breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 49,765 C→T intergenic (+134/‑58) kefC → / → folA glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase
RA 49,884 C→T P21L (CCG→CTG)  folA → type 3 dihydrofolate reductase
RA 1,613,576 A→C D67A (GAC→GCC)  marR → multiple antibiotic resistance transcriptional regulator MarR
MC JC 2,399,465 Δ7 bp coding (650‑656/939 nt) lrhA ← transcriptional regulator LrhA

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 182223 182244 22 2 [1] [1] 2 dapD 2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑succinyltransferase
* * ÷ NZ_CP009273 234685 234772 88 3 [1] [1] 2 [BW25113_RS01095] [BW25113_RS01095]
* * ÷ NZ_CP009273 234997 235087 91 2 [1] [1] 2 BW25113_RS01095 hypothetical protein
* * ÷ NZ_CP009273 280703 280719 17 5 [0] [1] 2 yagF xylonate dehydratase YagF
* * ÷ NZ_CP009273 290520 290547 28 2 [0] [0] 3 BW25113_RS01425/ykgV hypothetical protein/helix‑turn‑helix domain‑containing protein
* * ÷ NZ_CP009273 295811 295819 9 2 [0] [0] 2 paoC aldehyde oxidoreductase molybdenum‑binding subunit PaoC
* * ÷ NZ_CP009273 327796 327876 81 3 [1] [0] 2 BW25113_RS25450/pdeL protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL
* * ÷ NZ_CP009273 356942 357584 643 2 [1] [1] 2 lacA lacA
* * ÷ NZ_CP009273 380513 380576 64 2 [1] [1] 2 BW25113_RS01880/tauA PIG‑L family deacetylase/taurine ABC transporter substrate‑binding protein
* * ÷ NZ_CP009273 396613 396647 35 2 [1] [1] 2 BW25113_RS25915 hypothetical protein
* * ÷ NZ_CP009273 418985 418994 10 2 [0] [1] 4 malZ maltodextrin glucosidase
* * ÷ NZ_CP009273 488842 488859 18 2 [0] [0] 2 dnaX DNA polymerase III subunit gamma/tau
* * ÷ NZ_CP009273 523021 523046 26 2 [0] [1] 2 [ybbC] [ybbC]
* * ÷ NZ_CP009273 567051 567138 88 4 [1] [1] 2 ybcM helix‑turn‑helix transcriptional regulator
* * ÷ NZ_CP009273 572287 572324 38 2 [1] [1] 2 BW25113_RS02855/essD porin/phage lysis protein EssD
* * ÷ NZ_CP009273 578916 578990 75 2 [1] [0] 3 BW25113_RS26085/appY tail fiber assembly protein/DNA‑binding transcriptional activator AppY
* * ÷ NZ_CP009273 581158 581190 33 2 [1] [1] 2 ompT/envY omptin family outer membrane protease OmpT/DNA‑binding transcriptional regulator EnvY
* * ÷ NZ_CP009273 619563 619567 5 2 [1] [0] 2 fepB Fe2+‑enterobactin ABC transporter substrate‑binding protein
* * ÷ NZ_CP009273 632150 632171 22 2 [1] [1] 2 ybdN/ybdO phosphoadenosine phosphosulfate reductase/LysR family transcriptional regulator
* * ÷ NZ_CP009273 651450 651462 13 2 [1] [1] 3 dcuC/pagP anaerobic C4‑dicarboxylate transporter DcuC/lipid IV(A) palmitoyltransferase PagP
* * ÷ NZ_CP009273 716379 716418 40 3 [1] [0] 2 BW25113_RS26090/kdpE leader peptide SpeFL/two‑component system response regulator KdpE
* * ÷ NZ_CP009273 716495 716526 32 4 [0] [0] 2 [kdpE] [kdpE]
* * ÷ NZ_CP009273 733502 733611 110 2 [0] [1] 2 [ybfD] [ybfD]
* * ÷ NZ_CP009273 805826 805848 23 2 [1] [0] 2 [bioB]–[bioF] [bioB],[bioF]
* * ÷ NZ_CP009273 805890 805976 87 2 [0] [1] 2 bioF 8‑amino‑7‑oxononanoate synthase
* * ÷ NZ_CP009273 806077 806098 22 2 [1] [0] 5 bioF 8‑amino‑7‑oxononanoate synthase
* * ÷ NZ_CP009273 833437 833515 79 2 [1] [0] 2 ybiJ/ybiI DUF1471 family protein YbiJ/C4‑type zinc finger protein YbiI
* * ÷ NZ_CP009273 843227 843237 11 2 [0] [0] 2 glnH glutamine ABC transporter substrate‑binding protein GlnH
* * ÷ NZ_CP009273 868591 868654 64 2 [1] [1] 3 pdeI EAL domain‑containing protein
* * ÷ NZ_CP009273 869145 869180 36 3 [0] [0] 2 pdeI EAL domain‑containing protein
* * ÷ NZ_CP009273 903030 903099 70 2 [0] [1] 6 ybjT SDR family oxidoreductase
* * ÷ NZ_CP009273 917805 917823 19 2 [1] [1] 2 [cspD] [cspD]
* * ÷ NZ_CP009273 934492 934503 12 2 [0] [0] 2 rarA replication‑associated recombination protein RarA
* * ÷ NZ_CP009273 952302 952305 4 3 [0] [1] 2 ycaP DUF421 domain‑containing protein
* * ÷ NZ_CP009273 964263 964283 21 2 [0] [0] 3 lpxK tetraacyldisaccharide 4'‑kinase
* * ÷ NZ_CP009273 982583 982601 19 2 [1] [0] 2 ompF/asnS porin OmpF/asparagine‑‑tRNA ligase
* * ÷ NZ_CP009273 982682 982728 47 2 [0] [1] 3 ompF/asnS porin OmpF/asparagine‑‑tRNA ligase
* * ÷ NZ_CP009273 982936 982958 23 2 [1] [0] 2 ompF/asnS porin OmpF/asparagine‑‑tRNA ligase
* * ÷ NZ_CP009273 993228 993306 79 2 [1] [1] 2 ssuE/elfA NADPH‑dependent FMN reductase/fimbrial protein
* * ÷ NZ_CP009273 993822 993865 44 2 [1] [1] 2 [elfA] [elfA]
* * ÷ NZ_CP009273 1020275 1020290 16 2 [1] [1] 2 helD DNA helicase IV
* * ÷ NZ_CP009273 1046355 1046363 9 2 [1] [1] 2 BW25113_RS05135/cspH IS1‑like element IS1D family transposase/cold shock‑like protein CspH
* * ÷ NZ_CP009273 1098871 1098980 110 3 [1] [1] 2 csgD/csgB biofilm master transcriptional regulator CsgD/curli minor subunit CsgB
* * ÷ NZ_CP009273 1114039 1114047 9 6 [1] [0] 4 yceJ cytochrome b
* * ÷ NZ_CP009273 1126433 1126468 36 2 [1] [1] 2 flgA/flgB flagellar basal body P‑ring formation chaperone FlgA/flagellar basal body rod protein FlgB
* * ÷ NZ_CP009273 1128347 1128397 51 2 [1] [1] 2 flgE flagellar hook protein FlgE
* * ÷ NZ_CP009273 1164353 1164357 5 4 [0] [0] 2 comR/bhsA TetR family copper‑responsive transcriptional repressor ComR/multiple stress resistance protein BhsA
* * ÷ NZ_CP009273 1193035 1193062 28 3 [1] [1] 2 BW25113_RS05920 hypothetical protein
* * ÷ NZ_CP009273 1193240 1193307 68 2 [1] [1] 2 BW25113_RS05920 hypothetical protein
* * ÷ NZ_CP009273 1205776 1205849 74 2 [1] [1] 2 [mcrA] [mcrA]
* * ÷ NZ_CP009273 1206666 1206672 7 2 [0] [1] 2 mcrA/BW25113_RS23640 5‑methylcytosine‑specific endonuclease McrA/isocitrate/isopropylmalate family dehydrogenase
* * ÷ NZ_CP009273 1207348 1207390 43 2 [1] [0] 2 iraM anti‑adapter protein IraM
* * ÷ NZ_CP009273 1207481 1207617 137 3 [1] [1] 2 iraM/BW25113_RS25985 anti‑adapter protein IraM/protein YmgK
* * ÷ NZ_CP009273 1207731 1207764 34 3 [0] [1] 3 [BW25113_RS25985] [BW25113_RS25985]
* * ÷ NZ_CP009273 1213817 1213853 37 2 [1] [1] 2 pdeG cyclic diguanylate phosphodiesterase
* * ÷ NZ_CP009273 1225845 1225847 3 2 [0] [0] 2 hlyE hemolysin HlyE
* * ÷ NZ_CP009273 1225894 1225942 49 2 [0] [1] 3 hlyE/umuD hemolysin HlyE/translesion error‑prone DNA polymerase V autoproteolytic subunit
* * ÷ NZ_CP009273 1251695 1251751 57 2 [1] [1] 2 ycgV/ychF autotransporter outer membrane beta‑barrel domain‑containing protein/redox‑regulated ATPase YchF
* * ÷ NZ_CP009273 1287800 1287836 37 2 [1] [1] 2 [galU] [galU]
* * ÷ NZ_CP009273 1307600 1307632 33 2 [1] [0] 3 yciC YciC family protein
* * ÷ NZ_CP009273 1317737 1317746 10 2 [1] [0] 4 yciV RNase AM
* * ÷ NZ_CP009273 1373688 1373699 12 2 [1] [1] 2 ycjT kojibiose phosphorylase
* * ÷ NZ_CP009273 1377903 1377925 23 2 [1] [0] 3 ycjW LacI family DNA‑binding transcriptional regulator
* * ÷ NZ_CP009273 1402016 1402032 17 2 [1] [1] 2 dgcM diguanylate cyclase DgcM
* * ÷ NZ_CP009273 1417912 1417974 63 3 [1] [1] 2 BW25113_RS26130/trkG hypothetical protein/Trk system potassium transporter TrkG
* * ÷ NZ_CP009273 1419479 1419558 80 2 [1] [1] 3 [trkG] [trkG]
* * ÷ NZ_CP009273 1431320 1431371 52 3 [1] [1] 7 ompN/nifJ porin OmpN/pyruvate:ferredoxin (flavodoxin) oxidoreductase
* * ÷ NZ_CP009273 1434475 1434484 10 2 [1] [0] 4 nifJ pyruvate:ferredoxin (flavodoxin) oxidoreductase
* * ÷ NZ_CP009273 1485134 1485186 53 2 [1] [1] 2 [cybB] [cybB]
* * ÷ NZ_CP009273 1499483 1499496 14 2 [1] [1] 2 ydcO BenE family transporter YdcO
* * ÷ NZ_CP009273 1508213 1508259 47 2 [1] [1] 3 ydcU ABC transporter permease
* * ÷ NZ_CP009273 1509287 1509334 48 3 [1] [0] 2 ydcV ABC transporter permease
* * ÷ NZ_CP009273 1518626 1518707 82 2 [1] [1] 2 yncE/ansP YncE family protein/L‑asparagine permease
* * ÷ NZ_CP009273 1521279 1521358 80 2 [1] [1] 3 yncH YncH family protein
* * ÷ NZ_CP009273 1525438 1525452 15 3 [1] [0] 2 BW25113_RS07655 ISAs1 family transposase
* * ÷ NZ_CP009273 1525561 1525580 20 3 [1] [1] 2 BW25113_RS07655 ISAs1 family transposase
* * ÷ NZ_CP009273 1539072 1539073 2 2 [1] [0] 2 BW25113_RS07710 leucine‑rich repeat domain‑containing protein
* * ÷ NZ_CP009273 1539486 1539502 17 2 [1] [1] 3 BW25113_RS07710 leucine‑rich repeat domain‑containing protein
* * ÷ NZ_CP009273 1539740 1539740 1 3 [0] [0] 2 BW25113_RS07710 leucine‑rich repeat domain‑containing protein
* * ÷ NZ_CP009273 1540300 1540465 166 2 [1] [1] 2 yddL/yddG porin/aromatic amino acid efflux DMT transporter YddG
* * ÷ NZ_CP009273 1558319 1558350 32 3 [1] [1] 2 dosP oxygen‑sensing cyclic‑di‑GMP phosphodiesterase
* * ÷ NZ_CP009273 1573264 1573276 13 2 [1] [0] 2 yddA ABC transporter ATP‑binding protein/permease
* * ÷ NZ_CP009273 1578163 1578212 50 2 [0] [0] 2 safA two‑component system connector SafA
* * ÷ NZ_CP009273 1580914 1580975 62 3 [1] [1] 3 ydeP/ydeQ acid resistance putative oxidoreductase YdeP/fimbrial protein
* * ÷ NZ_CP009273 1592531 1592607 77 2 [0] [1] 3 BW25113_RS07915/lsrK ECSE_1600 family autotransporter/autoinducer‑2 kinase
* * ÷ NZ_CP009273 1615412 1615459 48 2 [1] [1] 3 eamA/ydeE O‑acetylserine/cysteine exporter/efflux MFS transporter YdeE
* * ÷ NZ_CP009273 1617039 1617041 3 3 [0] [1] 2 mgtT protein MgtT
* * ÷ NZ_CP009273 1625169 1625232 64 2 [1] [1] 2 [ydfI] [ydfI]
* * ÷ NZ_CP009273 1631990 1631993 4 2 [0] [0] 2 gnsB addiction module toxin, GnsA/GnsB family
* * ÷ NZ_CP009273 1633003 1633294 292 2 [1] [1] 2 [rzpQ] [rzpQ]
* * ÷ NZ_CP009273 1635236 1635330 95 3 [0] [1] 3 ynfU/cspB putative zinc‑binding protein YnfU/cold shock‑like protein CspB
* * ÷ NZ_CP009273 1652197 1652294 98 2 [1] [1] 2 ynfD/ynfE DUF1161 domain‑containing protein/dimethyl sulfoxide reductase subunit A
* * ÷ NZ_CP009273 1657100 1657113 14 2 [1] [1] 2 ynfF dimethyl sulfoxide reductase subunit A
* * ÷ NZ_CP009273 1663849 1663889 41 5 [1] [1] 2 [ynfL] [ynfL]
* * ÷ NZ_CP009273 1699161 1699177 17 2 [1] [1] 3 blr/ydgT division septum protein Blr/transcription modulator YdgT
* * ÷ NZ_CP009273 1706673 1706722 50 2 [1] [1] 2 nth/dtpA endonuclease III/dipeptide/tripeptide permease DtpA
* * ÷ NZ_CP009273 1713936 1714007 72 2 [1] [1] 3 anmK/slyB anhydro‑N‑acetylmuramic acid kinase/outer membrane lipoprotein SlyB
* * ÷ NZ_CP009273 1722838 1722848 11 2 [0] [1] 3 rnt ribonuclease T
* * ÷ NZ_CP009273 1726048 1726068 21 2 [1] [1] 3 lhr ATP‑dependent helicase
* * ÷ NZ_CP009273 1738322 1738322 1 2 [0] [0] 4 mdtK multidrug efflux MATE transporter MdtK
* * ÷ NZ_CP009273 1749065 1749134 70 2 [1] [1] 2 ydhY/fumD ferredoxin‑like protein/fumarate hydratase FumD
* * ÷ NZ_CP009273 1751483 1751484 2 2 [0] [0] 2 pykF/lpp pyruvate kinase PykF/murein lipoprotein Lpp
* * ÷ NZ_CP009273 1758084 1758114 31 2 [1] [1] 3 sufB Fe‑S cluster assembly protein SufB
* * ÷ NZ_CP009273 1762746 1762756 11 2 [0] [0] 2 ydiJ FAD‑binding and (Fe‑S)‑binding domain‑containing protein
* * ÷ NZ_CP009273 1764366 1764481 116 2 [0] [1] 2 [ydiK] [ydiK]
* * ÷ NZ_CP009273 1764690 1764705 16 3 [1] [0] 4 rprA antisense sRNA RprA
* * ÷ NZ_CP009273 1782859 1782867 9 2 [1] [0] 7 aroH 3‑deoxy‑7‑phosphoheptulonate synthase AroH
* * ÷ NZ_CP009273 1797629 1797657 29 3 [0] [0] 2 espL1 type III secretion system effector EspL1
* * ÷ NZ_CP009273 1800459 1800526 68 2 [1] [1] 2 ydiY/pfkB YdiY family protein/6‑phosphofructokinase II
* * ÷ NZ_CP009273 1806973 1806980 8 2 [0] [1] 3 BW25113_RS09050 hypothetical protein
* * ÷ NZ_CP009273 1807071 1807135 65 2 [0] [1] 2 BW25113_RS09050 hypothetical protein
* * ÷ NZ_CP009273 1826266 1826285 20 2 [1] [1] 2 astC/xthA succinylornithine/acetylornithine transaminase/exodeoxyribonuclease III
* * ÷ NZ_CP009273 1828754 1828797 44 2 [1] [1] 4 ydjY lipoprotein YdjY
* * ÷ NZ_CP009273 1864681 1864791 111 2 [1] [1] 2 cdgI GGDEF domain‑containing protein
* * ÷ NZ_CP009273 1888078 1888105 28 2 [0] [1] 2 yoaB/yoaC RidA family protein/DUF1889 family protein
* * ÷ NZ_CP009273 1940452 1940487 36 2 [1] [0] 2 yobI/yebB stress response small protein YobI/YebB family permuted papain‑like enzyme
* * ÷ NZ_CP009273 2000968 2001091 124 2 [1] [1] 2 amyA alpha‑amylase
* * ÷ NZ_CP009273 2019208 2019260 53 2 [1] [1] 2 yedP mannosyl‑3‑phosphoglycerate phosphatase‑related protein
* * ÷ NZ_CP009273 2023526 2023543 18 2 [1] [1] 2 yedA drug/metabolite exporter YedA
* * ÷ NZ_CP009273 2027057 2027137 81 2 [0] [1] 2 drpB/ompC cell division protein DrpB/porin OmpC
* * ÷ NZ_CP009273 2027417 2027478 62 2 [0] [1] 2 drpB/ompC cell division protein DrpB/porin OmpC
* * ÷ NZ_CP009273 2032983 2033020 38 2 [1] [1] 3 msrP protein‑methionine‑sulfoxide reductase catalytic subunit MsrP
* * ÷ NZ_CP009273 2046710 2046780 71 2 [1] [1] 3 BW25113_RS10340 glycosyltransferase family 9 protein
* * ÷ NZ_CP009273 2097482 2097578 97 2 [1] [1] 2 wbbK glycosyltransferase family 1 protein
* * ÷ NZ_CP009273 2100158 2100191 34 2 [0] [1] 3 wzy O16 family O‑antigen polymerase
* * ÷ NZ_CP009273 2106883 2106941 59 2 [1] [1] 2 [galF] [galF]
* * ÷ NZ_CP009273 2118524 2118558 35 3 [1] [1] 3 wcaI colanic acid biosynthesis fucosyltransferase WcaI
* * ÷ NZ_CP009273 2178219 2178241 23 2 [1] [1] 3 thiM hydroxyethylthiazole kinase
* * ÷ NZ_CP009273 2185835 2185949 115 3 [1] [1] 4 yehD/yehE fimbrial protein/YehE family protein
* * ÷ NZ_CP009273 2212593 2212622 30 2 [1] [1] 2 osmF glycine betaine ABC transporter substrate‑binding protein OsmF
* * ÷ NZ_CP009273 2227489 2227497 9 2 [1] [1] 2 yeiS/preT DUF2542 family protein/NAD‑dependent dihydropyrimidine dehydrogenase subunit PreT
* * ÷ NZ_CP009273 2297185 2297253 69 2 [1] [1] 2 [BW25113_RS25870] [BW25113_RS25870]
* * ÷ NZ_CP009273 2348046 2348137 92 2 [0] [1] 2 glpB glycerol‑3‑phosphate dehydrogenase subunit GlpB
* * ÷ NZ_CP009273 2376964 2377017 54 2 [1] [1] 2 elaD deubiquitinase ElaD
* * ÷ NZ_CP009273 2377295 2377312 18 2 [1] [1] 2 elaD deubiquitinase ElaD
* * ÷ NZ_CP009273 2400573 2400635 63 2 [1] [1] 3 lrhA/alaA transcriptional regulator LrhA/alanine transaminase AlaA
* * ÷ NZ_CP009273 2450597 2450604 8 2 [1] [0] 2 fadJ fatty acid oxidation complex subunit alpha FadJ
* * ÷ NZ_CP009273 2456408 2456500 93 2 [1] [1] 2 [BW25113_RS12235] [BW25113_RS12235]
* * ÷ NZ_CP009273 2457855 2457859 5 2 [1] [0] 3 mlaA phospholipid‑binding lipoprotein MlaA
* * ÷ NZ_CP009273 2463171 2463234 64 3 [1] [1] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2499441 2499463 23 4 [1] [0] 2 ypdF aminopeptidase
* * ÷ NZ_CP009273 2504110 2504150 41 2 [1] [0] 2 yfeO ion channel protein
* * ÷ NZ_CP009273 2551290 2551298 9 4 [1] [0] 2 eutB ethanolamine ammonia‑lyase subunit alpha
* * ÷ NZ_CP009273 2563808 2563864 57 3 [1] [1] 3 eutE aldehyde dehydrogenase EutE
* * ÷ NZ_CP009273 2584401 2584495 95 4 [1] [0] 2 ypfM/yffB protein YpfM/ArsC family reductase
* * ÷ NZ_CP009273 2616219 2616236 18 2 [1] [1] 2 [purN] [purN]
* * ÷ NZ_CP009273 2639464 2639485 22 2 [1] [1] 2 pbpC peptidoglycan glycosyltransferase PbpC
* * ÷ NZ_CP009273 2675500 2675523 24 2 [1] [0] 2 yphG DUF5107 domain‑containing protein
* * ÷ NZ_CP009273 2753736 2753787 52 2 [1] [1] 2 [yfjI] [yfjI]
* * ÷ NZ_CP009273 2767643 2767649 7 2 [1] [1] 2 BW25113_RS13770 hypothetical protein
* * ÷ NZ_CP009273 2767798 2767808 11 3 [0] [0] 2 BW25113_RS13770 hypothetical protein
* * ÷ NZ_CP009273 2768274 2768282 9 2 [1] [0] 2 BW25113_RS13770 hypothetical protein
* * ÷ NZ_CP009273 2792331 2792377 47 2 [1] [1] 2 stpA/alaE DNA‑binding protein StpA/L‑alanine exporter AlaE
* * ÷ NZ_CP009273 2898874 2899025 152 3 [1] [1] 3 [BW25113_RS14445] [BW25113_RS14445]
* * ÷ NZ_CP009273 2980534 2980588 55 2 [1] [1] 2 yqeG/yqeH amino acid permease/helix‑turn‑helix transcriptional regulator
* * ÷ NZ_CP009273 2981736 2981794 59 2 [1] [1] 2 yqeH/yqeI helix‑turn‑helix transcriptional regulator/transcriptional regulator
* * ÷ NZ_CP009273 2987541 2987590 50 2 [1] [1] 2 BW25113_RS14845 lytic transglycosylase domain‑containing protein
* * ÷ NZ_CP009273 2988504 2988565 62 2 [1] [1] 2 BW25113_RS14850/BW25113_RS26010 response regulator transcription factor/hypothetical protein
* * ÷ NZ_CP009273 3367965 3367973 9 2 [1] [1] 2 nanR/dcuC transcriptional regulator NanR/anaerobic C4‑dicarboxylate transporter DcuC
* * ÷ NZ_CP009273 3406899 3406921 23 2 [0] [1] 2 acrS/acrE multidrug efflux transporter transcriptional repressor AcrS/multidrug efflux RND transporter periplasmic adaptor subunit AcrE
* * ÷ NZ_CP009273 3463384 3463411 28 2 [1] [0] 2 chiA/tuf bifunctional chitinase/lysozyme/elongation factor Tu
* * ÷ NZ_CP009273 3575380 3575407 28 2 [1] [1] 2 hcp Hcp1 family type VI secretion system effector
* * ÷ NZ_CP009273 3629247 3631164 1918 22 [0] [1] 2 [yhiM]–[pitA] [yhiM],yhiN,[pitA]
* * ÷ NZ_CP009273 3631228 3632160 933 2 [1] [0] 2 pitA inorganic phosphate transporter PitA
* * ÷ NZ_CP009273 3632221 3633578 1358 2 [0] [1] 2 [pitA]–[uspA] [pitA],uspB,[uspA]
* * ÷ NZ_CP009273 3633581 3634377 797 2 [1] [1] 2 [uspA]–[dtpB] [uspA],BW25113_RS26225,BW25113_RS26230,[dtpB]
* * ÷ NZ_CP009273 3634464 3634561 98 2 [1] [0] 2 dtpB dipeptide/tripeptide permease DtpB
* * ÷ NZ_CP009273 3634640 3635486 847 3 [1] [1] 2 dtpB dipeptide/tripeptide permease DtpB
* * ÷ NZ_CP009273 3635501 3635664 164 2 [1] [1] 2 dtpB dipeptide/tripeptide permease DtpB
* * ÷ NZ_CP009273 3635726 3635929 204 2 [1] [1] 2 [rsmJ] [rsmJ]
* * ÷ NZ_CP009273 3636020 3637816 1797 2 [1] [1] 2 [rsmJ]–[prlC] [rsmJ],[prlC]
* * ÷ NZ_CP009273 3637905 3638137 233 2 [1] [0] 2 prlC oligopeptidase A
* * ÷ NZ_CP009273 3638180 3638259 80 2 [0] [1] 2 prlC oligopeptidase A
* * ÷ NZ_CP009273 3638274 3638499 226 2 [1] [1] 2 prlC oligopeptidase A
* * ÷ NZ_CP009273 3638511 3638862 352 2 [1] [0] 2 [prlC]–[rlmJ] [prlC],[rlmJ]
* * ÷ NZ_CP009273 3638931 3639281 351 3 [1] [1] 2 rlmJ 23S rRNA (adenine(2030)‑N(6))‑methyltransferase
* * ÷ NZ_CP009273 3639334 3640004 671 2 [1] [0] 2 [rlmJ]–[gorA] [rlmJ],[gorA]
* * ÷ NZ_CP009273 3640068 3640801 734 2 [0] [0] 2 gorA glutathione‑disulfide reductase
* * ÷ NZ_CP009273 3640883 3641257 375 2 [0] [1] 2 [gorA]–dinQ [gorA],dinQ
* * ÷ NZ_CP009273 3641303 3641929 627 2 [1] [0] 2 [arsR] [arsR]
* * ÷ NZ_CP009273 3641975 3642320 346 2 [0] [0] 2 [arsR]–[arsB] [arsR],[arsB]
* * ÷ NZ_CP009273 3642411 3642449 39 2 [0] [0] 2 arsB arsenite/antimonite:H(+) antiporter ArsB
* * ÷ NZ_CP009273 3642540 3642962 423 2 [0] [1] 2 arsB arsenite/antimonite:H(+) antiporter ArsB
* * ÷ NZ_CP009273 3643053 3643337 285 2 [1] [0] 2 arsB arsenite/antimonite:H(+) antiporter ArsB
* * ÷ NZ_CP009273 3643436 3646529–3645398 1963–3094 2 [1] [1] 2 [arsB]–BW25113_RS18160 [arsB],arsC,BW25113_RS18155,BW25113_RS18160
* * ÷ NZ_CP009273 3791611 3791640 30 2 [1] [1] 2 waaU glycosyltransferase family 9 protein
* * ÷ NZ_CP009273 3792077 3792156 80 3 [1] [1] 2 waaU glycosyltransferase family 9 protein
* * ÷ NZ_CP009273 3792547 3792668 122 2 [1] [1] 2 waaU glycosyltransferase family 9 protein
* * ÷ NZ_CP009273 3792732 3792849 118 2 [1] [1] 4 waaZ 3‑deoxy‑D‑manno‑oct‑2‑ulosonate III transferase WaaZ
* * ÷ NZ_CP009273 3793530 3793565 36 2 [1] [1] 4 [waaZ] [waaZ]
* * ÷ NZ_CP009273 3796325 3796355 31 3 [1] [0] 2 waaO lipopolysaccharide 3‑alpha‑galactosyltransferase
* * ÷ NZ_CP009273 3837241 3837277 37 2 [1] [1] 2 adeQ/adeD adenine permease AdeQ/adenine deaminase
* * ÷ NZ_CP009273 4205254 4205281 28 2 [1] [0] 2 metA/aceB homoserine O‑succinyltransferase/malate synthase A
* * ÷ NZ_CP009273 4272950 4273022 73 2 [1] [1] 2 [espX5] [espX5]
* * ÷ NZ_CP009273 4465786 4465838 53 2 [1] [1] 2 BW25113_RS22080 hypothetical protein
* * ÷ NZ_CP009273 4466774 4466879 106 3 [0] [1] 3 BW25113_RS22080 hypothetical protein
* * ÷ NZ_CP009273 4475240 4475240 1 4 [0] [0] 2 pepA leucyl aminopeptidase

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 360104 =NA (NA)9 (0.650) 7/164 0.6 47.4% intergenic (‑35/+251) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
?NZ_CP009273 = 360286 10 (0.720)intergenic (‑217/+69) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
* ? NZ_CP009273 = 1391495NA (NA)10 (0.720) 8/164 0.5 100% intergenic (+146/‑127) BW25113_RS06980/ynaJ IS5‑like element IS5 family transposase/DUF2534 family protein
?NZ_CP009273 1903069 = 0 (0.000)intergenic (‑46/‑113) mgrB/yobH PhoP/PhoQ regulator MgrB/YobH family protein
* ? NZ_CP009273 = 19030720 (0.000)11 (0.790) 10/164 0.3 100% intergenic (‑49/‑110) mgrB/yobH PhoP/PhoQ regulator MgrB/YobH family protein
?NZ_CP009273 = 2096424 NA (NA)intergenic (‑68/+3) BW25113_RS10605/wbbL IS5‑like element IS5 family transposase/N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL
* ? NZ_CP009273 1972747 =0 (0.000)6 (0.460) 5/156 0.8 100% intergenic (‑293/‑487) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
?NZ_CP009273 2282399 = NA (NA)pseudogene (2/2532 nt) yejO autotransporter YejO
* ? NZ_CP009273 = 19727510 (0.000)28 (2.020) 18/164 0.1 100% intergenic (‑297/‑483) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
?NZ_CP009273 = 2283592 NA (NA)intergenic (‑68/‑387) BW25113_RS11435/narP IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP
* ? NZ_CP009273 2282398 =NA (NA)22 (1.590) 15/164 0.1 91.7% pseudogene (3/2532 nt) yejO autotransporter YejO
?NZ_CP009273 3512437 = 2 (0.140)intergenic (‑14/+387) aroK/hofQ shikimate kinase AroK/DNA uptake porin HofQ
* ? NZ_CP009273 = 2283591NA (NA)25 (1.830) 16/162 0.1 86.4% intergenic (‑67/‑388) BW25113_RS11435/narP IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP
?NZ_CP009273 = 3512441 4 (0.290)intergenic (‑18/+383) aroK/hofQ shikimate kinase AroK/DNA uptake porin HofQ
* ? NZ_CP009273 = 36292460 (0.000)22 (1.590) 12/164 0.2 100% coding (1046/1053 nt) yhiM DUF2776 domain‑containing protein
?NZ_CP009273 3645396 = NA (NA)pseudogene (746/747 nt) BW25113_RS18155 hypothetical protein