breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
RA | 49,765 | C→T | intergenic (+134/‑58) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
RA | 49,898 | G→A | A26T (GCC→ACC) | folA → | type 3 dihydrofolate reductase |
RA | 49,910 | T→G | W30G (TGG→GGG) | folA → | type 3 dihydrofolate reductase |
RA | 481,482 | T→G | L89* (TTA→TGA) | acrR → | multidrug efflux transporter transcriptional repressor AcrR |
RA | 1,613,378 | T→C | M1A (GTG→GCG) † | marR → | multiple antibiotic resistance transcriptional regulator MarR |
MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NZ_CP009273 | 158399 | 158436 | 38 | 2 [1] | [0] 2 | thpR | RNA 2',3'‑cyclic phosphodiesterase |
* | * | ÷ | NZ_CP009273 | 176467 | 176517 | 51 | 2 [1] | [1] 4 | dgt | dGTPase |
* | * | ÷ | NZ_CP009273 | 233688 | 233752 | 65 | 3 [1] | [1] 2 | BW25113_RS01085/BW25113_RS01090 | tRNA‑Asp/lipoprotein |
* | * | ÷ | NZ_CP009273 | 356981 | 357578 | 598 | 3 [0] | [1] 3 | [lacA] | [lacA] |
* | * | ÷ | NZ_CP009273 | 401678 | 401707 | 30 | 4 [1] | [1] 2 | [yaiI] | [yaiI] |
* | * | ÷ | NZ_CP009273 | 470457 | 470490 | 34 | 2 [1] | [1] 2 | tesB | acyl‑CoA thioesterase II |
* | * | ÷ | NZ_CP009273 | 518429 | 518470 | 42 | 2 [1] | [1] 2 | ybbP/rhsD | ABC transporter permease/rhs element protein RhsD |
* | * | ÷ | NZ_CP009273 | 567036 | 567102 | 67 | 2 [1] | [1] 2 | ybcM | helix‑turn‑helix transcriptional regulator |
* | * | ÷ | NZ_CP009273 | 574418 | 574438 | 21 | 2 [1] | [0] 2 | bor/ybcV | serum resistance lipoprotein Bor/DUF1398 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 578914 | 579073 | 160 | 3 [1] | [1] 2 | BW25113_RS26085/appY | tail fiber assembly protein/DNA‑binding transcriptional activator AppY |
* | * | ÷ | NZ_CP009273 | 579578 | 579628 | 51 | 2 [1] | [1] 2 | appY | DNA‑binding transcriptional activator AppY |
* | * | ÷ | NZ_CP009273 | 591328 | 591367 | 40 | 2 [1] | [1] 4 | cusC | Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC |
* | * | ÷ | NZ_CP009273 | 608117 | 608132 | 16 | 2 [1] | [0] 2 | fepA/fes | siderophore enterobactin receptor FepA/enterochelin esterase |
* | * | ÷ | NZ_CP009273 | 633067 | 633166 | 100 | 2 [1] | [1] 3 | [ybdO] | [ybdO] |
* | * | ÷ | NZ_CP009273 | 647452 | 647631 | 180 | 2 [1] | [1] 3 | citC/dpiB | [citrate (pro‑3S)‑lyase] ligase/sensor histidine kinase DpiB |
* | * | ÷ | NZ_CP009273 | 651724 | 651741 | 18 | 5 [0] | [1] 2 | dcuC/pagP | anaerobic C4‑dicarboxylate transporter DcuC/lipid IV(A) palmitoyltransferase PagP |
* | * | ÷ | NZ_CP009273 | 674902 | 674913 | 12 | 3 [0] | [1] 2 | ybeT/ybeU | tetratricopeptide repeat protein/DUF1266 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 686119 | 686127 | 9 | 2 [0] | [0] 4 | lnt | apolipoprotein N‑acyltransferase |
* | * | ÷ | NZ_CP009273 | 686602 | 686612 | 11 | 2 [0] | [0] 7 | corC | CNNM family magnesium/cobalt transport protein CorC |
* | * | ÷ | NZ_CP009273 | 699417 | 699436 | 20 | 2 [1] | [1] 2 | nagE | PTS N‑acetyl glucosamine transporter subunit IIABC |
* | * | ÷ | NZ_CP009273 | 704182 | 704192 | 11 | 2 [1] | [1] 2 | chiP | chitoporin |
* | * | ÷ | NZ_CP009273 | 706816 | 706826 | 11 | 4 [0] | [1] 2 | fldA | flavodoxin FldA |
* | * | ÷ | NZ_CP009273 | 724885 | 724984–724969 | 85–100 | 2 [1] | [1] 2 | ybfA/rhsC | YbfA family protein/rhs element protein RhsC |
* | * | ÷ | NZ_CP009273 | 772507 | 772521 | 15 | 2 [1] | [0] 2 | tolA | cell envelope integrity protein TolA |
* | * | ÷ | NZ_CP009273 | 838688 | 838739 | 52 | 3 [1] | [1] 2 | [rlmF]–[ybiO] | [rlmF],[ybiO] |
* | * | ÷ | NZ_CP009273 | 874151 | 874188 | 38 | 4 [1] | [1] 2 | bssR/yliI | biofilm formation regulator BssR/aldose sugar dehydrogenase YliI |
* | * | ÷ | NZ_CP009273 | 902996 | 903035 | 40 | 2 [1] | [1] 2 | ybjT | SDR family oxidoreductase |
* | * | ÷ | NZ_CP009273 | 925570 | 925585 | 16 | 2 [0] | [1] 2 | cydD | cysteine/glutathione ABC transporter permease/ATP‑binding protein CydD |
* | * | ÷ | NZ_CP009273 | 927673 | 927709 | 37 | 2 [1] | [1] 3 | trxB/lrp | thioredoxin‑disulfide reductase/leucine‑responsive transcriptional regulator Lrp |
* | * | ÷ | NZ_CP009273 | 930297 | 930365 | 69 | 2 [1] | [0] 2 | ftsK | DNA translocase FtsK |
* | * | ÷ | NZ_CP009273 | 930788 | 930854 | 67 | 3 [1] | [1] 2 | ftsK | DNA translocase FtsK |
* | * | ÷ | NZ_CP009273 | 930915 | 930956 | 42 | 2 [1] | [1] 2 | ftsK | DNA translocase FtsK |
* | * | ÷ | NZ_CP009273 | 957259 | 957288 | 30 | 2 [1] | [1] 2 | cmk | (d)CMP kinase |
* | * | ÷ | NZ_CP009273 | 964744 | 964778 | 35 | 6 [1] | [1] 3 | lpxK | tetraacyldisaccharide 4'‑kinase |
* | * | ÷ | NZ_CP009273 | 982913 | 982962 | 50 | 2 [1] | [1] 2 | ompF/asnS | porin OmpF/asparagine‑‑tRNA ligase |
* | * | ÷ | NZ_CP009273 | 993098 | 993208 | 111 | 2 [0] | [1] 3 | ssuE/elfA | NADPH‑dependent FMN reductase/fimbrial protein |
* | * | ÷ | NZ_CP009273 | 997046 | 997055 | 10 | 3 [0] | [1] 2 | elfC | fimbrial biogenesis usher protein |
* | * | ÷ | NZ_CP009273 | 1001065 | 1001135 | 71 | 2 [1] | [1] 2 | pyrD | quinone‑dependent dihydroorotate dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1028337 | 1028374 | 38 | 2 [1] | [1] 2 | hyaA | hydrogenase 1 small subunit |
* | * | ÷ | NZ_CP009273 | 1028574 | 1028643 | 70 | 5 [1] | [0] 2 | hyaA | hydrogenase 1 small subunit |
* | * | ÷ | NZ_CP009273 | 1042668 | 1042677 | 10 | 3 [1] | [1] 2 | gfcD | YjbH domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1061856 | 1061884 | 29 | 2 [1] | [1] 2 | agp | bifunctional glucose‑1‑phosphatase/inositol phosphatase |
* | * | ÷ | NZ_CP009273 | 1068145 | 1068190 | 46 | 2 [1] | [1] 2 | rutB | peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB |
* | * | ÷ | NZ_CP009273 | 1089159 | 1089183 | 25 | 2 [1] | [1] 2 | dgcT | GGDEF domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1098749 | 1098871 | 123 | 2 [1] | [1] 2 | csgD/csgB | biofilm master transcriptional regulator CsgD/curli minor subunit CsgB |
* | * | ÷ | NZ_CP009273 | 1109053 | 1109139 | 87 | 2 [1] | [1] 4 | yceK | YceK/YidQ family lipoprotein |
* | * | ÷ | NZ_CP009273 | 1116493 | 1116498 | 6 | 3 [1] | [1] 2 | bssS/dinI | biofilm formation regulator BssS/DNA damage‑inducible protein I |
* | * | ÷ | NZ_CP009273 | 1124485 | 1124490 | 6 | 5 [1] | [1] 3 | murJ | murein biosynthesis integral membrane protein MurJ |
* | * | ÷ | NZ_CP009273 | 1164381 | 1164434 | 54 | 2 [1] | [0] 2 | comR/bhsA | TetR family copper‑responsive transcriptional repressor ComR/multiple stress resistance protein BhsA |
* | * | ÷ | NZ_CP009273 | 1172244 | 1172340 | 97 | 2 [1] | [1] 2 | lolD | lipoprotein‑releasing ABC transporter ATP‑binding protein LolD |
* | * | ÷ | NZ_CP009273 | 1185151 | 1185180 | 30 | 2 [0] | [1] 2 | phoQ | two‑component system sensor histidine kinase PhoQ |
* | * | ÷ | NZ_CP009273 | 1187242 | 1187292 | 51 | 2 [1] | [1] 2 | purB | adenylosuccinate lyase |
* | * | ÷ | NZ_CP009273 | 1193850 | 1193922 | 73 | 2 [1] | [1] 2 | BW25113_RS05920/lit | hypothetical protein/cell death peptidase Lit |
* | * | ÷ | NZ_CP009273 | 1195573 | 1195581 | 9 | 2 [1] | [1] 4 | intE | site‑specific integrase |
* | * | ÷ | NZ_CP009273 | 1205047 | 1205074 | 28 | 2 [1] | [0] 17 | BW25113_RS06005 | phage tail protein |
* | * | ÷ | NZ_CP009273 | 1205291 | 1205293 | 3 | 2 [1] | [0] 3 | pinE | site‑specific DNA recombinase |
* | * | ÷ | NZ_CP009273 | 1207342 | 1207581 | 240 | 2 [1] | [1] 2 | [iraM] | [iraM] |
* | * | ÷ | NZ_CP009273 | 1210179 | 1210194 | 16 | 2 [1] | [1] 3 | bluF | blue light‑responsive regulator BluF |
* | * | ÷ | NZ_CP009273 | 1210299 | 1210319 | 21 | 4 [1] | [0] 4 | bluF | blue light‑responsive regulator BluF |
* | * | ÷ | NZ_CP009273 | 1210692 | 1210738 | 47 | 2 [1] | [1] 2 | bluF | blue light‑responsive regulator BluF |
* | * | ÷ | NZ_CP009273 | 1211329 | 1211375 | 47 | 2 [1] | [1] 3 | ycgZ | regulatory protein YcgZ |
* | * | ÷ | NZ_CP009273 | 1218656 | 1218736 | 81 | 2 [1] | [1] 2 | [BW25113_RS23645] | [BW25113_RS23645] |
* | * | ÷ | NZ_CP009273 | 1225342 | 1225403 | 62 | 2 [1] | [1] 4 | hlyE | hemolysin HlyE |
* | * | ÷ | NZ_CP009273 | 1225775 | 1225835 | 61 | 2 [1] | [1] 2 | hlyE | hemolysin HlyE |
* | * | ÷ | NZ_CP009273 | 1225875 | 1226013 | 139 | 2 [1] | [1] 3 | hlyE/umuD | hemolysin HlyE/translesion error‑prone DNA polymerase V autoproteolytic subunit |
* | * | ÷ | NZ_CP009273 | 1229330 | 1229400 | 71 | 3 [1] | [1] 2 | nhaB | Na(+)/H(+) antiporter NhaB |
* | * | ÷ | NZ_CP009273 | 1233601 | 1233678 | 78 | 3 [1] | [1] 2 | dadA | D‑amino acid dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1241843 | 1241940 | 98 | 3 [1] | [0] 3 | treA | alpha,alpha‑trehalase |
* | * | ÷ | NZ_CP009273 | 1246189 | 1246200 | 12 | 2 [0] | [1] 2 | dhaK | dihydroxyacetone kinase subunit DhaK |
* | * | ÷ | NZ_CP009273 | 1246721 | 1246727 | 7 | 2 [1] | [1] 2 | dhaR | dihydroxyacetone kinase operon transcriptional regulator DhaR |
* | * | ÷ | NZ_CP009273 | 1251927 | 1251962 | 36 | 2 [1] | [1] 3 | ycgV/ychF | autotransporter outer membrane beta‑barrel domain‑containing protein/redox‑regulated ATPase YchF |
* | * | ÷ | NZ_CP009273 | 1252656 | 1252698 | 43 | 6 [1] | [1] 2 | ychF | redox‑regulated ATPase YchF |
* | * | ÷ | NZ_CP009273 | 1268352 | 1268387 | 36 | 2 [1] | [1] 3 | chaC | glutathione‑specific gamma‑glutamylcyclotransferase |
* | * | ÷ | NZ_CP009273 | 1275116 | 1275143 | 28 | 2 [0] | [1] 2 | narK/narG | nitrate transporter NarK/nitrate reductase subunit alpha |
* | * | ÷ | NZ_CP009273 | 1293537 | 1293582 | 46 | 2 [1] | [0] 2 | [adhE] | [adhE] |
* | * | ÷ | NZ_CP009273 | 1293881 | 1293928 | 48 | 3 [1] | [1] 2 | adhE/ychE | bifunctional acetaldehyde‑CoA/alcohol dehydrogenase/protein YchT |
* | * | ÷ | NZ_CP009273 | 1294122 | 1294191 | 70 | 2 [1] | [1] 2 | ychE | NAAT family transporter YchE |
* | * | ÷ | NZ_CP009273 | 1297048 | 1297092 | 45 | 2 [1] | [1] 4 | [oppA] | [oppA] |
* | * | ÷ | NZ_CP009273 | 1297477 | 1297497 | 21 | 2 [1] | [1] 2 | oppB | oligopeptide ABC transporter permease OppB |
* | * | ÷ | NZ_CP009273 | 1299895 | 1299935 | 41 | 3 [1] | [1] 2 | oppD | murein tripeptide/oligopeptide ABC transporter ATP‑binding protein OppD |
* | * | ÷ | NZ_CP009273 | 1315179 | 1315234 | 56 | 2 [1] | [1] 2 | trpD | bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD |
* | * | ÷ | NZ_CP009273 | 1320814 | 1320847 | 34 | 2 [1] | [1] 2 | yciQ | DUF2207 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1321762 | 1321785 | 24 | 2 [1] | [1] 2 | rluB | 23S rRNA pseudouridine(2605) synthase RluB |
* | * | ÷ | NZ_CP009273 | 1328080 | 1328090 | 11 | 2 [0] | [0] 2 | topA/cysB | type I DNA topoisomerase/HTH‑type transcriptional regulator CysB |
* | * | ÷ | NZ_CP009273 | 1335177 | 1335239 | 63 | 2 [1] | [1] 2 | lapB | lipopolysaccharide assembly protein LapB |
* | * | ÷ | NZ_CP009273 | 1346074 | 1346101 | 28 | 2 [1] | [0] 3 | [sapF] | [sapF] |
* | * | ÷ | NZ_CP009273 | 1346373 | 1346398 | 26 | 4 [1] | [1] 2 | sapF | peptide ABC transporter ATP‑binding protein SapF |
* | * | ÷ | NZ_CP009273 | 1369551 | 1369563 | 13 | 2 [1] | [1] 2 | ycjQ | zinc‑binding alcohol dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1373728 | 1373751 | 24 | 2 [1] | [1] 2 | ycjT | kojibiose phosphorylase |
* | * | ÷ | NZ_CP009273 | 1377078 | 1377163 | 86 | 2 [1] | [0] 5 | [ompG] | [ompG] |
* | * | ÷ | NZ_CP009273 | 1377799 | 1377807 | 9 | 3 [0] | [1] 2 | ycjW | LacI family DNA‑binding transcriptional regulator |
* | * | ÷ | NZ_CP009273 | 1379894 | 1379934 | 41 | 3 [1] | [1] 2 | ycjF | YcjF family protein |
* | * | ÷ | NZ_CP009273 | 1381354 | 1381364 | 11 | 2 [1] | [1] 4 | tyrR | transcriptional regulator TyrR |
* | * | ÷ | NZ_CP009273 | 1386947 | 1386972 | 26 | 2 [1] | [1] 2 | pgrR | DNA‑binding transcriptional regulator PgrR |
* | * | ÷ | NZ_CP009273 | 1387351 | 1387365 | 15 | 2 [0] | [1] 2 | pgrR/mppA | DNA‑binding transcriptional regulator PgrR/murein tripeptide ABC transporter substrate‑binding protein MppA |
* | * | ÷ | NZ_CP009273 | 1397353 | 1397394 | 42 | 2 [1] | [0] 2 | abgB | p‑aminobenzoyl‑glutamate hydrolase subunit AbgB |
* | * | ÷ | NZ_CP009273 | 1424513 | 1424564 | 52 | 2 [1] | [1] 2 | stfR | prophage tail fiber N‑terminal domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1432793 | 1432814 | 22 | 4 [0] | [1] 2 | nifJ | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
* | * | ÷ | NZ_CP009273 | 1433463 | 1433503 | 41 | 3 [1] | [1] 3 | nifJ | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
* | * | ÷ | NZ_CP009273 | 1437113 | 1437203 | 91 | 2 [1] | [1] 2 | ldhA/ydbH | D‑lactate dehydrogenase/YdbH family protein |
* | * | ÷ | NZ_CP009273 | 1437928 | 1437928 | 1 | 2 [0] | [0] 3 | ydbH | YdbH family protein |
* | * | ÷ | NZ_CP009273 | 1453643 | 1453688 | 46 | 2 [1] | [0] 2 | paaC | 3‑hydroxyacyl‑CoA dehydrogenase PaaC |
* | * | ÷ | NZ_CP009273 | 1459318 | 1459399 | 82 | 2 [1] | [0] 2 | [paaY] | [paaY] |
* | * | ÷ | NZ_CP009273 | 1459453 | 1459542 | 90 | 2 [0] | [1] 3 | [BW25113_RS25580] | [BW25113_RS25580] |
* | * | ÷ | NZ_CP009273 | 1461789 | 1461797 | 9 | 2 [0] | [1] 2 | BW25113_RS07350 | autotransporter domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1467931 | 1467946 | 16 | 2 [0] | [0] 2 | BW25113_RS07370 | autotransporter domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1496871 | 1496886 | 16 | 2 [0] | [1] 3 | ydcL | DUF3313 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1499133 | 1499211 | 79 | 2 [1] | [1] 2 | [ydcO] | [ydcO] |
* | * | ÷ | NZ_CP009273 | 1515607 | 1515668 | 62 | 2 [1] | [1] 3 | yncD | TonB‑dependent receptor |
* | * | ÷ | NZ_CP009273 | 1521485 | 1521547 | 63 | 2 [1] | [1] 2 | yncH/BW25113_RS07645 | YncH family protein/RHS repeat protein |
* | * | ÷ | NZ_CP009273 | 1521640 | 1521656 | 17 | 2 [0] | [1] 3 | yncH/BW25113_RS07645 | YncH family protein/RHS repeat protein |
* | * | ÷ | NZ_CP009273 | 1524297 | 1524321 | 25 | 2 [1] | [1] 2 | BW25113_RS07645/BW25113_RS26145 | RHS repeat protein/hypothetical protein |
* | * | ÷ | NZ_CP009273 | 1528529 | 1528540 | 12 | 2 [1] | [1] 3 | nhoA | N‑hydroxyarylamine O‑acetyltransferase |
* | * | ÷ | NZ_CP009273 | 1534504 | 1534524 | 21 | 2 [1] | [1] 2 | narZ | nitrate reductase Z subunit alpha |
* | * | ÷ | NZ_CP009273 | 1536179 | 1536213 | 35 | 4 [0] | [1] 2 | narZ | nitrate reductase Z subunit alpha |
* | * | ÷ | NZ_CP009273 | 1539740 | 1539745 | 6 | 2 [0] | [0] 5 | BW25113_RS07710 | leucine‑rich repeat domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1540178 | 1540213 | 36 | 2 [1] | [1] 3 | yddL | porin |
* | * | ÷ | NZ_CP009273 | 1543086 | 1543154 | 69 | 2 [0] | [1] 4 | fdnG | formate dehydrogenase‑N subunit alpha |
* | * | ÷ | NZ_CP009273 | 1544383 | 1544463 | 81 | 5 [1] | [1] 2 | fdnG | formate dehydrogenase‑N subunit alpha |
* | * | ÷ | NZ_CP009273 | 1547260 | 1547275 | 16 | 2 [1] | [1] 2 | adhP | alcohol dehydrogenase AdhP |
* | * | ÷ | NZ_CP009273 | 1548877 | 1548965 | 89 | 2 [1] | [1] 2 | maeA | malate dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1549289 | 1549302 | 14 | 3 [0] | [1] 2 | maeA | malate dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1550173 | 1550199 | 27 | 3 [1] | [1] 2 | sra | stationary‑phase‑induced ribosome‑associated protein |
* | * | ÷ | NZ_CP009273 | 1566775 | 1566820 | 46 | 4 [1] | [1] 4 | pqqL | insulinase family protein |
* | * | ÷ | NZ_CP009273 | 1568292 | 1568308 | 17 | 2 [1] | [1] 2 | pqqL | insulinase family protein |
* | * | ÷ | NZ_CP009273 | 1568799 | 1568805 | 7 | 2 [0] | [1] 2 | pqqL | insulinase family protein |
* | * | ÷ | NZ_CP009273 | 1573537 | 1573729 | 193 | 2 [1] | [1] 3 | [yddA] | [yddA] |
* | * | ÷ | NZ_CP009273 | 1576929 | 1577031 | 103 | 2 [1] | [1] 3 | ydeN/ydeO | sulfatase/acid stress response transcriptional regulator YdeO |
* | * | ÷ | NZ_CP009273 | 1583172 | 1583226 | 55 | 2 [1] | [0] 2 | ydeT | fimbria/pilus outer membrane usher protein |
* | * | ÷ | NZ_CP009273 | 1592340 | 1592386 | 47 | 2 [0] | [1] 2 | [BW25113_RS07915] | [BW25113_RS07915] |
* | * | ÷ | NZ_CP009273 | 1592529 | 1592651 | 123 | 2 [1] | [1] 3 | BW25113_RS07915/lsrK | ECSE_1600 family autotransporter/autoinducer‑2 kinase |
* | * | ÷ | NZ_CP009273 | 1601524 | 1601535 | 12 | 2 [0] | [1] 2 | lsrG | (4S)‑4‑hydroxy‑5‑phosphonooxypentane‑2,3‑dione isomerase |
* | * | ÷ | NZ_CP009273 | 1618935 | 1618992 | 58 | 2 [1] | [1] 3 | ydeI/ydeJ | YdeI family stress tolerance OB fold protein/2‑oxo‑tetronate isomerase |
* | * | ÷ | NZ_CP009273 | 1631914 | 1631993 | 80 | 2 [1] | [1] 2 | gnsB | addiction module toxin, GnsA/GnsB family |
* | * | ÷ | NZ_CP009273 | 1633042 | 1633096 | 55 | 2 [1] | [1] 2 | cspI/rzpQ | cold shock protein CspI/DUF2514 domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 1668397 | 1668437 | 41 | 3 [1] | [1] 2 | tqsA | AI‑2 transporter TqsA |
* | * | ÷ | NZ_CP009273 | 1685467 | 1685482 | 16 | 4 [0] | [1] 3 | ydgA | YdgA family protein |
* | * | ÷ | NZ_CP009273 | 1691873 | 1691961 | 89 | 4 [1] | [1] 2 | hdhA | 7‑alpha‑hydroxysteroid dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1700462 | 1700495 | 34 | 2 [1] | [1] 3 | rsxA | electron transport complex subunit RsxA |
* | * | ÷ | NZ_CP009273 | 1705057 | 1705080 | 24 | 2 [1] | [1] 2 | rsxG | electron transport complex subunit RsxG |
* | * | ÷ | NZ_CP009273 | 1716903 | 1716904 | 2 | 2 [0] | [0] 4 | ydhK | FUSC family protein |
* | * | ÷ | NZ_CP009273 | 1736489 | 1736525 | 37 | 3 [1] | [1] 3 | cfa | cyclopropane fatty acyl phospholipid synthase |
* | * | ÷ | NZ_CP009273 | 1738852 | 1738881 | 30 | 5 [1] | [1] 2 | mdtK | multidrug efflux MATE transporter MdtK |
* | * | ÷ | NZ_CP009273 | 1748982 | 1749086 | 105 | 2 [0] | [1] 2 | ydhY/fumD | ferredoxin‑like protein/fumarate hydratase FumD |
* | * | ÷ | NZ_CP009273 | 1749759 | 1749759 | 1 | 2 [0] | [0] 2 | BW25113_RS26160 | protein YnhH |
* | * | ÷ | NZ_CP009273 | 1751469 | 1751576 | 108 | 2 [1] | [1] 2 | pykF/lpp | pyruvate kinase PykF/murein lipoprotein Lpp |
* | * | ÷ | NZ_CP009273 | 1772983 | 1772993 | 11 | 2 [0] | [1] 2 | ydiP | AraC family transcriptional regulator |
* | * | ÷ | NZ_CP009273 | 1783843 | 1783867 | 25 | 2 [1] | [1] 3 | aroH/hemP | 3‑deoxy‑7‑phosphoheptulonate synthase AroH/hemin uptake protein HemP |
* | * | ÷ | NZ_CP009273 | 1787832 | 1787853 | 22 | 2 [1] | [1] 2 | btuE | bifunctional thioredoxin/glutathione peroxidase |
* | * | ÷ | NZ_CP009273 | 1788124 | 1788132 | 9 | 2 [0] | [1] 4 | btuE | bifunctional thioredoxin/glutathione peroxidase |
* | * | ÷ | NZ_CP009273 | 1807082 | 1807125 | 44 | 2 [1] | [1] 3 | BW25113_RS09050 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 1807395 | 1807462 | 68 | 2 [1] | [1] 3 | BW25113_RS09050/cedA | hypothetical protein/cell division activator CedA |
* | * | ÷ | NZ_CP009273 | 1810636 | 1810649 | 14 | 2 [1] | [0] 3 | [chbG] | [chbG] |
* | * | ÷ | NZ_CP009273 | 1820049 | 1820112 | 64 | 2 [1] | [1] 2 | spy/astE | ATP‑independent periplasmic protein‑refolding chaperone Spy/succinylglutamate desuccinylase |
* | * | ÷ | NZ_CP009273 | 1823146 | 1823209 | 64 | 2 [1] | [1] 2 | astD | succinylglutamate‑semialdehyde dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1836597 | 1836626 | 30 | 2 [1] | [1] 2 | ynjH/gdhA | YnjH family protein/NADP‑specific glutamate dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1837050 | 1837090 | 41 | 2 [1] | [1] 3 | gdhA | NADP‑specific glutamate dehydrogenase |
* | * | ÷ | NZ_CP009273 | 1842624 | 1842636 | 13 | 2 [1] | [0] 2 | ydjA | NAD(P)H nitroreductase |
* | * | ÷ | NZ_CP009273 | 1861307 | 1861325 | 19 | 2 [0] | [1] 2 | yeaG | protein kinase YeaG |
* | * | ÷ | NZ_CP009273 | 1881058 | 1881194 | 137 | 2 [1] | [1] 3 | [yeaX]–[rnd] | [yeaX],[rnd] |
* | * | ÷ | NZ_CP009273 | 1888056 | 1888187 | 132 | 2 [1] | [1] 4 | yoaB/yoaC | RidA family protein/DUF1889 family protein |
* | * | ÷ | NZ_CP009273 | 1896793 | 1896799 | 7 | 2 [1] | [1] 3 | manX | PTS mannose transporter subunit IIAB |
* | * | ÷ | NZ_CP009273 | 1902355 | 1902415 | 61 | 3 [1] | [1] 2 | yobF/yebO | DUF2627 domain‑containing protein/YebO family protein |
* | * | ÷ | NZ_CP009273 | 1924480 | 1924495 | 16 | 2 [1] | [0] 2 | yebF | protein YebF |
* | * | ÷ | NZ_CP009273 | 1924537 | 1924557 | 21 | 2 [0] | [1] 3 | yebF | protein YebF |
* | * | ÷ | NZ_CP009273 | 1943915 | 1943943 | 29 | 3 [1] | [1] 2 | aspS | aspartate‑‑tRNA ligase |
* | * | ÷ | NZ_CP009273 | 1947219 | 1947279 | 61 | 2 [1] | [1] 3 | cmoA | carboxy‑S‑adenosyl‑L‑methionine synthase CmoA |
* | * | ÷ | NZ_CP009273 | 1959506 | 1959524 | 19 | 2 [1] | [1] 2 | flhB | flagellar biosynthesis protein FlhB |
* | * | ÷ | NZ_CP009273 | 1969711 | 1969729 | 19 | 3 [1] | [1] 3 | motB | flagellar motor protein MotB |
* | * | ÷ | NZ_CP009273 | 1972879 | 1972953 | 75 | 3 [1] | [1] 2 | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
* | * | ÷ | NZ_CP009273 | 1973060 | 1973132 | 73 | 2 [1] | [1] 2 | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
* | * | ÷ | NZ_CP009273 | 1983671 | 1983716 | 46 | 2 [1] | [1] 3 | tyrP | tyrosine transporter TyrP |
* | * | ÷ | NZ_CP009273 | 1995522 | 1995531 | 10 | 2 [1] | [0] 2 | fliA/fliC | RNA polymerase sigma factor FliA/H48 family flagellin FliC |
* | * | ÷ | NZ_CP009273 | 1998515 | 1998600 | 86 | 2 [1] | [1] 2 | fliD | flagellar filament capping protein FliD |
* | * | ÷ | NZ_CP009273 | 2010199 | 2010228 | 30 | 2 [1] | [1] 2 | fliI | flagellar protein export ATPase FliI |
* | * | ÷ | NZ_CP009273 | 2027066 | 2027114 | 49 | 2 [0] | [1] 2 | drpB/ompC | cell division protein DrpB/porin OmpC |
* | * | ÷ | NZ_CP009273 | 2033242 | 2033252 | 11 | 2 [0] | [0] 3 | msrP | protein‑methionine‑sulfoxide reductase catalytic subunit MsrP |
* | * | ÷ | NZ_CP009273 | 2036554 | 2036571 | 18 | 2 [1] | [0] 3 | yodB/BW25113_RS10320 | cytochrome b/tRNA‑Ser |
* | * | ÷ | NZ_CP009273 | 2050170 | 2050266 | 97 | 2 [1] | [1] 2 | amn/yeeN | AMP nucleosidase/YebC/PmpR family DNA‑binding transcriptional regulator |
* | * | ÷ | NZ_CP009273 | 2051091 | 2051130 | 40 | 2 [1] | [1] 2 | yeeN/BW25113_RS10360 | YebC/PmpR family DNA‑binding transcriptional regulator/tRNA‑Asn |
* | * | ÷ | NZ_CP009273 | 2051479 | 2051580–2051533 | 55–102 | 2 [0] | [1] 3 | [BW25113_RS10360] | [BW25113_RS10360] |
* | * | ÷ | NZ_CP009273 | 2083471 | 2083521 | 51 | 2 [0] | [1] 2 | [hisL] | [hisL] |
* | * | ÷ | NZ_CP009273 | 2097486 | 2097588 | 103 | 2 [1] | [1] 2 | wbbK | glycosyltransferase family 1 protein |
* | * | ÷ | NZ_CP009273 | 2097968 | 2097976 | 9 | 2 [1] | [0] 3 | wbbK | glycosyltransferase family 1 protein |
* | * | ÷ | NZ_CP009273 | 2100105 | 2100209 | 105 | 2 [1] | [1] 2 | wzy | O16 family O‑antigen polymerase |
* | * | ÷ | NZ_CP009273 | 2101636 | 2101663 | 28 | 2 [1] | [1] 2 | glf | UDP‑galactopyranose mutase |
* | * | ÷ | NZ_CP009273 | 2112861 | 2112908 | 48 | 2 [1] | [1] 2 | wzxC | colanic acid undecaprenyl disphosphate flippase WzxC |
* | * | ÷ | NZ_CP009273 | 2129397 | 2129415 | 19 | 5 [1] | [1] 2 | wzb | low molecular weight protein‑tyrosine‑phosphatase Wzb |
* | * | ÷ | NZ_CP009273 | 2131186 | 2131192 | 7 | 3 [0] | [1] 2 | wza/yegH | polysaccharide export protein Wza/TerC family protein |
* | * | ÷ | NZ_CP009273 | 2136613 | 2136717 | 105 | 2 [1] | [1] 2 | udk/dgcE | uridine kinase/diguanylate cyclase |
* | * | ÷ | NZ_CP009273 | 2158825 | 2158883 | 59 | 3 [1] | [1] 2 | yegP | YegP family protein |
* | * | ÷ | NZ_CP009273 | 2169573 | 2169599 | 27 | 2 [1] | [1] 2 | gatZ | tagatose‑bisphosphate aldolase subunit GatZ |
* | * | ÷ | NZ_CP009273 | 2173169 | 2173176 | 8 | 2 [1] | [1] 5 | yegT | nucleoside permease |
* | * | ÷ | NZ_CP009273 | 2178165 | 2178195 | 31 | 2 [1] | [1] 2 | thiM | hydroxyethylthiazole kinase |
* | * | ÷ | NZ_CP009273 | 2189479 | 2189530 | 52 | 2 [0] | [1] 2 | metG | methionine‑‑tRNA ligase |
* | * | ÷ | NZ_CP009273 | 2235557 | 2235626 | 70 | 4 [1] | [1] 2 | yeiB | DUF418 family protein |
* | * | ÷ | NZ_CP009273 | 2249566 | 2249576 | 11 | 2 [0] | [1] 4 | psuT | NupC/NupG family nucleoside CNT transporter |
* | * | ÷ | NZ_CP009273 | 2289096 | 2289110 | 15 | 3 [0] | [1] 3 | ccmC | heme exporter protein CcmC |
* | * | ÷ | NZ_CP009273 | 2300880 | 2300884 | 5 | 2 [0] | [1] 2 | yojI | microcin J25 efflux ABC transporter YojI |
* | * | ÷ | NZ_CP009273 | 2312891 | 2312936 | 46 | 2 [0] | [1] 2 | rcsC | two‑component system sensor histidine kinase RcsC |
* | * | ÷ | NZ_CP009273 | 2326816 | 2326827 | 12 | 2 [0] | [1] 2 | BW25113_RS11635 | alpha‑2‑macroglobulin family protein |
* | * | ÷ | NZ_CP009273 | 2359238 | 2359253 | 16 | 2 [0] | [1] 2 | ais/arnB | lipopolysaccharide core heptose(II)‑phosphate phosphatase Ais/UDP‑4‑amino‑4‑deoxy‑L‑arabinose aminotransferase |
* | * | ÷ | NZ_CP009273 | 2370721 | 2370731 | 11 | 2 [1] | [1] 2 | menH | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
* | * | ÷ | NZ_CP009273 | 2372655 | 2372677 | 23 | 2 [1] | [1] 4 | menD | 2‑succinyl‑5‑enolpyruvyl‑6‑hydroxy‑3‑ cyclohexene‑1‑carboxylic‑acid synthase |
* | * | ÷ | NZ_CP009273 | 2376968 | 2376990 | 23 | 3 [1] | [1] 2 | elaD | deubiquitinase ElaD |
* | * | ÷ | NZ_CP009273 | 2382045 | 2382173 | 129 | 3 [1] | [1] 2 | [BW25113_RS11880] | [BW25113_RS11880] |
* | * | ÷ | NZ_CP009273 | 2449170 | 2449198 | 29 | 2 [1] | [1] 2 | yfcV/sixA | fimbrial protein/phosphohistidine phosphatase SixA |
* | * | ÷ | NZ_CP009273 | 2449289 | 2449360 | 72 | 2 [1] | [1] 2 | yfcV/sixA | fimbrial protein/phosphohistidine phosphatase SixA |
* | * | ÷ | NZ_CP009273 | 2452614 | 2452633 | 20 | 2 [1] | [1] 2 | fadJ | fatty acid oxidation complex subunit alpha FadJ |
* | * | ÷ | NZ_CP009273 | 2457383 | 2457418 | 36 | 2 [1] | [1] 2 | BW25113_RS12235 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2463180 | 2463198 | 19 | 3 [1] | [1] 2 | BW25113_RS12270 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2463695 | 2463839 | 145 | 2 [0] | [0] 2 | BW25113_RS12270 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2484327 | 2484354 | 28 | 3 [1] | [1] 2 | oxc | oxalyl‑CoA decarboxylase |
* | * | ÷ | NZ_CP009273 | 2505243 | 2505277 | 35 | 2 [1] | [1] 2 | mntH | Nramp family divalent metal transporter |
* | * | ÷ | NZ_CP009273 | 2515891 | 2515937 | 47 | 2 [1] | [0] 3 | BW25113_RS12545 | DUF1427 family protein |
* | * | ÷ | NZ_CP009273 | 2518050 | 2518064 | 15 | 3 [1] | [1] 2 | xapA | xanthosine phosphorylase |
* | * | ÷ | NZ_CP009273 | 2623070 | 2623155 | 86 | 2 [1] | [1] 2 | [yfgH] | [yfgH] |
* | * | ÷ | NZ_CP009273 | 2644655 | 2644656 | 2 | 2 [1] | [0] 2 | yfhM | alpha2‑macroglobulin |
* | * | ÷ | NZ_CP009273 | 2751055 | 2751080 | 26 | 2 [1] | [1] 2 | BW25113_RS13685 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2779858 | 2779899 | 42 | 2 [1] | [1] 2 | BW25113_RS26005 | alpha‑amylase family glycosyl hydrolase |
* | * | ÷ | NZ_CP009273 | 2798182 | 2798231 | 50 | 2 [1] | [1] 2 | proV | glycine betaine/L‑proline ABC transporter ATP‑binding protein ProV |
* | * | ÷ | NZ_CP009273 | 2819083 | 2819103 | 21 | 2 [1] | [1] 3 | mltB/srlA | lytic murein transglycosylase B/PTS glucitol/sorbitol transporter subunit IIC |
* | * | ÷ | NZ_CP009273 | 2827014 | 2827059 | 46 | 2 [1] | [1] 2 | norV | anaerobic nitric oxide reductase flavorubredoxin |
* | * | ÷ | NZ_CP009273 | 2986852 | 2986877 | 26 | 2 [1] | [1] 2 | ygeH/BW25113_RS14840 | HilA family transcriptional regulator YgeH/hypothetical protein |
* | * | ÷ | NZ_CP009273 | 2988592 | 2988661 | 70 | 2 [1] | [1] 4 | BW25113_RS14850/BW25113_RS26010 | response regulator transcription factor/hypothetical protein |
* | * | ÷ | NZ_CP009273 | 3247146 | 3247166 | 21 | 2 [0] | [1] 2 | yhaJ | DNA‑binding transcriptional regulator YhaJ |
* | * | ÷ | NZ_CP009273 | 3378652 | 3378730 | 79 | 2 [1] | [1] 2 | argR/yhcN | transcriptional regulator ArgR/peroxide/acid stress response protein YhcN |
* | * | ÷ | NZ_CP009273 | 3798103 | 3798132 | 30 | 2 [1] | [0] 5 | rfaS | LPS core biosynthesis protein RfaS |
* | * | ÷ | NZ_CP009273 | 3837241 | 3837289 | 49 | 2 [0] | [1] 2 | adeQ/adeD | adenine permease AdeQ/adenine deaminase |
* | * | ÷ | NZ_CP009273 | 3996505 | 3996528 | 24 | 2 [0] | [1] 2 | BW25113_RS19825 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 4072442 | 4072447 | 6 | 2 [1] | [0] 2 | BW25113_RS26270/yiiE | hypothetical protein/ribbon‑helix‑helix domain‑containing protein |
* | * | ÷ | NZ_CP009273 | 4080276 | 4080324 | 49 | 2 [1] | [1] 2 | fdhD/yiiG | formate dehydrogenase accessory sulfurtransferase FdhD/YiiG family protein |
* | * | ÷ | NZ_CP009273 | 4241445 | 4241485 | 41 | 2 [1] | [1] 3 | BW25113_RS20970 | SopA family protein |
* | * | ÷ | NZ_CP009273 | 4258841 | 4258877 | 37 | 2 [1] | [0] 2 | BW25113_RS26020 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 4306242 | 4306246 | 5 | 2 [0] | [1] 2 | phnM | alpha‑D‑ribose 1‑methylphosphonate 5‑triphosphate diphosphatase |
* | * | ÷ | NZ_CP009273 | 4316902 | 4316959 | 58 | 3 [1] | [1] 3 | [crfC] | [crfC] |
* | * | ÷ | NZ_CP009273 | 4465855 | 4465899 | 45 | 2 [1] | [1] 3 | BW25113_RS22080 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 4466869 | 4466947 | 79 | 2 [1] | [1] 2 | BW25113_RS22080 | hypothetical protein |
* | * | ÷ | NZ_CP009273 | 4546461 | 4546476 | 16 | 2 [1] | [1] 3 | yjiC/idlP | YjfZ/YjiC family protein/iraD leader peptide IdlP |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | 360104 = | NA (NA) | 27 (2.120) | 16/168 | 0.1 | 51.9% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
? | NZ_CP009273 | = 360286 | 25 (1.960) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
* | ? | NZ_CP009273 | 1203246 = | 1 (0.080) | 16 (1.560) | 13/136 | 0.1 | 97.5% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
? | NZ_CP009273 | 1205075 = | 0 (0.000) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
* | ? | NZ_CP009273 | 1972747 = | 0 (0.000) | 5 (0.410) | 5/160 | 0.7 | 100% | intergenic (‑293/‑487) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
? | NZ_CP009273 | 2282399 = | NA (NA) | pseudogene (2/2532 nt) | yejO | autotransporter YejO | |||||
* | ? | NZ_CP009273 | = 1972751 | 0 (0.000) | 9 (0.710) | 5/168 | 0.7 | 100% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP |