mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutation | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 80476 | 80537 | 62 | 3 [1] | [1] 2 | leuL/leuO | leu operon leader peptide/transcriptional regulator LeuO |
| * | * | ÷ | NZ_CP009273 | 295814 | 295819 | 6 | 4 [1] | [0] 2 | paoC | aldehyde oxidoreductase molybdenum‑binding subunit PaoC |
| * | * | ÷ | NZ_CP009273 | 356981 | 357570 | 590 | 5 [0] | [0] 2 | lacA | galactoside O‑acetyltransferase |
| * | * | ÷ | NZ_CP009273 | 1524169 | 1524172 | 4 | 3 [1] | [0] 2 | BW25113_RS07645 | RHS repeat protein |
| * | * | ÷ | NZ_CP009273 | 1524312 | 1524401 | 90 | 3 [1] | [1] 2 | [BW25113_RS26145] | [BW25113_RS26145] |
| * | * | ÷ | NZ_CP009273 | 1633286 | 1633295 | 10 | 2 [0] | [1] 2 | [rzpQ] | [rzpQ] |
| * | * | ÷ | NZ_CP009273 | 1806970 | 1807008 | 39 | 2 [0] | [1] 3 | BW25113_RS09050 | hypothetical protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 53 (1.970) | 27/166 | 0.1 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | = 1391494 | NA (NA) | 16 (0.600) | 9/164 | 1.0 | 100% | intergenic (+145/‑128) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | 1972747 = | 0 (0.000) | intergenic (‑293/‑487) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC | |||||
| * | ? | NZ_CP009273 | = 1972751 | 0 (0.000) | 24 (0.890) | 14/166 | 0.5 | 100% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||