breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
RA | 49,765 | C→T | intergenic (+134/‑58) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
RA | 3,754,231 | G→T | R127S (CGC→AGC) | selA ← | L‑seryl‑tRNA(Sec) selenium transferase |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NZ_CP009273 | 29435 | 29445 | 11 | 3 [0] | [1] 3 | dapB/carA | 4‑hydroxy‑tetrahydrodipicolinate reductase/glutamine‑hydrolyzing carbamoyl‑phosphate synthase small subunit |
* | * | ÷ | NZ_CP009273 | 90033 | 90051 | 19 | 2 [1] | [1] 2 | murE | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase |
* | * | ÷ | NZ_CP009273 | 356978 | 357575 | 598 | 2 [1] | [0] 2 | [lacA] | [lacA] |
* | * | ÷ | NZ_CP009273 | 476517 | 476543 | 27 | 2 [1] | [1] 2 | tomB/acrB | Hha toxicity modulator TomB/efflux RND transporter permease AcrB |
* | * | ÷ | NZ_CP009273 | 517748 | 517774 | 27 | 3 [1] | [1] 2 | ybbP | ABC transporter permease |
* | * | ÷ | NZ_CP009273 | 531145 | 531163 | 19 | 2 [1] | [1] 2 | [gcl] | [gcl] |
* | * | ÷ | NZ_CP009273 | 545487 | 545492 | 6 | 2 [0] | [1] 3 | ylbF | DUF2877 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 548865 | 548906 | 42 | 2 [1] | [1] 3 | lpxH | UDP‑2,3‑diacylglucosamine diphosphatase |
* | * | ÷ | NZ_CP009273 | 565859 | 565860 | 2 | 3 [0] | [0] 3 | ybcK | recombinase family protein |
* | * | ÷ | NZ_CP009273 | 578977 | 579073 | 97 | 2 [1] | [1] 2 | BW25113_RS26085/appY | tail fiber assembly protein/DNA‑binding transcriptional activator AppY |
* | * | ÷ | NZ_CP009273 | 699082 | 699103 | 22 | 2 [0] | [1] 2 | nagB/nagE | glucosamine‑6‑phosphate deaminase/PTS N‑acetyl glucosamine transporter subunit IIABC |
* | * | ÷ | NZ_CP009273 | 711244 | 711257 | 14 | 2 [1] | [1] 2 | BW25113_RS03560 | lipoprotein |
* | * | ÷ | NZ_CP009273 | 719516 | 719538 | 23 | 3 [1] | [0] 2 | kdpD | two‑component system sensor histidine kinase KdpD |
* | * | ÷ | NZ_CP009273 | 732518 | 732518 | 1 | 3 [0] | [0] 5 | BW25113_RS03650 | ISAs1 family transposase |
* | * | ÷ | NZ_CP009273 | 734934 | 734967 | 34 | 2 [0] | [1] 2 | [ybgA]–[phrB] | [ybgA],[phrB] |
* | * | ÷ | NZ_CP009273 | 757383 | 757410 | 28 | 2 [0] | [1] 2 | odhB | 2‑oxoglutarate dehydrogenase complex dihydrolipoyllysine‑residue succinyltransferase |
* | * | ÷ | NZ_CP009273 | 766259 | 766377 | 119 | 2 [1] | [1] 2 | mngB/cydA | mannosylglycerate hydrolase/cytochrome ubiquinol oxidase subunit I |
* | * | ÷ | NZ_CP009273 | 771710 | 771737 | 28 | 3 [1] | [0] 4 | [tolR] | [tolR] |
* | * | ÷ | NZ_CP009273 | 803236 | 803252 | 17 | 2 [1] | [0] 2 | ybhB | kinase inhibitor |
* | * | ÷ | NZ_CP009273 | 879760 | 879768 | 9 | 2 [0] | [1] 2 | mdfA | multidrug efflux MFS transporter MdfA |
* | * | ÷ | NZ_CP009273 | 902893 | 902902 | 10 | 2 [0] | [1] 2 | ybjT | SDR family oxidoreductase |
* | * | ÷ | NZ_CP009273 | 905328 | 905340 | 13 | 3 [1] | [1] 2 | poxB | ubiquinone‑dependent pyruvate dehydrogenase |
* | * | ÷ | NZ_CP009273 | 909243 | 909287 | 45 | 2 [1] | [1] 2 | [hcp] | [hcp] |
* | * | ÷ | NZ_CP009273 | 912236 | 912280 | 45 | 2 [1] | [1] 2 | ybjD | ATP‑dependent endonuclease |
* | * | ÷ | NZ_CP009273 | 962010 | 962037 | 28 | 2 [1] | [1] 3 | ycaI | ComEC family protein |
* | * | ÷ | NZ_CP009273 | 974210 | 974230 | 21 | 2 [1] | [1] 2 | mukB | chromosome partition protein MukB |
* | * | ÷ | NZ_CP009273 | 982913 | 983011 | 99 | 2 [0] | [0] 2 | ompF/asnS | porin OmpF/asparagine‑‑tRNA ligase |
* | * | ÷ | NZ_CP009273 | 994335 | 994358 | 24 | 2 [1] | [1] 2 | elfD | molecular chaperone |
* | * | ÷ | NZ_CP009273 | 1001933 | 1001960 | 28 | 2 [1] | [1] 2 | [zapC]–[ycbX] | [zapC],[ycbX] |
* | * | ÷ | NZ_CP009273 | 1023519 | 1023579 | 61 | 3 [0] | [1] 2 | yccU | CoA‑binding protein |
* | * | ÷ | NZ_CP009273 | 1054987 | 1055125 | 139 | 3 [1] | [1] 3 | torA | trimethylamine‑N‑oxide reductase TorA |
* | * | ÷ | NZ_CP009273 | 1062694 | 1062727 | 34 | 2 [1] | [1] 2 | wrbA | NAD(P)H:quinone oxidoreductase |
* | * | ÷ | NZ_CP009273 | 1074915 | 1074931 | 17 | 2 [0] | [0] 5 | putP | sodium/proline symporter PutP |
* | * | ÷ | NZ_CP009273 | 1075696 | 1075734 | 39 | 2 [1] | [1] 2 | putP | sodium/proline symporter PutP |
* | * | ÷ | NZ_CP009273 | 1097718 | 1097768 | 51 | 3 [1] | [1] 2 | csgE | curli production assembly/transport protein CsgE |
* | * | ÷ | NZ_CP009273 | 1101678 | 1101695 | 18 | 2 [1] | [0] 2 | ymdB | O‑acetyl‑ADP‑ribose deacetylase |
* | * | ÷ | NZ_CP009273 | 1102745 | 1102783 | 39 | 2 [1] | [1] 2 | clsC | cardiolipin synthase ClsC |
* | * | ÷ | NZ_CP009273 | 1111447 | 1111493 | 47 | 3 [0] | [0] 2 | lpxL | kdo(2)‑lipid IV(A) lauroyltransferase |
* | * | ÷ | NZ_CP009273 | 1114563 | 1114651 | 89 | 3 [1] | [1] 2 | yceJ/BW25113_RS05515 | cytochrome b/YceO family protein |
* | * | ÷ | NZ_CP009273 | 1158166 | 1158210 | 45 | 3 [1] | [1] 2 | lpoB | penicillin‑binding protein activator LpoB |
* | * | ÷ | NZ_CP009273 | 1160191 | 1160212 | 22 | 2 [1] | [1] 2 | nagZ | beta‑N‑acetylhexosaminidase |
* | * | ÷ | NZ_CP009273 | 1161606 | 1161636 | 31 | 2 [1] | [0] 2 | ndh | NADH‑quinone dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1164353 | 1164457 | 105 | 2 [0] | [1] 2 | comR/bhsA | TetR family copper‑responsive transcriptional repressor ComR/multiple stress resistance protein BhsA |
* | * | ÷ | NZ_CP009273 | 1170913 | 1170924 | 12 | 2 [0] | [1] 2 | lolC | lipoprotein‑releasing ABC transporter permease subunit LolC |
* | * | ÷ | NZ_CP009273 | 1171617 | 1171644 | 28 | 2 [0] | [1] 2 | lolC | lipoprotein‑releasing ABC transporter permease subunit LolC |
* | * | ÷ | NZ_CP009273 | 1172315 | 1172393 | 79 | 2 [0] | [1] 2 | lolD | lipoprotein‑releasing ABC transporter ATP‑binding protein LolD |
* | * | ÷ | NZ_CP009273 | 1177890 | 1177903 | 14 | 2 [0] | [1] 2 | potD | spermidine/putrescine ABC transporter substrate‑binding protein PotD |
* | * | ÷ | NZ_CP009273 | 1196198 | 1196213 | 16 | 2 [1] | [1] 2 | intE | site‑specific integrase |
* | * | ÷ | NZ_CP009273 | 1205758 | 1205771 | 14 | 3 [1] | [1] 2 | pinE/mcrA | site‑specific DNA recombinase/5‑methylcytosine‑specific endonuclease McrA |
* | * | ÷ | NZ_CP009273 | 1211807 | 1211825 | 19 | 2 [1] | [1] 2 | [ariR] | [ariR] |
* | * | ÷ | NZ_CP009273 | 1225393 | 1225396 | 4 | 3 [1] | [0] 2 | hlyE | hemolysin HlyE |
* | * | ÷ | NZ_CP009273 | 1231246 | 1231277 | 32 | 2 [1] | [1] 3 | ycgB | SpoVR family protein |
* | * | ÷ | NZ_CP009273 | 1269388 | 1269414 | 27 | 2 [1] | [1] 2 | ychO | inverse autotransporter invasin YchO |
* | * | ÷ | NZ_CP009273 | 1275369 | 1275403 | 35 | 2 [1] | [0] 2 | narG | nitrate reductase subunit alpha |
* | * | ÷ | NZ_CP009273 | 1281042 | 1281050 | 9 | 2 [1] | [0] 3 | narJ | nitrate reductase molybdenum cofactor assembly chaperone |
* | * | ÷ | NZ_CP009273 | 1287897 | 1287907 | 11 | 3 [0] | [0] 2 | galU/hns | UTP‑‑glucose‑1‑phosphate uridylyltransferase GalU/DNA‑binding transcriptional regulator H‑NS |
* | * | ÷ | NZ_CP009273 | 1293385 | 1293444 | 60 | 3 [1] | [0] 3 | adhE | bifunctional acetaldehyde‑CoA/alcohol dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1343887 | 1343888 | 2 | 8 [0] | [1] 2 | yciW | CMD domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1346695 | 1346740 | 46 | 2 [1] | [1] 4 | sapF | peptide ABC transporter ATP‑binding protein SapF |
* | * | ÷ | NZ_CP009273 | 1381181 | 1381240 | 60 | 2 [1] | [1] 2 | tyrR | transcriptional regulator TyrR |
* | * | ÷ | NZ_CP009273 | 1387332 | 1387388 | 57 | 2 [1] | [1] 2 | pgrR/mppA | DNA‑binding transcriptional regulator PgrR/murein tripeptide ABC transporter substrate‑binding protein MppA |
* | * | ÷ | NZ_CP009273 | 1387479 | 1387489 | 11 | 2 [1] | [1] 2 | [mppA] | [mppA] |
* | * | ÷ | NZ_CP009273 | 1392547 | 1392572 | 26 | 2 [1] | [1] 2 | uspE | universal stress protein UspE |
* | * | ÷ | NZ_CP009273 | 1406905 | 1406958 | 54 | 2 [1] | [1] 2 | intR | site‑specific integrase |
* | * | ÷ | NZ_CP009273 | 1407937 | 1407964 | 28 | 2 [1] | [1] 2 | rcbA | double‑strand break reduction protein RcbA |
* | * | ÷ | NZ_CP009273 | 1413140 | 1413169 | 30 | 2 [1] | [1] 2 | sieB | superinfection exclusion B family protein |
* | * | ÷ | NZ_CP009273 | 1449116 | 1449157 | 42 | 2 [1] | [1] 3 | [paaB] | [paaB] |
* | * | ÷ | NZ_CP009273 | 1459394 | 1459429 | 36 | 2 [0] | [1] 2 | [BW25113_RS25580] | [BW25113_RS25580] |
* | * | ÷ | NZ_CP009273 | 1499442 | 1499487 | 46 | 2 [1] | [1] 2 | ydcO | BenE family transporter YdcO |
* | * | ÷ | NZ_CP009273 | 1505185 | 1505291 | 107 | 2 [1] | [1] 2 | ydcR | PLP‑dependent aminotransferase family protein |
* | * | ÷ | NZ_CP009273 | 1508097 | 1508114 | 18 | 3 [1] | [0] 2 | ydcU | ABC transporter permease |
* | * | ÷ | NZ_CP009273 | 1521384 | 1521481 | 98 | 2 [1] | [1] 2 | [yncH] | [yncH] |
* | * | ÷ | NZ_CP009273 | 1540511 | 1540525 | 15 | 2 [0] | [1] 2 | yddL/yddG | porin/aromatic amino acid efflux DMT transporter YddG |
* | * | ÷ | NZ_CP009273 | 1546303 | 1546396–1546309 | 7–94 | 2 [0] | [1] 2 | fdnI/yddM | formate dehydrogenase‑N subunit gamma/HigA family addiction module antitoxin |
* | * | ÷ | NZ_CP009273 | 1560674 | 1560733 | 60 | 2 [1] | [1] 3 | dosC | diguanylate cyclase DosC |
* | * | ÷ | NZ_CP009273 | 1566401 | 1566440 | 40 | 2 [1] | [1] 2 | gadB/pqqL | glutamate decarboxylase/insulinase family protein |
* | * | ÷ | NZ_CP009273 | 1582701 | 1582717 | 17 | 3 [1] | [1] 2 | ydeS | fimbrial protein |
* | * | ÷ | NZ_CP009273 | 1582859 | 1582907 | 49 | 2 [1] | [1] 2 | ydeS | fimbrial protein |
* | * | ÷ | NZ_CP009273 | 1600884 | 1600917 | 34 | 2 [0] | [1] 2 | lsrF | 3‑hydroxy‑5‑phosphonooxypentane‑2,4‑dione thiolase |
* | * | ÷ | NZ_CP009273 | 1601080 | 1601124 | 45 | 3 [1] | [1] 2 | lsrF | 3‑hydroxy‑5‑phosphonooxypentane‑2,4‑dione thiolase |
* | * | ÷ | NZ_CP009273 | 1618428 | 1618486 | 59 | 2 [1] | [1] 3 | ydeI | YdeI family stress tolerance OB fold protein |
* | * | ÷ | NZ_CP009273 | 1621495 | 1621566 | 72 | 2 [1] | [1] 4 | dcp | peptidyl‑dipeptidase Dcp |
* | * | ÷ | NZ_CP009273 | 1622262 | 1622282 | 21 | 2 [1] | [0] 2 | ydfG | bifunctional NADP‑dependent 3‑hydroxy acid dehydrogenase/3‑hydroxypropionate dehydrogenase YdfG |
* | * | ÷ | NZ_CP009273 | 1623212 | 1623299 | 88 | 2 [1] | [1] 4 | [ydfH] | [ydfH] |
* | * | ÷ | NZ_CP009273 | 1630691 | 1630746 | 56 | 3 [1] | [1] 2 | nohA/ynfO | DNA‑packaging protein/YlcI/YnfO family protein |
* | * | ÷ | NZ_CP009273 | 1632964 | 1633102 | 139 | 2 [1] | [1] 2 | cspI/rzpQ | cold shock protein CspI/DUF2514 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1633265 | 1633283 | 19 | 2 [0] | [0] 2 | cspI/rzpQ | cold shock protein CspI/DUF2514 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1633349 | 1633352 | 4 | 2 [0] | [1] 2 | rzpQ | DUF2514 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1635133 | 1635285 | 153 | 3 [1] | [1] 7 | [ynfU] | [ynfU] |
* | * | ÷ | NZ_CP009273 | 1665435 | 1665494 | 60 | 3 [1] | [1] 3 | ynfM/asr | MFS transporter/acid resistance repetitive basic protein Asr |
* | * | ÷ | NZ_CP009273 | 1666194 | 1666220 | 27 | 2 [1] | [1] 2 | [ydgD] | [ydgD] |
* | * | ÷ | NZ_CP009273 | 1680635 | 1680720 | 86 | 3 [1] | [1] 2 | fumC | class II fumarate hydratase |
* | * | ÷ | NZ_CP009273 | 1685482 | 1685514 | 33 | 3 [1] | [0] 2 | ydgA | YdgA family protein |
* | * | ÷ | NZ_CP009273 | 1696038 | 1696085 | 48 | 2 [1] | [1] 2 | malY | bifunctional maltose regulon transcriptional repressor/cystathionine beta‑lyase MalY |
* | * | ÷ | NZ_CP009273 | 1700492 | 1700564 | 73 | 3 [1] | [1] 2 | rsxA | electron transport complex subunit RsxA |
* | * | ÷ | NZ_CP009273 | 1711454 | 1711521 | 68 | 2 [1] | [1] 2 | [tyrS] | [tyrS] |
* | * | ÷ | NZ_CP009273 | 1718136 | 1718178 | 43 | 2 [1] | [1] 2 | ydhK | FUSC family protein |
* | * | ÷ | NZ_CP009273 | 1720825 | 1720863 | 39 | 2 [0] | [1] 2 | nemR | DNA‑binding transcriptional regulator NemR |
* | * | ÷ | NZ_CP009273 | 1727052 | 1727093 | 42 | 2 [1] | [1] 2 | lhr | ATP‑dependent helicase |
* | * | ÷ | NZ_CP009273 | 1729011 | 1729038 | 28 | 2 [1] | [1] 2 | mepH | peptidoglycan DD‑endopeptidase MepH |
* | * | ÷ | NZ_CP009273 | 1733845 | 1733958 | 114 | 2 [1] | [1] 5 | punR | DNA‑binding transcriptional activator PunR |
* | * | ÷ | NZ_CP009273 | 1736967 | 1737022 | 56 | 3 [1] | [1] 2 | ribE | riboflavin synthase |
* | * | ÷ | NZ_CP009273 | 1748926 | 1749100 | 175 | 2 [1] | [1] 2 | ydhY/fumD | ferredoxin‑like protein/fumarate hydratase FumD |
* | * | ÷ | NZ_CP009273 | 1778507 | 1778532 | 26 | 4 [1] | [0] 2 | fadK | medium‑chain fatty‑acid‑‑CoA ligase |
* | * | ÷ | NZ_CP009273 | 1778849 | 1778900 | 52 | 2 [1] | [1] 2 | fadK | medium‑chain fatty‑acid‑‑CoA ligase |
* | * | ÷ | NZ_CP009273 | 1800450 | 1800529 | 80 | 2 [1] | [0] 2 | ydiY/pfkB | YdiY family protein/6‑phosphofructokinase II |
* | * | ÷ | NZ_CP009273 | 1807441 | 1807462 | 22 | 2 [1] | [0] 3 | BW25113_RS09050/cedA | hypothetical protein/cell division activator CedA |
* | * | ÷ | NZ_CP009273 | 1813416 | 1813438 | 23 | 2 [1] | [1] 2 | chbR | transcriptional regulator ChbR |
* | * | ÷ | NZ_CP009273 | 1834606 | 1834611 | 6 | 6 [0] | [1] 2 | ynjE | thiosulfate sulfurtransferase YnjE |
* | * | ÷ | NZ_CP009273 | 1835832 | 1835893 | 62 | 2 [1] | [1] 2 | nudG | CTP pyrophosphohydrolase |
* | * | ÷ | NZ_CP009273 | 1854945 | 1854967 | 23 | 2 [0] | [1] 2 | ydjL | zinc‑binding dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1877179 | 1877199 | 21 | 2 [1] | [1] 2 | dmlA | multifunctional D‑malate/3‑isopropylmalate/tartarate dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1888048 | 1888125 | 78 | 2 [0] | [1] 2 | yoaB/yoaC | RidA family protein/DUF1889 family protein |
* | * | ÷ | NZ_CP009273 | 1890266 | 1890292 | 27 | 2 [1] | [1] 2 | pabB | aminodeoxychorismate synthase component 1 |
* | * | ÷ | NZ_CP009273 | 1908468 | 1908507 | 40 | 2 [1] | [1] 2 | prc | carboxy terminal‑processing peptidase |
* | * | ÷ | NZ_CP009273 | 1918769 | 1918838 | 70 | 2 [1] | [1] 2 | copD | copper homeostasis membrane protein CopD |
* | * | ÷ | NZ_CP009273 | 1942229 | 1942296 | 68 | 8 [1] | [1] 2 | yebC | YebC/PmpR family DNA‑binding transcriptional regulator |
* | * | ÷ | NZ_CP009273 | 1958997 | 1959011 | 15 | 2 [1] | [1] 2 | flhA | flagellar biosynthesis protein FlhA |
* | * | ÷ | NZ_CP009273 | 1959111 | 1959140 | 30 | 2 [0] | [1] 2 | flhA | flagellar biosynthesis protein FlhA |
* | * | ÷ | NZ_CP009273 | 1975003 | 1975057 | 55 | 2 [1] | [0] 2 | otsA | alpha,alpha‑trehalose‑phosphate synthase |
* | * | ÷ | NZ_CP009273 | 1976821 | 1976866 | 46 | 2 [1] | [0] 2 | araH | arabinose ABC transporter permease AraH |
* | * | ÷ | NZ_CP009273 | 1980238 | 1980256 | 19 | 2 [1] | [1] 2 | araF/ftnB | arabinose ABC transporter substrate‑binding protein AraF/non‑heme ferritin‑like protein |
* | * | ÷ | NZ_CP009273 | 1981470 | 1981501 | 32 | 6 [0] | [1] 2 | azuC/yecR | stress response protein AzuC/YecR‑like lipofamily protein |
* | * | ÷ | NZ_CP009273 | 1997263 | 1997289 | 27 | 2 [1] | [1] 2 | fliC/fliD | H48 family flagellin FliC/flagellar filament capping protein FliD |
* | * | ÷ | NZ_CP009273 | 2004732 | 2004749 | 18 | 2 [1] | [1] 2 | BW25113_RS10120 | DUF5503 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 2008756 | 2008804 | 49 | 2 [1] | [1] 2 | fliG | flagellar motor switch protein FliG |
* | * | ÷ | NZ_CP009273 | 2010129 | 2010188 | 60 | 2 [1] | [1] 2 | fliI | flagellar protein export ATPase FliI |
* | * | ÷ | NZ_CP009273 | 2011784 | 2011835 | 52 | 2 [1] | [0] 2 | fliJ | flagellar export protein FliJ |
* | * | ÷ | NZ_CP009273 | 2011909 | 2011932 | 24 | 2 [0] | [1] 2 | fliK | flagellar hook‑length control protein FliK |
* | * | ÷ | NZ_CP009273 | 2018493 | 2018512 | 20 | 2 [1] | [1] 3 | yodD | peroxide/acid resistance protein YodD |
* | * | ÷ | NZ_CP009273 | 2026211 | 2026243 | 33 | 2 [1] | [0] 2 | yedJ | phosphohydrolase |
* | * | ÷ | NZ_CP009273 | 2027057 | 2027092 | 36 | 3 [1] | [1] 2 | drpB/ompC | cell division protein DrpB/porin OmpC |
* | * | ÷ | NZ_CP009273 | 2027317 | 2027387 | 71 | 2 [1] | [0] 2 | drpB/ompC | cell division protein DrpB/porin OmpC |
* | * | ÷ | NZ_CP009273 | 2039702 | 2039768 | 67 | 2 [1] | [1] 3 | yeeJ | inverse autotransporter adhesin YeeJ |
* | * | ÷ | NZ_CP009273 | 2041575 | 2041601 | 27 | 2 [1] | [1] 2 | yeeJ | inverse autotransporter adhesin YeeJ |
* | * | ÷ | NZ_CP009273 | 2048729 | 2048813 | 85 | 2 [1] | [1] 2 | amn | AMP nucleosidase |
* | * | ÷ | NZ_CP009273 | 2052997 | 2053036 | 40 | 2 [0] | [1] 2 | yeeO | toxic metabolite efflux MATE transporter YeeO |
* | * | ÷ | NZ_CP009273 | 2062009 | 2062051 | 43 | 2 [1] | [1] 3 | BW25113_RS10415/BW25113_RS24005 | IS5‑like element IS5 family transposase/TonB‑dependent receptor plug domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 2078136 | 2078164 | 29 | 3 [1] | [1] 3 | yeeE | thiosulfate utilization transporter TsuA/YeeE |
* | * | ÷ | NZ_CP009273 | 2097474 | 2097513 | 40 | 3 [1] | [1] 2 | wbbK | glycosyltransferase family 1 protein |
* | * | ÷ | NZ_CP009273 | 2099613 | 2099698 | 86 | 2 [1] | [1] 3 | wzy | O16 family O‑antigen polymerase |
* | * | ÷ | NZ_CP009273 | 2112211 | 2112240 | 30 | 2 [1] | [1] 2 | wzxC | colanic acid undecaprenyl disphosphate flippase WzxC |
* | * | ÷ | NZ_CP009273 | 2121492 | 2121499 | 8 | 2 [0] | [1] 2 | gmd | GDP‑mannose 4,6‑dehydratase |
* | * | ÷ | NZ_CP009273 | 2176593 | 2176650 | 58 | 2 [0] | [1] 2 | yegX | glycoside hydrolase family 25 protein |
* | * | ÷ | NZ_CP009273 | 2192721 | 2192808 | 88 | 2 [1] | [1] 2 | BW25113_RS25680 | WGR and DUF4132 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 2275452 | 2275488 | 37 | 2 [1] | [1] 2 | radD | DEAD/DEAH box helicase |
* | * | ÷ | NZ_CP009273 | 2304239 | 2304260 | 22 | 2 [1] | [1] 2 | apbE | FAD:protein FMN transferase ApbE |
* | * | ÷ | NZ_CP009273 | 2304714 | 2304716 | 3 | 2 [0] | [0] 4 | apbE | FAD:protein FMN transferase ApbE |
* | * | ÷ | NZ_CP009273 | 2354346 | 2354355 | 10 | 2 [0] | [1] 2 | rhmD | L‑rhamnonate dehydratase |
* | * | ÷ | NZ_CP009273 | 2371293 | 2371322 | 30 | 2 [1] | [1] 2 | menD | 2‑succinyl‑5‑enolpyruvyl‑6‑hydroxy‑3‑ cyclohexene‑1‑carboxylic‑acid synthase |
* | * | ÷ | NZ_CP009273 | 2379339 | 2379375 | 37 | 2 [1] | [1] 2 | yfbL | M28 family metallopeptidase |
* | * | ÷ | NZ_CP009273 | 2401689 | 2401693 | 5 | 2 [1] | [0] 3 | alaA | alanine transaminase AlaA |
* | * | ÷ | NZ_CP009273 | 2408923 | 2408943 | 21 | 2 [1] | [1] 2 | pta | phosphate acetyltransferase |
* | * | ÷ | NZ_CP009273 | 2456516 | 2456520 | 5 | 2 [0] | [0] 3 | BW25113_RS12235 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2462907 | 2463015 | 109 | 2 [1] | [1] 2 | BW25113_RS12270 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2463136 | 2463175 | 40 | 2 [1] | [1] 2 | BW25113_RS12270 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2463753 | 2463759 | 7 | 2 [1] | [0] 2 | BW25113_RS12270 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2475269 | 2475279 | 11 | 3 [1] | [1] 2 | emrY | multidrug efflux MFS transporter permease subunit EmrY |
* | * | ÷ | NZ_CP009273 | 2504090 | 2504117 | 28 | 2 [1] | [0] 3 | yfeO | ion channel protein |
* | * | ÷ | NZ_CP009273 | 2557690 | 2557715 | 26 | 2 [1] | [1] 4 | BW25113_RS12770 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2599165 | 2599228 | 64 | 2 [0] | [1] 2 | hyfD | hydrogenase 4 subunit HyfD |
* | * | ÷ | NZ_CP009273 | 2610998 | 2611020 | 23 | 2 [1] | [1] 2 | arsC | arsenate reductase (glutaredoxin) |
* | * | ÷ | NZ_CP009273 | 2641691 | 2641712 | 22 | 2 [1] | [1] 2 | yfhM | alpha2‑macroglobulin |
* | * | ÷ | NZ_CP009273 | 2673153 | 2673197 | 45 | 3 [1] | [1] 3 | yphG | DUF5107 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 2685267 | 2685300 | 34 | 2 [1] | [1] 2 | purL | phosphoribosylformylglycinamidine synthase |
* | * | ÷ | NZ_CP009273 | 2687898 | 2687966 | 69 | 2 [1] | [1] 2 | purL | phosphoribosylformylglycinamidine synthase |
* | * | ÷ | NZ_CP009273 | 2707494 | 2707544 | 51 | 2 [1] | [1] 2 | srmB | ATP‑dependent RNA helicase SrmB |
* | * | ÷ | NZ_CP009273 | 2710853 | 2710911 | 59 | 2 [1] | [1] 2 | yfiF | tRNA/rRNA methyltransferase |
* | * | ÷ | NZ_CP009273 | 2764907 | 2764922 | 16 | 3 [1] | [0] 2 | BW25113_RS13755 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2768226 | 2768291 | 66 | 2 [1] | [1] 2 | BW25113_RS13770 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2777912 | 2777935 | 24 | 2 [1] | [1] 2 | BW25113_RS25705 | DUF5507 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 2778101 | 2778137 | 37 | 2 [1] | [1] 3 | BW25113_RS25705 | DUF5507 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 2778530 | 2778575 | 46 | 2 [1] | [1] 2 | BW25113_RS25705/BW25113_RS13825 | DUF5507 domain‑containing protein/tRNA‑Ile |
* | * | ÷ | NZ_CP009273 | 2785465 | 2785503 | 39 | 2 [1] | [1] 2 | gabD | NADP‑dependent succinate‑semialdehyde dehydrogenase |
* | * | ÷ | NZ_CP009273 | 2808277 | 2808283 | 7 | 2 [1] | [0] 2 | gshA | glutamate‑‑cysteine ligase |
* | * | ÷ | NZ_CP009273 | 2832855 | 2832868 | 14 | 2 [1] | [1] 2 | ascG/ascF | DNA‑binding transcriptional regulator AscG/PTS cellobiose/arbutin/salicin transporter subunit IIBC |
* | * | ÷ | NZ_CP009273 | 2897931 | 2897986 | 56 | 2 [1] | [1] 2 | ygcE/queE | FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE |
* | * | ÷ | NZ_CP009273 | 3202126 | 3202157 | 32 | 3 [1] | [0] 2 | ttdT | L‑tartrate/succinate antiporter |
* | * | ÷ | NZ_CP009273 | 3246076 | 3246180 | 105 | 2 [0] | [1] 2 | yhaH/yhaI | DUF805 domain‑containing protein/DUF805 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 3354454 | 3354481 | 28 | 2 [1] | [1] 3 | gltD/gltF | glutamate synthase subunit GltD/DUF1120 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 3387028 | 3387057 | 30 | 3 [1] | [1] 4 | yhdP | AsmA2 domain‑containing protein YhdP |
* | * | ÷ | NZ_CP009273 | 3397102 | 3397141 | 40 | 2 [1] | [1] 2 | yhdH | oxidoreductase |
* | * | ÷ | NZ_CP009273 | 3548791 | 3548812 | 22 | 3 [0] | [1] 2 | malT | HTH‑type transcriptional regulator MalT |
* | * | ÷ | NZ_CP009273 | 4021411 | 4021435 | 25 | 3 [1] | [1] 3 | fadA | acetyl‑CoA C‑acyltransferase FadA |
* | * | ÷ | NZ_CP009273 | 4532462 | 4532497 | 36 | 2 [1] | [1] 3 | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | 360104 = | NA (NA) | 30 (2.500) | 18/168 | 0.0 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
* | ? | NZ_CP009273 | = 1391494 | NA (NA) | 9 (0.760) | 8/166 | 0.3 | 100% | intergenic (+145/‑128) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
? | NZ_CP009273 | 1972747 = | 0 (0.000) | intergenic (‑293/‑487) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC | |||||
* | ? | NZ_CP009273 | = 1972751 | 0 (0.000) | 7 (0.580) | 6/168 | 0.5 | 100% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
* | ? | NZ_CP009273 | 4532499 = | 3 (0.250) | 3 (0.280) | 3/150 | 0.9 | 36.0% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
? | NZ_CP009273 | 4532813 = | 8 (0.750) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |