breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
RA | 49,791 | G→A | intergenic (+160/‑32) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NZ_CP009273 | 279395 | 279420 | 26 | 2 [1] | [1] 3 | yagF | xylonate dehydratase YagF |
* | * | ÷ | NZ_CP009273 | 295809 | 295821 | 13 | 2 [1] | [1] 2 | paoC | aldehyde oxidoreductase molybdenum‑binding subunit PaoC |
* | * | ÷ | NZ_CP009273 | 308826 | 308847 | 22 | 2 [1] | [1] 2 | ykgM/BW25113_RS01530 | type B 50S ribosomal protein L31/hypothetical protein |
* | * | ÷ | NZ_CP009273 | 356981 | 357572 | 592 | 2 [0] | [1] 2 | [lacA] | [lacA] |
* | * | ÷ | NZ_CP009273 | 519347 | 519370 | 24 | 2 [1] | [0] 2 | rhsD | rhs element protein RhsD |
* | * | ÷ | NZ_CP009273 | 564711 | 564723 | 13 | 3 [1] | [1] 3 | ybcK | recombinase family protein |
* | * | ÷ | NZ_CP009273 | 578982 | 579058 | 77 | 2 [1] | [1] 2 | BW25113_RS26085/appY | tail fiber assembly protein/DNA‑binding transcriptional activator AppY |
* | * | ÷ | NZ_CP009273 | 591371 | 591418 | 48 | 2 [1] | [0] 2 | cusC | Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC |
* | * | ÷ | NZ_CP009273 | 610360 | 610415 | 56 | 2 [1] | [0] 2 | entF | enterobactin non‑ribosomal peptide synthetase EntF |
* | * | ÷ | NZ_CP009273 | 647564 | 647654 | 91 | 2 [1] | [1] 3 | citC/dpiB | [citrate (pro‑3S)‑lyase] ligase/sensor histidine kinase DpiB |
* | * | ÷ | NZ_CP009273 | 702617 | 702651 | 35 | 2 [1] | [1] 2 | glnS | glutamine‑‑tRNA ligase |
* | * | ÷ | NZ_CP009273 | 726185 | 726202 | 18 | 2 [0] | [1] 2 | rhsC | rhs element protein RhsC |
* | * | ÷ | NZ_CP009273 | 766349 | 766387 | 39 | 2 [1] | [1] 3 | mngB/cydA | mannosylglycerate hydrolase/cytochrome ubiquinol oxidase subunit I |
* | * | ÷ | NZ_CP009273 | 774484 | 774515 | 32 | 2 [1] | [1] 2 | [tolB] | [tolB] |
* | * | ÷ | NZ_CP009273 | 796134 | 796140 | 7 | 2 [0] | [1] 2 | ybhD/ybhH | LysR family transcriptional regulator/4‑oxalomesaconate tautomerase |
* | * | ÷ | NZ_CP009273 | 864029 | 864089 | 61 | 2 [1] | [1] 2 | gsiA | glutathione ABC transporter ATP‑binding protein GsiA |
* | * | ÷ | NZ_CP009273 | 868736 | 868743 | 8 | 2 [1] | [0] 2 | pdeI | EAL domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 902978 | 903106 | 129 | 2 [0] | [1] 3 | ybjT | SDR family oxidoreductase |
* | * | ÷ | NZ_CP009273 | 906117 | 906157 | 41 | 2 [0] | [1] 2 | poxB | ubiquinone‑dependent pyruvate dehydrogenase |
* | * | ÷ | NZ_CP009273 | 972868 | 972933 | 66 | 3 [1] | [1] 2 | mukB | chromosome partition protein MukB |
* | * | ÷ | NZ_CP009273 | 976627 | 976703 | 77 | 2 [0] | [1] 2 | ldtD | L,D‑transpeptidase |
* | * | ÷ | NZ_CP009273 | 982414 | 982446 | 33 | 4 [1] | [1] 2 | [ompF] | [ompF] |
* | * | ÷ | NZ_CP009273 | 982717 | 982728 | 12 | 2 [1] | [1] 4 | ompF/asnS | porin OmpF/asparagine‑‑tRNA ligase |
* | * | ÷ | NZ_CP009273 | 984185 | 984199 | 15 | 2 [1] | [1] 3 | asnS | asparagine‑‑tRNA ligase |
* | * | ÷ | NZ_CP009273 | 1028596 | 1028618 | 23 | 2 [1] | [1] 2 | hyaA | hydrogenase 1 small subunit |
* | * | ÷ | NZ_CP009273 | 1028744 | 1028781 | 38 | 2 [1] | [1] 2 | hyaB | Ni/Fe‑hydrogenase large subunit |
* | * | ÷ | NZ_CP009273 | 1042596 | 1042636 | 41 | 2 [1] | [1] 2 | gfcD | YjbH domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1080339 | 1080369 | 31 | 2 [1] | [1] 2 | efeB/phoH | iron uptake transporter deferrochelatase/peroxidase subunit/phosphate starvation‑inducible protein PhoH |
* | * | ÷ | NZ_CP009273 | 1099976 | 1100002 | 27 | 3 [0] | [1] 2 | csgA | curli major subunit CsgA |
* | * | ÷ | NZ_CP009273 | 1116630 | 1116666 | 37 | 2 [1] | [1] 2 | bssS/dinI | biofilm formation regulator BssS/DNA damage‑inducible protein I |
* | * | ÷ | NZ_CP009273 | 1118965 | 1118985 | 21 | 2 [1] | [0] 2 | grxB | glutaredoxin 2 |
* | * | ÷ | NZ_CP009273 | 1137471 | 1137517 | 47 | 2 [1] | [1] 2 | rne | ribonuclease E |
* | * | ÷ | NZ_CP009273 | 1137612 | 1137770 | 159 | 2 [1] | [1] 2 | rne | ribonuclease E |
* | * | ÷ | NZ_CP009273 | 1138167 | 1138243 | 77 | 3 [0] | [1] 2 | rne | ribonuclease E |
* | * | ÷ | NZ_CP009273 | 1144286 | 1144306 | 21 | 3 [1] | [1] 3 | fabH | beta‑ketoacyl‑ACP synthase III |
* | * | ÷ | NZ_CP009273 | 1161491 | 1161515 | 25 | 2 [0] | [1] 2 | ycfP/ndh | alpha/beta hydrolase YcfP/NADH‑quinone dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1169589 | 1169652 | 64 | 2 [1] | [1] 3 | ycfT | acyltransferase family protein |
* | * | ÷ | NZ_CP009273 | 1193713 | 1193723 | 11 | 3 [0] | [1] 2 | BW25113_RS05920/lit | hypothetical protein/cell death peptidase Lit |
* | * | ÷ | NZ_CP009273 | 1201158 | 1201172 | 15 | 2 [1] | [1] 2 | BW25113_RS05970 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 1206611 | 1206673 | 63 | 2 [0] | [1] 2 | [mcrA] | [mcrA] |
* | * | ÷ | NZ_CP009273 | 1207096 | 1207128 | 33 | 2 [1] | [1] 2 | BW25113_RS23640/iraM | isocitrate/isopropylmalate family dehydrogenase/anti‑adapter protein IraM |
* | * | ÷ | NZ_CP009273 | 1225994 | 1226066 | 73 | 3 [0] | [1] 2 | hlyE/umuD | hemolysin HlyE/translesion error‑prone DNA polymerase V autoproteolytic subunit |
* | * | ÷ | NZ_CP009273 | 1276823 | 1276838 | 16 | 2 [0] | [1] 3 | narG | nitrate reductase subunit alpha |
* | * | ÷ | NZ_CP009273 | 1280467 | 1280492 | 26 | 2 [0] | [1] 2 | narH | nitrate reductase subunit beta |
* | * | ÷ | NZ_CP009273 | 1315184 | 1315230 | 47 | 2 [1] | [0] 2 | trpD | bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD |
* | * | ÷ | NZ_CP009273 | 1329663 | 1329681 | 19 | 2 [1] | [1] 2 | BW25113_RS06660 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 1335177 | 1335186 | 10 | 2 [0] | [1] 2 | lapB | lipopolysaccharide assembly protein LapB |
* | * | ÷ | NZ_CP009273 | 1353936 | 1353944 | 9 | 2 [1] | [1] 2 | puuA | glutamate‑putrescine ligase |
* | * | ÷ | NZ_CP009273 | 1366563 | 1366584 | 22 | 2 [1] | [1] 2 | ycjN | ABC transporter substrate‑binding protein |
* | * | ÷ | NZ_CP009273 | 1366671 | 1366744 | 74 | 2 [1] | [1] 2 | ycjN | ABC transporter substrate‑binding protein |
* | * | ÷ | NZ_CP009273 | 1371763 | 1371816 | 54 | 2 [1] | [1] 2 | ycjS | Gfo/Idh/MocA family oxidoreductase |
* | * | ÷ | NZ_CP009273 | 1372296 | 1372313 | 18 | 2 [1] | [1] 3 | ycjT | kojibiose phosphorylase |
* | * | ÷ | NZ_CP009273 | 1380501 | 1380511 | 11 | 3 [0] | [1] 5 | ycjF | YcjF family protein |
* | * | ÷ | NZ_CP009273 | 1380711 | 1380739 | 29 | 2 [1] | [1] 2 | ycjF | YcjF family protein |
* | * | ÷ | NZ_CP009273 | 1393601 | 1393631 | 31 | 4 [1] | [1] 2 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr |
* | * | ÷ | NZ_CP009273 | 1395695 | 1395703 | 9 | 3 [1] | [0] 2 | abgT | p‑aminobenzoyl‑glutamate transporter |
* | * | ÷ | NZ_CP009273 | 1397418 | 1397439 | 22 | 2 [0] | [1] 5 | abgB | p‑aminobenzoyl‑glutamate hydrolase subunit AbgB |
* | * | ÷ | NZ_CP009273 | 1398948 | 1398976 | 29 | 2 [1] | [1] 3 | abgA/abgR | p‑aminobenzoyl‑glutamate hydrolase subunit AbgA/LysR family transcriptional regulator |
* | * | ÷ | NZ_CP009273 | 1407987 | 1408004 | 18 | 2 [1] | [0] 2 | [rcbA]–[ralR] | [rcbA],[ralR] |
* | * | ÷ | NZ_CP009273 | 1409591 | 1409607 | 17 | 3 [0] | [0] 2 | recE | exodeoxyribonuclease VIII |
* | * | ÷ | NZ_CP009273 | 1423869 | 1423889 | 21 | 2 [1] | [1] 2 | stfR | prophage tail fiber N‑terminal domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1424078 | 1424151 | 74 | 2 [1] | [1] 2 | stfR | prophage tail fiber N‑terminal domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1424575 | 1424618 | 44 | 3 [1] | [1] 2 | stfR | prophage tail fiber N‑terminal domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1476025 | 1476094 | 70 | 3 [1] | [1] 2 | ynbD | phosphatase PAP2/dual specificity phosphatase family protein |
* | * | ÷ | NZ_CP009273 | 1498038 | 1498059 | 22 | 4 [1] | [0] 2 | insQ | RNA‑guided endonuclease TnpB family protein |
* | * | ÷ | NZ_CP009273 | 1517189 | 1517243 | 55 | 2 [1] | [1] 5 | yncD | TonB‑dependent receptor |
* | * | ÷ | NZ_CP009273 | 1524561 | 1524598 | 38 | 2 [0] | [1] 2 | BW25113_RS26145 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 1529021 | 1529066 | 46 | 2 [0] | [1] 2 | nhoA | N‑hydroxyarylamine O‑acetyltransferase |
* | * | ÷ | NZ_CP009273 | 1577035 | 1577061 | 27 | 2 [1] | [1] 2 | ydeN/ydeO | sulfatase/acid stress response transcriptional regulator YdeO |
* | * | ÷ | NZ_CP009273 | 1622848 | 1622863 | 16 | 3 [0] | [1] 2 | ydfH | DNA‑binding transcriptional regulator rspR |
* | * | ÷ | NZ_CP009273 | 1624751 | 1624844 | 94 | 2 [1] | [1] 2 | ydfI | mannitol dehydrogenase family protein |
* | * | ÷ | NZ_CP009273 | 1631937 | 1631946 | 10 | 2 [0] | [1] 2 | gnsB | addiction module toxin, GnsA/GnsB family |
* | * | ÷ | NZ_CP009273 | 1633528 | 1633536 | 9 | 2 [0] | [0] 2 | rzpQ | DUF2514 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1643594 | 1643624 | 31 | 2 [1] | [0] 2 | BW25113_RS08235/dicB | hypothetical protein/cell division inhibition protein DicB |
* | * | ÷ | NZ_CP009273 | 1647851 | 1647862 | 12 | 2 [1] | [1] 2 | rspB | Zn‑dependent oxidoreductase |
* | * | ÷ | NZ_CP009273 | 1658956 | 1659060 | 105 | 2 [1] | [1] 2 | dmsD | Tat proofreading chaperone DmsD |
* | * | ÷ | NZ_CP009273 | 1663755 | 1663846 | 92 | 2 [1] | [1] 2 | ynfL | LysR family transcriptional regulator |
* | * | ÷ | NZ_CP009273 | 1678740 | 1678770 | 31 | 3 [1] | [1] 2 | tus | DNA replication terminus site‑binding protein |
* | * | ÷ | NZ_CP009273 | 1687142 | 1687192 | 51 | 2 [1] | [1] 2 | [uidB] | [uidB] |
* | * | ÷ | NZ_CP009273 | 1695932 | 1695942 | 11 | 2 [1] | [1] 3 | malY | bifunctional maltose regulon transcriptional repressor/cystathionine beta‑lyase MalY |
* | * | ÷ | NZ_CP009273 | 1709922 | 1709926 | 5 | 3 [1] | [0] 2 | pdxY | pyridoxal kinase |
* | * | ÷ | NZ_CP009273 | 1712174 | 1712204 | 31 | 2 [1] | [0] 3 | pdxH | pyridoxamine 5'‑phosphate oxidase |
* | * | ÷ | NZ_CP009273 | 1720175 | 1720195 | 21 | 2 [1] | [0] 4 | [ydhL] | [ydhL] |
* | * | ÷ | NZ_CP009273 | 1760949 | 1760959 | 11 | 2 [1] | [1] 2 | ydiJ | FAD‑binding and (Fe‑S)‑binding domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1769522 | 1769530 | 9 | 3 [1] | [0] 2 | aroD | type I 3‑dehydroquinate dehydratase |
* | * | ÷ | NZ_CP009273 | 1769782 | 1769875 | 94 | 2 [1] | [1] 3 | [ydiF] | [ydiF] |
* | * | ÷ | NZ_CP009273 | 1777795 | 1777808 | 14 | 3 [0] | [1] 2 | fadK | medium‑chain fatty‑acid‑‑CoA ligase |
* | * | ÷ | NZ_CP009273 | 1783605 | 1783624 | 20 | 4 [1] | [1] 2 | aroH | 3‑deoxy‑7‑phosphoheptulonate synthase AroH |
* | * | ÷ | NZ_CP009273 | 1800120 | 1800130 | 11 | 5 [0] | [1] 2 | ydiY | YdiY family protein |
* | * | ÷ | NZ_CP009273 | 1800462 | 1800525 | 64 | 2 [1] | [0] 3 | ydiY/pfkB | YdiY family protein/6‑phosphofructokinase II |
* | * | ÷ | NZ_CP009273 | 1807098 | 1807196 | 99 | 3 [1] | [1] 2 | BW25113_RS09050 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 1864662 | 1864696 | 35 | 2 [0] | [1] 3 | cdgI | GGDEF domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1867991 | 1868091 | 101 | 5 [1] | [1] 2 | yeaK | mischarged aminoacyl‑tRNA deacylase |
* | * | ÷ | NZ_CP009273 | 1881140 | 1881188 | 49 | 2 [1] | [1] 4 | rnd | ribonuclease D |
* | * | ÷ | NZ_CP009273 | 1905020 | 1905033 | 14 | 2 [0] | [1] 3 | yebQ | MFS transporter |
* | * | ÷ | NZ_CP009273 | 1921485 | 1921521 | 37 | 2 [1] | [0] 2 | ptrB | oligopeptidase B |
* | * | ÷ | NZ_CP009273 | 1930767 | 1930822 | 56 | 2 [0] | [1] 3 | zwf/hexR | glucose‑6‑phosphate dehydrogenase/DNA‑binding transcriptional regulator HexR |
* | * | ÷ | NZ_CP009273 | 1933310 | 1933323 | 14 | 3 [1] | [1] 4 | pyk | pyruvate kinase |
* | * | ÷ | NZ_CP009273 | 1944126 | 1944145 | 20 | 2 [1] | [0] 2 | aspS | aspartate‑‑tRNA ligase |
* | * | ÷ | NZ_CP009273 | 1974071 | 1974082 | 12 | 3 [1] | [0] 2 | otsA | alpha,alpha‑trehalose‑phosphate synthase |
* | * | ÷ | NZ_CP009273 | 1974557 | 1974577 | 21 | 2 [0] | [1] 2 | otsA | alpha,alpha‑trehalose‑phosphate synthase |
* | * | ÷ | NZ_CP009273 | 2026327 | 2026379 | 53 | 2 [1] | [0] 2 | yedJ | phosphohydrolase |
* | * | ÷ | NZ_CP009273 | 2115434 | 2115470 | 37 | 2 [1] | [1] 2 | cpsG | colanic acid biosynthesis phosphomannomutase CpsG |
* | * | ÷ | NZ_CP009273 | 2127012 | 2127022 | 11 | 2 [1] | [1] 2 | wzc | tyrosine‑protein kinase Wzc |
* | * | ÷ | NZ_CP009273 | 2144481 | 2144491 | 11 | 2 [1] | [1] 2 | yegI/yegJ | protein kinase YegI/DUF2314 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 2153237 | 2153284 | 48 | 2 [1] | [1] 3 | mdtC | multidrug efflux RND transporter permease subunit MdtC |
* | * | ÷ | NZ_CP009273 | 2183159 | 2183176 | 18 | 3 [1] | [1] 3 | yehB | fimbrial biogenesis outer membrane usher protein |
* | * | ÷ | NZ_CP009273 | 2185819 | 2185876 | 58 | 2 [1] | [1] 3 | yehD/yehE | fimbrial protein/YehE family protein |
* | * | ÷ | NZ_CP009273 | 2206899 | 2206912 | 14 | 2 [0] | [1] 2 | btsS | two‑component regulatory system sensor histidine kinase BtsS |
* | * | ÷ | NZ_CP009273 | 2257180 | 2257209 | 30 | 2 [1] | [1] 3 | fruB/setB | fused PTS fructose transporter subunit IIA/HPr protein/sugar efflux transporter SetB |
* | * | ÷ | NZ_CP009273 | 2269245 | 2269292 | 48 | 3 [1] | [1] 2 | yejE | ABC transporter permease |
* | * | ÷ | NZ_CP009273 | 2338948 | 2338996 | 49 | 2 [1] | [1] 2 | nrdA | ribonucleoside‑diphosphate reductase subunit alpha |
* | * | ÷ | NZ_CP009273 | 2342484 | 2342497 | 14 | 2 [1] | [1] 4 | inaA | lipopolysaccharide kinase InaA |
* | * | ÷ | NZ_CP009273 | 2362642 | 2362651 | 10 | 3 [1] | [1] 2 | arnA | bifunctional UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronic acid oxidase ArnA |
* | * | ÷ | NZ_CP009273 | 2368427 | 2368443 | 17 | 2 [1] | [0] 2 | menE | o‑succinylbenzoate‑‑CoA ligase |
* | * | ÷ | NZ_CP009273 | 2370768 | 2370814 | 47 | 2 [1] | [1] 2 | menH | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
* | * | ÷ | NZ_CP009273 | 2386208 | 2386243 | 36 | 2 [0] | [1] 3 | nuoM | NADH‑quinone oxidoreductase subunit M |
* | * | ÷ | NZ_CP009273 | 2436376 | 2436379 | 4 | 2 [1] | [0] 3 | mnmC | bifunctional tRNA (5‑methylaminomethyl‑2‑thiouridine)(34)‑methyltransferase MnmD/FAD‑dependent 5‑carboxymethylaminomethyl‑2‑thiouridine(34) oxidoreductase MnmC |
* | * | ÷ | NZ_CP009273 | 2467605 | 2467627 | 23 | 2 [1] | [1] 2 | yfdQ | YfdQ family protein |
* | * | ÷ | NZ_CP009273 | 2491646 | 2491692 | 47 | 2 [0] | [1] 2 | alaC | alanine transaminase |
* | * | ÷ | NZ_CP009273 | 2491806 | 2491914 | 109 | 2 [0] | [1] 2 | alaC/ypdA | alanine transaminase/two‑component system sensor histidine kinase YpdA |
* | * | ÷ | NZ_CP009273 | 2533765 | 2533782 | 18 | 2 [1] | [0] 2 | cysA | sulfate/thiosulfate ABC transporter ATP‑binding protein CysA |
* | * | ÷ | NZ_CP009273 | 2557672 | 2557705 | 34 | 2 [1] | [0] 4 | BW25113_RS12770 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2574617 | 2574632 | 16 | 2 [1] | [1] 2 | tkt | transketolase |
* | * | ÷ | NZ_CP009273 | 2626320 | 2626356 | 37 | 2 [0] | [1] 4 | guaB | IMP dehydrogenase |
* | * | ÷ | NZ_CP009273 | 2643292 | 2643294 | 3 | 2 [0] | [0] 2 | yfhM | alpha2‑macroglobulin |
* | * | ÷ | NZ_CP009273 | 2672295 | 2672361 | 67 | 2 [1] | [1] 5 | yphF | substrate‑binding domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 2696891 | 2696921 | 31 | 3 [1] | [0] 2 | rnc | ribonuclease III |
* | * | ÷ | NZ_CP009273 | 2704638 | 2704659 | 22 | 2 [1] | [0] 2 | nadB | L‑aspartate oxidase |
* | * | ÷ | NZ_CP009273 | 2747852 | 2747855 | 4 | 2 [0] | [1] 2 | ratA | type II toxin‑antitoxin system toxin RatA |
* | * | ÷ | NZ_CP009273 | 2792415 | 2792428 | 14 | 2 [1] | [0] 4 | stpA/alaE | DNA‑binding protein StpA/L‑alanine exporter AlaE |
* | * | ÷ | NZ_CP009273 | 2798162 | 2798233 | 72 | 2 [1] | [1] 2 | [proV] | [proV] |
* | * | ÷ | NZ_CP009273 | 2881550 | 2881561 | 12 | 2 [1] | [0] 2 | cysH | phosphoadenosine phosphosulfate reductase |
* | * | ÷ | NZ_CP009273 | 2988216 | 2988217 | 2 | 2 [0] | [0] 3 | BW25113_RS14850 | response regulator transcription factor |
* | * | ÷ | NZ_CP009273 | 3354471 | 3354483 | 13 | 3 [1] | [1] 2 | gltD/gltF | glutamate synthase subunit GltD/DUF1120 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 3448767 | 3448779 | 13 | 2 [1] | [0] 2 | gspA/gspC | type II secretion system protein GspA/type II secretion system protein GspC |
* | * | ÷ | NZ_CP009273 | 3630844 | 3630954 | 111 | 2 [1] | [1] 2 | yhiN/pitA | NAD(P)/FAD‑dependent oxidoreductase/inorganic phosphate transporter PitA |
* | * | ÷ | NZ_CP009273 | 3630994 | 3631137 | 144 | 2 [1] | [1] 3 | [pitA] | [pitA] |
* | * | ÷ | NZ_CP009273 | 3631175 | 3631457 | 283 | 2 [0] | [1] 2 | pitA | inorganic phosphate transporter PitA |
* | * | ÷ | NZ_CP009273 | 3631548 | 3631645 | 98 | 2 [1] | [1] 2 | pitA | inorganic phosphate transporter PitA |
* | * | ÷ | NZ_CP009273 | 3631857 | 3633153 | 1297 | 2 [1] | [1] 2 | [pitA]–uspB | [pitA],uspB |
* | * | ÷ | NZ_CP009273 | 3633291 | 3633356 | 66 | 2 [1] | [1] 2 | uspB/uspA | universal stress protein UspB/universal stress protein UspA |
* | * | ÷ | NZ_CP009273 | 3633435 | 3633563 | 129 | 2 [1] | [1] 2 | [uspA] | [uspA] |
* | * | ÷ | NZ_CP009273 | 3633658 | 3634106 | 449 | 3 [1] | [0] 2 | [uspA]–BW25113_RS26230 | [uspA],BW25113_RS26225,BW25113_RS26230 |
* | * | ÷ | NZ_CP009273 | 3634172 | 3634823 | 652 | 2 [0] | [1] 2 | [dtpB] | [dtpB] |
* | * | ÷ | NZ_CP009273 | 3634963 | 3638068 | 3106 | 2 [1] | [0] 2 | [dtpB]–[prlC] | [dtpB],rsmJ,[prlC] |
* | * | ÷ | NZ_CP009273 | 3638143 | 3639408 | 1266 | 2 [0] | [1] 2 | [prlC]–[rlmJ] | [prlC],[rlmJ] |
* | * | ÷ | NZ_CP009273 | 3639565 | 3639656 | 92 | 2 [1] | [1] 2 | [rlmJ] | [rlmJ] |
* | * | ÷ | NZ_CP009273 | 3639813 | 3639964 | 152 | 2 [1] | [1] 2 | gorA | glutathione‑disulfide reductase |
* | * | ÷ | NZ_CP009273 | 3639977 | 3640158 | 182 | 2 [1] | [1] 2 | gorA | glutathione‑disulfide reductase |
* | * | ÷ | NZ_CP009273 | 3640236 | 3641277 | 1042 | 2 [1] | [1] 2 | [gorA]–dinQ | [gorA],dinQ |
* | * | ÷ | NZ_CP009273 | 3641299 | 3641445 | 147 | 2 [1] | [1] 2 | dinQ/arsR | hypothetical protein/As(III)‑sensing metalloregulatory transcriptional repressor ArsR |
* | * | ÷ | NZ_CP009273 | 3641551 | 3642488 | 938 | 3 [1] | [1] 3 | arsR–[arsB] | arsR,[arsB] |
* | * | ÷ | NZ_CP009273 | 3642526 | 3643435 | 910 | 3 [1] | [0] 2 | arsB | arsenite/antimonite:H(+) antiporter ArsB |
* | * | ÷ | NZ_CP009273 | 3643521 | 3643640 | 120 | 2 [0] | [1] 3 | [arsB]–[arsC] | [arsB],[arsC] |
* | * | ÷ | NZ_CP009273 | 3643728 | 3645210 | 1483 | 2 [0] | [1] 2 | [arsC]–[BW25113_RS18155] | [arsC],[BW25113_RS18155] |
* | * | ÷ | NZ_CP009273 | 3645301 | 3646523–3645398 | 98–1223 | 2 [1] | [1] 2 | [BW25113_RS18155]–BW25113_RS18160 | [BW25113_RS18155],BW25113_RS18160 |
* | * | ÷ | NZ_CP009273 | 3848144 | 3848184 | 41 | 2 [1] | [1] 2 | emrD | multidrug efflux MFS transporter EmrD |
* | * | ÷ | NZ_CP009273 | 4011438 | 4011450 | 13 | 4 [1] | [1] 2 | rmuC | DNA recombination protein RmuC |
* | * | ÷ | NZ_CP009273 | 4294342 | 4294369 | 28 | 2 [0] | [1] 2 | ytcA/yjcS | YtcA family lipoprotein/alkyl sulfatase YjcS |
* | * | ÷ | NZ_CP009273 | 4466775 | 4466783 | 9 | 2 [1] | [0] 2 | BW25113_RS22080 | hypothetical protein |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | 360104 = | NA (NA) | 17 (1.360) | 11/166 | 0.2 | 54.8% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
? | NZ_CP009273 | = 360286 | 14 (1.120) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
* | ? | NZ_CP009273 | 1203246 = | 1 (0.080) | 4 (0.400) | 4/134 | 0.7 | 74.0% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
? | NZ_CP009273 | 1205075 = | 2 (0.200) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
* | ? | NZ_CP009273 | = 1203261 | 1 (0.080) | 8 (0.790) | 6/134 | 0.4 | 85.1% | coding (305/630 nt) | BW25113_RS05990 | hypothetical protein |
? | NZ_CP009273 | = 1205058 | 2 (0.200) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
* | ? | NZ_CP009273 | = 1391494 | NA (NA) | 8 (0.650) | 5/164 | 0.7 | 100% | intergenic (+145/‑128) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
? | NZ_CP009273 | 1972747 = | 0 (0.000) | intergenic (‑293/‑487) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC | |||||
* | ? | NZ_CP009273 | = 1972751 | 0 (0.000) | 18 (1.440) | 17/166 | 0.0 | 100% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
* | ? | NZ_CP009273 | 2282398 = | NA (NA) | 9 (0.720) | 6/166 | 0.6 | 81.8% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
? | NZ_CP009273 | = 3630786 | 2 (0.160) | intergenic (‑16/‑216) | yhiN/pitA | NAD(P)/FAD‑dependent oxidoreductase/inorganic phosphate transporter PitA | |||||
* | ? | NZ_CP009273 | 4532499 = | 0 (0.000) | 11 (0.980) | 10/148 | 0.2 | 95.7% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
? | NZ_CP009273 | 4532813 = | 1 (0.090) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
* | ? | NZ_CP009273 | = 4532507 | 0 (0.000) | 7 (0.630) | 6/148 | 0.5 | 93.3% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
? | NZ_CP009273 | = 4532803 | 1 (0.090) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |