YebC/PmpR family DNA‑binding transcriptional regulator
* * ÷ NZ_CP009273 1958997 1959011 15 2 [1] [1] 2 flhA flagellar biosynthesis protein FlhA
* * ÷ NZ_CP009273 1959111 1959140 30 2 [0] [1] 2 flhA flagellar biosynthesis protein FlhA
* * ÷ NZ_CP009273 1975003 1975057 55 2 [1] [0] 2 otsA alpha,alpha‑trehalose‑phosphate synthase
* * ÷ NZ_CP009273 1976821 1976866 46 2 [1] [0] 2 araH arabinose ABC transporter permease AraH
* * ÷ NZ_CP009273 1980238 1980256 19 2 [1] [1] 2 araF/ftnB arabinose ABC transporter substrate‑binding protein AraF/non‑heme ferritin‑like protein
* * ÷ NZ_CP009273 1981470 1981501 32 6 [0] [1] 2 azuC/yecR stress response protein AzuC/YecR‑like lipofamily protein
* * ÷ NZ_CP009273 1997263 1997289 27 2 [1] [1] 2 fliC/fliD H48 family flagellin FliC/flagellar filament capping protein FliD
* * ÷ NZ_CP009273 2004732 2004749 18 2 [1] [1] 2 BW25113_RS10120 DUF5503 domain‑containing protein
* * ÷ NZ_CP009273 2008756 2008804 49 2 [1] [1] 2 fliG flagellar motor switch protein FliG
* * ÷ NZ_CP009273 2010129 2010188 60 2 [1] [1] 2 fliI flagellar protein export ATPase FliI
* * ÷ NZ_CP009273 2011784 2011835 52 2 [1] [0] 2 fliJ flagellar export protein FliJ
* * ÷ NZ_CP009273 2011909 2011932 24 2 [0] [1] 2 fliK flagellar hook‑length control protein FliK
* * ÷ NZ_CP009273 2018493 2018512 20 2 [1] [1] 3 yodD peroxide/acid resistance protein YodD
* * ÷ NZ_CP009273 2026211 2026243 33 2 [1] [0] 2 yedJ phosphohydrolase
* * ÷ NZ_CP009273 2027057 2027092 36 3 [1] [1] 2 drpB/ompC cell division protein DrpB/porin OmpC
* * ÷ NZ_CP009273 2027317 2027387 71 2 [1] [0] 2 drpB/ompC cell division protein DrpB/porin OmpC
* * ÷ NZ_CP009273 2039702 2039768 67 2 [1] [1] 3 yeeJ inverse autotransporter adhesin YeeJ
* * ÷ NZ_CP009273 2041575 2041601 27 2 [1] [1] 2 yeeJ inverse autotransporter adhesin YeeJ
* * ÷ NZ_CP009273 2048729 2048813 85 2 [1] [1] 2 amn AMP nucleosidase
* * ÷ NZ_CP009273 2052997 2053036 40 2 [0] [1] 2 yeeO toxic metabolite efflux MATE transporter YeeO
* * ÷ NZ_CP009273 2062009 2062051 43 2 [1] [1] 3 BW25113_RS10415/BW25113_RS24005 IS5‑like element IS5 family transposase/TonB‑dependent receptor plug domain‑containing protein
* * ÷ NZ_CP009273 2078136 2078164 29 3 [1] [1] 3 yeeE thiosulfate utilization transporter TsuA/YeeE
* * ÷ NZ_CP009273 2097474 2097513 40 3 [1] [1] 2 wbbK glycosyltransferase family 1 protein
* * ÷ NZ_CP009273 2099613 2099698 86 2 [1] [1] 3 wzy O16 family O‑antigen polymerase
* * ÷ NZ_CP009273 2112211 2112240 30 2 [1] [1] 2 wzxC colanic acid undecaprenyl disphosphate flippase WzxC
* * ÷ NZ_CP009273 2121492 2121499 8 2 [0] [1] 2 gmd GDP‑mannose 4,6‑dehydratase
* * ÷ NZ_CP009273 2176593 2176650 58 2 [0] [1] 2 yegX glycoside hydrolase family 25 protein
* * ÷ NZ_CP009273 2192721 2192808 88 2 [1] [1] 2 BW25113_RS25680 WGR and DUF4132 domain‑containing protein
* * ÷ NZ_CP009273 2275452 2275488 37 2 [1] [1] 2 radD DEAD/DEAH box helicase
* * ÷ NZ_CP009273 2304239 2304260 22 2 [1] [1] 2 apbE FAD:protein FMN transferase ApbE
* * ÷ NZ_CP009273 2304714 2304716 3 2 [0] [0] 4 apbE FAD:protein FMN transferase ApbE
* * ÷ NZ_CP009273 2354346 2354355 10 2 [0] [1] 2 rhmD L‑rhamnonate dehydratase
* * ÷ NZ_CP009273 2371293 2371322 30 2 [1] [1] 2 menD 2‑succinyl‑5‑enolpyruvyl‑6‑hydroxy‑3‑ cyclohexene‑1‑carboxylic‑acid synthase
* * ÷ NZ_CP009273 2379339 2379375 37 2 [1] [1] 2 yfbL M28 family metallopeptidase
* * ÷ NZ_CP009273 2401689 2401693 5 2 [1] [0] 3 alaA alanine transaminase AlaA
* * ÷ NZ_CP009273 2408923 2408943 21 2 [1] [1] 2 pta phosphate acetyltransferase
* * ÷ NZ_CP009273 2456516 2456520 5 2 [0] [0] 3 BW25113_RS12235 hypothetical protein
* * ÷ NZ_CP009273 2462907 2463015 109 2 [1] [1] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2463136 2463175 40 2 [1] [1] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2463753 2463759 7 2 [1] [0] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2475269 2475279 11 3 [1] [1] 2 emrY multidrug efflux MFS transporter permease subunit EmrY
* * ÷ NZ_CP009273 2504090 2504117 28 2 [1] [0] 3 yfeO ion channel protein
* * ÷ NZ_CP009273 2557690 2557715 26 2 [1] [1] 4 BW25113_RS12770 hypothetical protein
* * ÷ NZ_CP009273 2599165 2599228 64 2 [0] [1] 2 hyfD hydrogenase 4 subunit HyfD
* * ÷ NZ_CP009273 2610998 2611020 23 2 [1] [1] 2 arsC arsenate reductase (glutaredoxin)
* * ÷ NZ_CP009273 2641691 2641712 22 2 [1] [1] 2 yfhM alpha2‑macroglobulin
* * ÷ NZ_CP009273 2673153 2673197 45 3 [1] [1] 3 yphG DUF5107 domain‑containing protein
* * ÷ NZ_CP009273 2685267 2685300 34 2 [1] [1] 2 purL phosphoribosylformylglycinamidine synthase
* * ÷ NZ_CP009273 2687898 2687966 69 2 [1] [1] 2 purL phosphoribosylformylglycinamidine synthase
* * ÷ NZ_CP009273 2707494 2707544 51 2 [1] [1] 2 srmB ATP‑dependent RNA helicase SrmB
* * ÷ NZ_CP009273 2710853 2710911 59 2 [1] [1] 2 yfiF tRNA/rRNA methyltransferase
* * ÷ NZ_CP009273 2764907 2764922 16 3 [1] [0] 2 BW25113_RS13755 hypothetical protein
* * ÷ NZ_CP009273 2768226 2768291 66 2 [1] [1] 2 BW25113_RS13770 hypothetical protein
* * ÷ NZ_CP009273 2777912 2777935 24 2 [1] [1] 2 BW25113_RS25705 DUF5507 domain‑containing protein
* * ÷ NZ_CP009273 2778101 2778137 37 2 [1] [1] 3 BW25113_RS25705 DUF5507 domain‑containing protein
* * ÷ NZ_CP009273 2778530 2778575 46 2 [1] [1] 2 BW25113_RS25705/BW25113_RS13825 DUF5507 domain‑containing protein/tRNA‑Ile
* * ÷ NZ_CP009273 2785465 2785503 39 2 [1] [1] 2 gabD NADP‑dependent succinate‑semialdehyde dehydrogenase
* * ÷ NZ_CP009273 2808277 2808283 7 2 [1] [0] 2 gshA glutamate‑‑cysteine ligase
* * ÷ NZ_CP009273 2832855 2832868 14 2 [1] [1] 2 ascG/ascF DNA‑binding transcriptional regulator AscG/PTS cellobiose/arbutin/salicin transporter subunit IIBC
* * ÷ NZ_CP009273 2897931 2897986 56 2 [1] [1] 2 ygcE/queE FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE
* * ÷ NZ_CP009273 3202126 3202157 32 3 [1] [0] 2 ttdT L‑tartrate/succinate antiporter
* * ÷ NZ_CP009273 3246076 3246180 105 2 [0] [1] 2 yhaH/yhaI DUF805 domain‑containing protein/DUF805 domain‑containing protein
* * ÷ NZ_CP009273 3354454 3354481 28 2 [1] [1] 3 gltD/gltF glutamate synthase subunit GltD/DUF1120 domain‑containing protein
* * ÷ NZ_CP009273 3387028 3387057 30 3 [1] [1] 4 yhdP AsmA2 domain‑containing protein YhdP
* * ÷ NZ_CP009273 3397102 3397141 40 2 [1] [1] 2 yhdH oxidoreductase
* * ÷ NZ_CP009273 3548791 3548812 22 3 [0] [1] 2 malT HTH‑type transcriptional regulator MalT
* * ÷ NZ_CP009273 4021411 4021435 25 3 [1] [1] 3 fadA acetyl‑CoA C‑acyltransferase FadA
* * ÷ NZ_CP009273 4532462 4532497 36 2 [1] [1] 3 fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 360104 =NA (NA)30 (2.500) 18/168 0.0 NA intergenic (‑35/+251) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
?NZ_CP009273 = 360286 NA (NA)intergenic (‑217/+69) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
* ? NZ_CP009273 = 1391494NA (NA)9 (0.760) 8/166 0.3 100% intergenic (+145/‑128) BW25113_RS06980/ynaJ IS5‑like element IS5 family transposase/DUF2534 family protein
?NZ_CP009273 1972747 = 0 (0.000)intergenic (‑293/‑487) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
* ? NZ_CP009273 = 19727510 (0.000)7 (0.580) 6/168 0.5 100% intergenic (‑297/‑483) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
?NZ_CP009273 = 2283592 NA (NA)intergenic (‑68/‑387) BW25113_RS11435/narP IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP
* ? NZ_CP009273 4532499 =3 (0.250)3 (0.280) 3/150 0.9 36.0% intergenic (+49/‑433) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
?NZ_CP009273 4532813 = 8 (0.750)intergenic (+363/‑119) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA