mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutation | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 356981 | 357570 | 590 | 5 [0] | [2] 6 | lacA | galactoside O‑acetyltransferase |
| * | * | ÷ | NZ_CP009273 | 579893 | 579932 | 40 | 5 [3] | [1] 6 | appY/ompT | DNA‑binding transcriptional activator AppY/omptin family outer membrane protease OmpT |
| * | * | ÷ | NZ_CP009273 | 993170 | 993270 | 101 | 4 [2] | [3] 4 | ssuE/elfA | NADPH‑dependent FMN reductase/fimbrial protein |
| * | * | ÷ | NZ_CP009273 | 1193090 | 1193159 | 70 | 4 [3] | [3] 5 | BW25113_RS05920 | hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 1207571 | 1207613 | 43 | 4 [3] | [3] 5 | iraM/BW25113_RS25985 | anti‑adapter protein IraM/protein YmgK |
| * | * | ÷ | NZ_CP009273 | 1207676 | 1207691 | 16 | 4 [1] | [0] 4 | iraM/BW25113_RS25985 | anti‑adapter protein IraM/protein YmgK |
| * | * | ÷ | NZ_CP009273 | 1459394 | 1459516 | 123 | 4 [3] | [3] 5 | BW25113_RS25580 | BW25113_RS25580 |
| * | * | ÷ | NZ_CP009273 | 1524293 | 1524331 | 39 | 4 [2] | [3] 5 | BW25113_RS07645/BW25113_RS26145 | RHS repeat protein/hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 1807050 | 1807114 | 65 | 4 [2] | [3] 4 | BW25113_RS09050 | hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 2779835 | 2779881 | 47 | 5 [3] | [2] 5 | BW25113_RS26005 | alpha‑amylase family glycosyl hydrolase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 183 (4.360) | 51/166 | 0.0 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 6 (0.140) | 16 (0.470) | 13/134 | 0.7 | 74.7% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | 1205075 = | 6 (0.180) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 6 (0.140) | 13 (0.380) | 10/134 | 1.1 | 70.6% | coding (305/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | = 1205058 | 6 (0.180) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||