breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 49,765 C→T intergenic (+134/‑58) kefC → / → folA glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase
RA 49,898 G→A A26T (GCC→ACC)  folA → type 3 dihydrofolate reductase
RA 49,910 T→G W30G (TGG→GGG)  folA → type 3 dihydrofolate reductase
RA 481,482 T→G L89* (TTA→TGA)  acrR → multidrug efflux transporter transcriptional repressor AcrR
RA 1,613,378 T→C M1A (GTG→GCG) † marR → multiple antibiotic resistance transcriptional regulator MarR
MC JC 2,399,465 Δ7 bp coding (650‑656/939 nt) lrhA ← transcriptional regulator LrhA

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 158399 158436 38 2 [1] [0] 2 thpR RNA 2',3'‑cyclic phosphodiesterase
* * ÷ NZ_CP009273 176467 176517 51 2 [1] [1] 4 dgt dGTPase
* * ÷ NZ_CP009273 233688 233752 65 3 [1] [1] 2 BW25113_RS01085/BW25113_RS01090 tRNA‑Asp/lipoprotein
* * ÷ NZ_CP009273 356981 357578 598 3 [0] [1] 3 [lacA] [lacA]
* * ÷ NZ_CP009273 401678 401707 30 4 [1] [1] 2 [yaiI] [yaiI]
* * ÷ NZ_CP009273 470457 470490 34 2 [1] [1] 2 tesB acyl‑CoA thioesterase II
* * ÷ NZ_CP009273 518429 518470 42 2 [1] [1] 2 ybbP/rhsD ABC transporter permease/rhs element protein RhsD
* * ÷ NZ_CP009273 567036 567102 67 2 [1] [1] 2 ybcM helix‑turn‑helix transcriptional regulator
* * ÷ NZ_CP009273 574418 574438 21 2 [1] [0] 2 bor/ybcV serum resistance lipoprotein Bor/DUF1398 domain‑containing protein
* * ÷ NZ_CP009273 578914 579073 160 3 [1] [1] 2 BW25113_RS26085/appY tail fiber assembly protein/DNA‑binding transcriptional activator AppY
* * ÷ NZ_CP009273 579578 579628 51 2 [1] [1] 2 appY DNA‑binding transcriptional activator AppY
* * ÷ NZ_CP009273 591328 591367 40 2 [1] [1] 4 cusC Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC
* * ÷ NZ_CP009273 608117 608132 16 2 [1] [0] 2 fepA/fes siderophore enterobactin receptor FepA/enterochelin esterase
* * ÷ NZ_CP009273 633067 633166 100 2 [1] [1] 3 [ybdO] [ybdO]
* * ÷ NZ_CP009273 647452 647631 180 2 [1] [1] 3 citC/dpiB [citrate (pro‑3S)‑lyase] ligase/sensor histidine kinase DpiB
* * ÷ NZ_CP009273 651724 651741 18 5 [0] [1] 2 dcuC/pagP anaerobic C4‑dicarboxylate transporter DcuC/lipid IV(A) palmitoyltransferase PagP
* * ÷ NZ_CP009273 674902 674913 12 3 [0] [1] 2 ybeT/ybeU tetratricopeptide repeat protein/DUF1266 domain‑containing protein
* * ÷ NZ_CP009273 686119 686127 9 2 [0] [0] 4 lnt apolipoprotein N‑acyltransferase
* * ÷ NZ_CP009273 686602 686612 11 2 [0] [0] 7 corC CNNM family magnesium/cobalt transport protein CorC
* * ÷ NZ_CP009273 699417 699436 20 2 [1] [1] 2 nagE PTS N‑acetyl glucosamine transporter subunit IIABC
* * ÷ NZ_CP009273 704182 704192 11 2 [1] [1] 2 chiP chitoporin
* * ÷ NZ_CP009273 706816 706826 11 4 [0] [1] 2 fldA flavodoxin FldA
* * ÷ NZ_CP009273 724885 724984–724969 85–100 2 [1] [1] 2 ybfA/rhsC YbfA family protein/rhs element protein RhsC
* * ÷ NZ_CP009273 772507 772521 15 2 [1] [0] 2 tolA cell envelope integrity protein TolA
* * ÷ NZ_CP009273 838688 838739 52 3 [1] [1] 2 [rlmF]–[ybiO] [rlmF],[ybiO]
* * ÷ NZ_CP009273 874151 874188 38 4 [1] [1] 2 bssR/yliI biofilm formation regulator BssR/aldose sugar dehydrogenase YliI
* * ÷ NZ_CP009273 902996 903035 40 2 [1] [1] 2 ybjT SDR family oxidoreductase
* * ÷ NZ_CP009273 925570 925585 16 2 [0] [1] 2 cydD cysteine/glutathione ABC transporter permease/ATP‑binding protein CydD
* * ÷ NZ_CP009273 927673 927709 37 2 [1] [1] 3 trxB/lrp thioredoxin‑disulfide reductase/leucine‑responsive transcriptional regulator Lrp
* * ÷ NZ_CP009273 930297 930365 69 2 [1] [0] 2 ftsK DNA translocase FtsK
* * ÷ NZ_CP009273 930788 930854 67 3 [1] [1] 2 ftsK DNA translocase FtsK
* * ÷ NZ_CP009273 930915 930956 42 2 [1] [1] 2 ftsK DNA translocase FtsK
* * ÷ NZ_CP009273 957259 957288 30 2 [1] [1] 2 cmk (d)CMP kinase
* * ÷ NZ_CP009273 964744 964778 35 6 [1] [1] 3 lpxK tetraacyldisaccharide 4'‑kinase
* * ÷ NZ_CP009273 982913 982962 50 2 [1] [1] 2 ompF/asnS porin OmpF/asparagine‑‑tRNA ligase
* * ÷ NZ_CP009273 993098 993208 111 2 [0] [1] 3 ssuE/elfA NADPH‑dependent FMN reductase/fimbrial protein
* * ÷ NZ_CP009273 997046 997055 10 3 [0] [1] 2 elfC fimbrial biogenesis usher protein
* * ÷ NZ_CP009273 1001065 1001135 71 2 [1] [1] 2 pyrD quinone‑dependent dihydroorotate dehydrogenase
* * ÷ NZ_CP009273 1028337 1028374 38 2 [1] [1] 2 hyaA hydrogenase 1 small subunit
* * ÷ NZ_CP009273 1028574 1028643 70 5 [1] [0] 2 hyaA hydrogenase 1 small subunit
* * ÷ NZ_CP009273 1042668 1042677 10 3 [1] [1] 2 gfcD YjbH domain‑containing protein
* * ÷ NZ_CP009273 1061856 1061884 29 2 [1] [1] 2 agp bifunctional glucose‑1‑phosphatase/inositol phosphatase
* * ÷ NZ_CP009273 1068145 1068190 46 2 [1] [1] 2 rutB peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB
* * ÷ NZ_CP009273 1089159 1089183 25 2 [1] [1] 2 dgcT GGDEF domain‑containing protein
* * ÷ NZ_CP009273 1098749 1098871 123 2 [1] [1] 2 csgD/csgB biofilm master transcriptional regulator CsgD/curli minor subunit CsgB
* * ÷ NZ_CP009273 1109053 1109139 87 2 [1] [1] 4 yceK YceK/YidQ family lipoprotein
* * ÷ NZ_CP009273 1116493 1116498 6 3 [1] [1] 2 bssS/dinI biofilm formation regulator BssS/DNA damage‑inducible protein I
* * ÷ NZ_CP009273 1124485 1124490 6 5 [1] [1] 3 murJ murein biosynthesis integral membrane protein MurJ
* * ÷ NZ_CP009273 1164381 1164434 54 2 [1] [0] 2 comR/bhsA TetR family copper‑responsive transcriptional repressor ComR/multiple stress resistance protein BhsA
* * ÷ NZ_CP009273 1172244 1172340 97 2 [1] [1] 2 lolD lipoprotein‑releasing ABC transporter ATP‑binding protein LolD
* * ÷ NZ_CP009273 1185151 1185180 30 2 [0] [1] 2 phoQ two‑component system sensor histidine kinase PhoQ
* * ÷ NZ_CP009273 1187242 1187292 51 2 [1] [1] 2 purB adenylosuccinate lyase
* * ÷ NZ_CP009273 1193850 1193922 73 2 [1] [1] 2 BW25113_RS05920/lit hypothetical protein/cell death peptidase Lit
* * ÷ NZ_CP009273 1195573 1195581 9 2 [1] [1] 4 intE site‑specific integrase
* * ÷ NZ_CP009273 1205047 1205074 28 2 [1] [0] 17 BW25113_RS06005 phage tail protein
* * ÷ NZ_CP009273 1205291 1205293 3 2 [1] [0] 3 pinE site‑specific DNA recombinase
* * ÷ NZ_CP009273 1207342 1207581 240 2 [1] [1] 2 [iraM] [iraM]
* * ÷ NZ_CP009273 1210179 1210194 16 2 [1] [1] 3 bluF blue light‑responsive regulator BluF
* * ÷ NZ_CP009273 1210299 1210319 21 4 [1] [0] 4 bluF blue light‑responsive regulator BluF
* * ÷ NZ_CP009273 1210692 1210738 47 2 [1] [1] 2 bluF blue light‑responsive regulator BluF
* * ÷ NZ_CP009273 1211329 1211375 47 2 [1] [1] 3 ycgZ regulatory protein YcgZ
* * ÷ NZ_CP009273 1218656 1218736 81 2 [1] [1] 2 [BW25113_RS23645] [BW25113_RS23645]
* * ÷ NZ_CP009273 1225342 1225403 62 2 [1] [1] 4 hlyE hemolysin HlyE
* * ÷ NZ_CP009273 1225775 1225835 61 2 [1] [1] 2 hlyE hemolysin HlyE
* * ÷ NZ_CP009273 1225875 1226013 139 2 [1] [1] 3 hlyE/umuD hemolysin HlyE/translesion error‑prone DNA polymerase V autoproteolytic subunit
* * ÷ NZ_CP009273 1229330 1229400 71 3 [1] [1] 2 nhaB Na(+)/H(+) antiporter NhaB
* * ÷ NZ_CP009273 1233601 1233678 78 3 [1] [1] 2 dadA D‑amino acid dehydrogenase
* * ÷ NZ_CP009273 1241843 1241940 98 3 [1] [0] 3 treA alpha,alpha‑trehalase
* * ÷ NZ_CP009273 1246189 1246200 12 2 [0] [1] 2 dhaK dihydroxyacetone kinase subunit DhaK
* * ÷ NZ_CP009273 1246721 1246727 7 2 [1] [1] 2 dhaR dihydroxyacetone kinase operon transcriptional regulator DhaR
* * ÷ NZ_CP009273 1251927 1251962 36 2 [1] [1] 3 ycgV/ychF autotransporter outer membrane beta‑barrel domain‑containing protein/redox‑regulated ATPase YchF
* * ÷ NZ_CP009273 1252656 1252698 43 6 [1] [1] 2 ychF redox‑regulated ATPase YchF
* * ÷ NZ_CP009273 1268352 1268387 36 2 [1] [1] 3 chaC glutathione‑specific gamma‑glutamylcyclotransferase
* * ÷ NZ_CP009273 1275116 1275143 28 2 [0] [1] 2 narK/narG nitrate transporter NarK/nitrate reductase subunit alpha
* * ÷ NZ_CP009273 1293537 1293582 46 2 [1] [0] 2 [adhE] [adhE]
* * ÷ NZ_CP009273 1293881 1293928 48 3 [1] [1] 2 adhE/ychE bifunctional acetaldehyde‑CoA/alcohol dehydrogenase/protein YchT
* * ÷ NZ_CP009273 1294122 1294191 70 2 [1] [1] 2 ychE NAAT family transporter YchE
* * ÷ NZ_CP009273 1297048 1297092 45 2 [1] [1] 4 [oppA] [oppA]
* * ÷ NZ_CP009273 1297477 1297497 21 2 [1] [1] 2 oppB oligopeptide ABC transporter permease OppB
* * ÷ NZ_CP009273 1299895 1299935 41 3 [1] [1] 2 oppD murein tripeptide/oligopeptide ABC transporter ATP‑binding protein OppD
* * ÷ NZ_CP009273 1315179 1315234 56 2 [1] [1] 2 trpD bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD
* * ÷ NZ_CP009273 1320814 1320847 34 2 [1] [1] 2 yciQ DUF2207 domain‑containing protein
* * ÷ NZ_CP009273 1321762 1321785 24 2 [1] [1] 2 rluB 23S rRNA pseudouridine(2605) synthase RluB
* * ÷ NZ_CP009273 1328080 1328090 11 2 [0] [0] 2 topA/cysB type I DNA topoisomerase/HTH‑type transcriptional regulator CysB
* * ÷ NZ_CP009273 1335177 1335239 63 2 [1] [1] 2 lapB lipopolysaccharide assembly protein LapB
* * ÷ NZ_CP009273 1346074 1346101 28 2 [1] [0] 3 [sapF] [sapF]
* * ÷ NZ_CP009273 1346373 1346398 26 4 [1] [1] 2 sapF peptide ABC transporter ATP‑binding protein SapF
* * ÷ NZ_CP009273 1369551 1369563 13 2 [1] [1] 2 ycjQ zinc‑binding alcohol dehydrogenase
* * ÷ NZ_CP009273 1373728 1373751 24 2 [1] [1] 2 ycjT kojibiose phosphorylase
* * ÷ NZ_CP009273 1377078 1377163 86 2 [1] [0] 5 [ompG] [ompG]
* * ÷ NZ_CP009273 1377799 1377807 9 3 [0] [1] 2 ycjW LacI family DNA‑binding transcriptional regulator
* * ÷ NZ_CP009273 1379894 1379934 41 3 [1] [1] 2 ycjF YcjF family protein
* * ÷ NZ_CP009273 1381354 1381364 11 2 [1] [1] 4 tyrR transcriptional regulator TyrR
* * ÷ NZ_CP009273 1386947 1386972 26 2 [1] [1] 2 pgrR DNA‑binding transcriptional regulator PgrR
* * ÷ NZ_CP009273 1387351 1387365 15 2 [0] [1] 2 pgrR/mppA DNA‑binding transcriptional regulator PgrR/murein tripeptide ABC transporter substrate‑binding protein MppA
* * ÷ NZ_CP009273 1397353 1397394 42 2 [1] [0] 2 abgB p‑aminobenzoyl‑glutamate hydrolase subunit AbgB
* * ÷ NZ_CP009273 1424513 1424564 52 2 [1] [1] 2 stfR prophage tail fiber N‑terminal domain‑containing protein
* * ÷ NZ_CP009273 1432793 1432814 22 4 [0] [1] 2 nifJ pyruvate:ferredoxin (flavodoxin) oxidoreductase
* * ÷ NZ_CP009273 1433463 1433503 41 3 [1] [1] 3 nifJ pyruvate:ferredoxin (flavodoxin) oxidoreductase
* * ÷ NZ_CP009273 1437113 1437203 91 2 [1] [1] 2 ldhA/ydbH D‑lactate dehydrogenase/YdbH family protein
* * ÷ NZ_CP009273 1437928 1437928 1 2 [0] [0] 3 ydbH YdbH family protein
* * ÷ NZ_CP009273 1453643 1453688 46 2 [1] [0] 2 paaC 3‑hydroxyacyl‑CoA dehydrogenase PaaC
* * ÷ NZ_CP009273 1459318 1459399 82 2 [1] [0] 2 [paaY] [paaY]
* * ÷ NZ_CP009273 1459453 1459542 90 2 [0] [1] 3 [BW25113_RS25580] [BW25113_RS25580]
* * ÷ NZ_CP009273 1461789 1461797 9 2 [0] [1] 2 BW25113_RS07350 autotransporter domain‑containing protein
* * ÷ NZ_CP009273 1467931 1467946 16 2 [0] [0] 2 BW25113_RS07370 autotransporter domain‑containing protein
* * ÷ NZ_CP009273 1496871 1496886 16 2 [0] [1] 3 ydcL DUF3313 domain‑containing protein
* * ÷ NZ_CP009273 1499133 1499211 79 2 [1] [1] 2 [ydcO] [ydcO]
* * ÷ NZ_CP009273 1515607 1515668 62 2 [1] [1] 3 yncD TonB‑dependent receptor
* * ÷ NZ_CP009273 1521485 1521547 63 2 [1] [1] 2 yncH/BW25113_RS07645 YncH family protein/RHS repeat protein
* * ÷ NZ_CP009273 1521640 1521656 17 2 [0] [1] 3 yncH/BW25113_RS07645 YncH family protein/RHS repeat protein
* * ÷ NZ_CP009273 1524297 1524321 25 2 [1] [1] 2 BW25113_RS07645/BW25113_RS26145 RHS repeat protein/hypothetical protein
* * ÷ NZ_CP009273 1528529 1528540 12 2 [1] [1] 3 nhoA N‑hydroxyarylamine O‑acetyltransferase
* * ÷ NZ_CP009273 1534504 1534524 21 2 [1] [1] 2 narZ nitrate reductase Z subunit alpha
* * ÷ NZ_CP009273 1536179 1536213 35 4 [0] [1] 2 narZ nitrate reductase Z subunit alpha
* * ÷ NZ_CP009273 1539740 1539745 6 2 [0] [0] 5 BW25113_RS07710 leucine‑rich repeat domain‑containing protein
* * ÷ NZ_CP009273 1540178 1540213 36 2 [1] [1] 3 yddL porin
* * ÷ NZ_CP009273 1543086 1543154 69 2 [0] [1] 4 fdnG formate dehydrogenase‑N subunit alpha
* * ÷ NZ_CP009273 1544383 1544463 81 5 [1] [1] 2 fdnG formate dehydrogenase‑N subunit alpha
* * ÷ NZ_CP009273 1547260 1547275 16 2 [1] [1] 2 adhP alcohol dehydrogenase AdhP
* * ÷ NZ_CP009273 1548877 1548965 89 2 [1] [1] 2 maeA malate dehydrogenase
* * ÷ NZ_CP009273 1549289 1549302 14 3 [0] [1] 2 maeA malate dehydrogenase
* * ÷ NZ_CP009273 1550173 1550199 27 3 [1] [1] 2 sra stationary‑phase‑induced ribosome‑associated protein
* * ÷ NZ_CP009273 1566775 1566820 46 4 [1] [1] 4 pqqL insulinase family protein
* * ÷ NZ_CP009273 1568292 1568308 17 2 [1] [1] 2 pqqL insulinase family protein
* * ÷ NZ_CP009273 1568799 1568805 7 2 [0] [1] 2 pqqL insulinase family protein
* * ÷ NZ_CP009273 1573537 1573729 193 2 [1] [1] 3 [yddA] [yddA]
* * ÷ NZ_CP009273 1576929 1577031 103 2 [1] [1] 3 ydeN/ydeO sulfatase/acid stress response transcriptional regulator YdeO
* * ÷ NZ_CP009273 1583172 1583226 55 2 [1] [0] 2 ydeT fimbria/pilus outer membrane usher protein
* * ÷ NZ_CP009273 1592340 1592386 47 2 [0] [1] 2 [BW25113_RS07915] [BW25113_RS07915]
* * ÷ NZ_CP009273 1592529 1592651 123 2 [1] [1] 3 BW25113_RS07915/lsrK ECSE_1600 family autotransporter/autoinducer‑2 kinase
* * ÷ NZ_CP009273 1601524 1601535 12 2 [0] [1] 2 lsrG (4S)‑4‑hydroxy‑5‑phosphonooxypentane‑2,3‑dione isomerase
* * ÷ NZ_CP009273 1618935 1618992 58 2 [1] [1] 3 ydeI/ydeJ YdeI family stress tolerance OB fold protein/2‑oxo‑tetronate isomerase
* * ÷ NZ_CP009273 1631914 1631993 80 2 [1] [1] 2 gnsB addiction module toxin, GnsA/GnsB family
* * ÷ NZ_CP009273 1633042 1633096 55 2 [1] [1] 2 cspI/rzpQ cold shock protein CspI/DUF2514 domain‑containing protein
* * ÷ NZ_CP009273 1668397 1668437 41 3 [1] [1] 2 tqsA AI‑2 transporter TqsA
* * ÷ NZ_CP009273 1685467 1685482 16 4 [0] [1] 3 ydgA YdgA family protein
* * ÷ NZ_CP009273 1691873 1691961 89 4 [1] [1] 2 hdhA 7‑alpha‑hydroxysteroid dehydrogenase
* * ÷ NZ_CP009273 1700462 1700495 34 2 [1] [1] 3 rsxA electron transport complex subunit RsxA
* * ÷ NZ_CP009273 1705057 1705080 24 2 [1] [1] 2 rsxG electron transport complex subunit RsxG
* * ÷ NZ_CP009273 1716903 1716904 2 2 [0] [0] 4 ydhK FUSC family protein
* * ÷ NZ_CP009273 1736489 1736525 37 3 [1] [1] 3 cfa cyclopropane fatty acyl phospholipid synthase
* * ÷ NZ_CP009273 1738852 1738881 30 5 [1] [1] 2 mdtK multidrug efflux MATE transporter MdtK
* * ÷ NZ_CP009273 1748982 1749086 105 2 [0] [1] 2 ydhY/fumD ferredoxin‑like protein/fumarate hydratase FumD
* * ÷ NZ_CP009273 1749759 1749759 1 2 [0] [0] 2 BW25113_RS26160 protein YnhH
* * ÷ NZ_CP009273 1751469 1751576 108 2 [1] [1] 2 pykF/lpp pyruvate kinase PykF/murein lipoprotein Lpp
* * ÷ NZ_CP009273 1772983 1772993 11 2 [0] [1] 2 ydiP AraC family transcriptional regulator
* * ÷ NZ_CP009273 1783843 1783867 25 2 [1] [1] 3 aroH/hemP 3‑deoxy‑7‑phosphoheptulonate synthase AroH/hemin uptake protein HemP
* * ÷ NZ_CP009273 1787832 1787853 22 2 [1] [1] 2 btuE bifunctional thioredoxin/glutathione peroxidase
* * ÷ NZ_CP009273 1788124 1788132 9 2 [0] [1] 4 btuE bifunctional thioredoxin/glutathione peroxidase
* * ÷ NZ_CP009273 1807082 1807125 44 2 [1] [1] 3 BW25113_RS09050 hypothetical protein
* * ÷ NZ_CP009273 1807395 1807462 68 2 [1] [1] 3 BW25113_RS09050/cedA hypothetical protein/cell division activator CedA
* * ÷ NZ_CP009273 1810636 1810649 14 2 [1] [0] 3 [chbG] [chbG]
* * ÷ NZ_CP009273 1820049 1820112 64 2 [1] [1] 2 spy/astE ATP‑independent periplasmic protein‑refolding chaperone Spy/succinylglutamate desuccinylase
* * ÷ NZ_CP009273 1823146 1823209 64 2 [1] [1] 2 astD succinylglutamate‑semialdehyde dehydrogenase
* * ÷ NZ_CP009273 1836597 1836626 30 2 [1] [1] 2 ynjH/gdhA YnjH family protein/NADP‑specific glutamate dehydrogenase
* * ÷ NZ_CP009273 1837050 1837090 41 2 [1] [1] 3 gdhA NADP‑specific glutamate dehydrogenase
* * ÷ NZ_CP009273 1842624 1842636 13 2 [1] [0] 2 ydjA NAD(P)H nitroreductase
* * ÷ NZ_CP009273 1861307 1861325 19 2 [0] [1] 2 yeaG protein kinase YeaG
* * ÷ NZ_CP009273 1881058 1881194 137 2 [1] [1] 3 [yeaX]–[rnd] [yeaX],[rnd]
* * ÷ NZ_CP009273 1888056 1888187 132 2 [1] [1] 4 yoaB/yoaC RidA family protein/DUF1889 family protein
* * ÷ NZ_CP009273 1896793 1896799 7 2 [1] [1] 3 manX PTS mannose transporter subunit IIAB
* * ÷ NZ_CP009273 1902355 1902415 61 3 [1] [1] 2 yobF/yebO DUF2627 domain‑containing protein/YebO family protein
* * ÷ NZ_CP009273 1924480 1924495 16 2 [1] [0] 2 yebF protein YebF
* * ÷ NZ_CP009273 1924537 1924557 21 2 [0] [1] 3 yebF protein YebF
* * ÷ NZ_CP009273 1943915 1943943 29 3 [1] [1] 2 aspS aspartate‑‑tRNA ligase
* * ÷ NZ_CP009273 1947219 1947279 61 2 [1] [1] 3 cmoA carboxy‑S‑adenosyl‑L‑methionine synthase CmoA
* * ÷ NZ_CP009273 1959506 1959524 19 2 [1] [1] 2 flhB flagellar biosynthesis protein FlhB
* * ÷ NZ_CP009273 1969711 1969729 19 3 [1] [1] 3 motB flagellar motor protein MotB
* * ÷ NZ_CP009273 1972879 1972953 75 3 [1] [1] 2 flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
* * ÷ NZ_CP009273 1973060 1973132 73 2 [1] [1] 2 flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
* * ÷ NZ_CP009273 1983671 1983716 46 2 [1] [1] 3 tyrP tyrosine transporter TyrP
* * ÷ NZ_CP009273 1995522 1995531 10 2 [1] [0] 2 fliA/fliC RNA polymerase sigma factor FliA/H48 family flagellin FliC
* * ÷ NZ_CP009273 1998515 1998600 86 2 [1] [1] 2 fliD flagellar filament capping protein FliD
* * ÷ NZ_CP009273 2010199 2010228 30 2 [1] [1] 2 fliI flagellar protein export ATPase FliI
* * ÷ NZ_CP009273 2027066 2027114 49 2 [0] [1] 2 drpB/ompC cell division protein DrpB/porin OmpC
* * ÷ NZ_CP009273 2033242 2033252 11 2 [0] [0] 3 msrP protein‑methionine‑sulfoxide reductase catalytic subunit MsrP
* * ÷ NZ_CP009273 2036554 2036571 18 2 [1] [0] 3 yodB/BW25113_RS10320 cytochrome b/tRNA‑Ser
* * ÷ NZ_CP009273 2050170 2050266 97 2 [1] [1] 2 amn/yeeN AMP nucleosidase/YebC/PmpR family DNA‑binding transcriptional regulator
* * ÷ NZ_CP009273 2051091 2051130 40 2 [1] [1] 2 yeeN/BW25113_RS10360 YebC/PmpR family DNA‑binding transcriptional regulator/tRNA‑Asn
* * ÷ NZ_CP009273 2051479 2051580–2051533 55–102 2 [0] [1] 3 [BW25113_RS10360] [BW25113_RS10360]
* * ÷ NZ_CP009273 2083471 2083521 51 2 [0] [1] 2 [hisL] [hisL]
* * ÷ NZ_CP009273 2097486 2097588 103 2 [1] [1] 2 wbbK glycosyltransferase family 1 protein
* * ÷ NZ_CP009273 2097968 2097976 9 2 [1] [0] 3 wbbK glycosyltransferase family 1 protein
* * ÷ NZ_CP009273 2100105 2100209 105 2 [1] [1] 2 wzy O16 family O‑antigen polymerase
* * ÷ NZ_CP009273 2101636 2101663 28 2 [1] [1] 2 glf UDP‑galactopyranose mutase
* * ÷ NZ_CP009273 2112861 2112908 48 2 [1] [1] 2 wzxC colanic acid undecaprenyl disphosphate flippase WzxC
* * ÷ NZ_CP009273 2129397 2129415 19 5 [1] [1] 2 wzb low molecular weight protein‑tyrosine‑phosphatase Wzb
* * ÷ NZ_CP009273 2131186 2131192 7 3 [0] [1] 2 wza/yegH polysaccharide export protein Wza/TerC family protein
* * ÷ NZ_CP009273 2136613 2136717 105 2 [1] [1] 2 udk/dgcE uridine kinase/diguanylate cyclase
* * ÷ NZ_CP009273 2158825 2158883 59 3 [1] [1] 2 yegP YegP family protein
* * ÷ NZ_CP009273 2169573 2169599 27 2 [1] [1] 2 gatZ tagatose‑bisphosphate aldolase subunit GatZ
* * ÷ NZ_CP009273 2173169 2173176 8 2 [1] [1] 5 yegT nucleoside permease
* * ÷ NZ_CP009273 2178165 2178195 31 2 [1] [1] 2 thiM hydroxyethylthiazole kinase
* * ÷ NZ_CP009273 2189479 2189530 52 2 [0] [1] 2 metG methionine‑‑tRNA ligase
* * ÷ NZ_CP009273 2235557 2235626 70 4 [1] [1] 2 yeiB DUF418 family protein
* * ÷ NZ_CP009273 2249566 2249576 11 2 [0] [1] 4 psuT NupC/NupG family nucleoside CNT transporter
* * ÷ NZ_CP009273 2289096 2289110 15 3 [0] [1] 3 ccmC heme exporter protein CcmC
* * ÷ NZ_CP009273 2300880 2300884 5 2 [0] [1] 2 yojI microcin J25 efflux ABC transporter YojI
* * ÷ NZ_CP009273 2312891 2312936 46 2 [0] [1] 2 rcsC two‑component system sensor histidine kinase RcsC
* * ÷ NZ_CP009273 2326816 2326827 12 2 [0] [1] 2 BW25113_RS11635 alpha‑2‑macroglobulin family protein
* * ÷ NZ_CP009273 2359238 2359253 16 2 [0] [1] 2 ais/arnB lipopolysaccharide core heptose(II)‑phosphate phosphatase Ais/UDP‑4‑amino‑4‑deoxy‑L‑arabinose aminotransferase
* * ÷ NZ_CP009273 2370721 2370731 11 2 [1] [1] 2 menH 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase
* * ÷ NZ_CP009273 2372655 2372677 23 2 [1] [1] 4 menD 2‑succinyl‑5‑enolpyruvyl‑6‑hydroxy‑3‑ cyclohexene‑1‑carboxylic‑acid synthase
* * ÷ NZ_CP009273 2376968 2376990 23 3 [1] [1] 2 elaD deubiquitinase ElaD
* * ÷ NZ_CP009273 2382045 2382173 129 3 [1] [1] 2 [BW25113_RS11880] [BW25113_RS11880]
* * ÷ NZ_CP009273 2449170 2449198 29 2 [1] [1] 2 yfcV/sixA fimbrial protein/phosphohistidine phosphatase SixA
* * ÷ NZ_CP009273 2449289 2449360 72 2 [1] [1] 2 yfcV/sixA fimbrial protein/phosphohistidine phosphatase SixA
* * ÷ NZ_CP009273 2452614 2452633 20 2 [1] [1] 2 fadJ fatty acid oxidation complex subunit alpha FadJ
* * ÷ NZ_CP009273 2457383 2457418 36 2 [1] [1] 2 BW25113_RS12235 hypothetical protein
* * ÷ NZ_CP009273 2463180 2463198 19 3 [1] [1] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2463695 2463839 145 2 [0] [0] 2 BW25113_RS12270 hypothetical protein
* * ÷ NZ_CP009273 2484327 2484354 28 3 [1] [1] 2 oxc oxalyl‑CoA decarboxylase
* * ÷ NZ_CP009273 2505243 2505277 35 2 [1] [1] 2 mntH Nramp family divalent metal transporter
* * ÷ NZ_CP009273 2515891 2515937 47 2 [1] [0] 3 BW25113_RS12545 DUF1427 family protein
* * ÷ NZ_CP009273 2518050 2518064 15 3 [1] [1] 2 xapA xanthosine phosphorylase
* * ÷ NZ_CP009273 2623070 2623155 86 2 [1] [1] 2 [yfgH] [yfgH]
* * ÷ NZ_CP009273 2644655 2644656 2 2 [1] [0] 2 yfhM alpha2‑macroglobulin
* * ÷ NZ_CP009273 2751055 2751080 26 2 [1] [1] 2 BW25113_RS13685 hypothetical protein
* * ÷ NZ_CP009273 2779858 2779899 42 2 [1] [1] 2 BW25113_RS26005 alpha‑amylase family glycosyl hydrolase
* * ÷ NZ_CP009273 2798182 2798231 50 2 [1] [1] 2 proV glycine betaine/L‑proline ABC transporter ATP‑binding protein ProV
* * ÷ NZ_CP009273 2819083 2819103 21 2 [1] [1] 3 mltB/srlA lytic murein transglycosylase B/PTS glucitol/sorbitol transporter subunit IIC
* * ÷ NZ_CP009273 2827014 2827059 46 2 [1] [1] 2 norV anaerobic nitric oxide reductase flavorubredoxin
* * ÷ NZ_CP009273 2986852 2986877 26 2 [1] [1] 2 ygeH/BW25113_RS14840 HilA family transcriptional regulator YgeH/hypothetical protein
* * ÷ NZ_CP009273 2988592 2988661 70 2 [1] [1] 4 BW25113_RS14850/BW25113_RS26010 response regulator transcription factor/hypothetical protein
* * ÷ NZ_CP009273 3247146 3247166 21 2 [0] [1] 2 yhaJ DNA‑binding transcriptional regulator YhaJ
* * ÷ NZ_CP009273 3378652 3378730 79 2 [1] [1] 2 argR/yhcN transcriptional regulator ArgR/peroxide/acid stress response protein YhcN
* * ÷ NZ_CP009273 3798103 3798132 30 2 [1] [0] 5 rfaS LPS core biosynthesis protein RfaS
* * ÷ NZ_CP009273 3837241 3837289 49 2 [0] [1] 2 adeQ/adeD adenine permease AdeQ/adenine deaminase
* * ÷ NZ_CP009273 3996505 3996528 24 2 [0] [1] 2 BW25113_RS19825 hypothetical protein
* * ÷ NZ_CP009273 4072442 4072447 6 2 [1] [0] 2 BW25113_RS26270/yiiE hypothetical protein/ribbon‑helix‑helix domain‑containing protein
* * ÷ NZ_CP009273 4080276 4080324 49 2 [1] [1] 2 fdhD/yiiG formate dehydrogenase accessory sulfurtransferase FdhD/YiiG family protein
* * ÷ NZ_CP009273 4241445 4241485 41 2 [1] [1] 3 BW25113_RS20970 SopA family protein
* * ÷ NZ_CP009273 4258841 4258877 37 2 [1] [0] 2 BW25113_RS26020 hypothetical protein
* * ÷ NZ_CP009273 4306242 4306246 5 2 [0] [1] 2 phnM alpha‑D‑ribose 1‑methylphosphonate 5‑triphosphate diphosphatase
* * ÷ NZ_CP009273 4316902 4316959 58 3 [1] [1] 3 [crfC] [crfC]
* * ÷ NZ_CP009273 4465855 4465899 45 2 [1] [1] 3 BW25113_RS22080 hypothetical protein
* * ÷ NZ_CP009273 4466869 4466947 79 2 [1] [1] 2 BW25113_RS22080 hypothetical protein
* * ÷ NZ_CP009273 4546461 4546476 16 2 [1] [1] 3 yjiC/idlP YjfZ/YjiC family protein/iraD leader peptide IdlP

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 360104 =NA (NA)27 (2.120) 16/168 0.1 51.9% intergenic (‑35/+251) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
?NZ_CP009273 = 360286 25 (1.960)intergenic (‑217/+69) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
* ? NZ_CP009273 1203246 =1 (0.080)16 (1.560) 13/136 0.1 97.5% coding (290/630 nt) BW25113_RS05990 hypothetical protein
?NZ_CP009273 1205075 = 0 (0.000)coding (40/540 nt) BW25113_RS06005 phage tail protein
* ? NZ_CP009273 1972747 =0 (0.000)5 (0.410) 5/160 0.7 100% intergenic (‑293/‑487) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
?NZ_CP009273 2282399 = NA (NA)pseudogene (2/2532 nt) yejO autotransporter YejO
* ? NZ_CP009273 = 19727510 (0.000)9 (0.710) 5/168 0.7 100% intergenic (‑297/‑483) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
?NZ_CP009273 = 2283592 NA (NA)intergenic (‑68/‑387) BW25113_RS11435/narP IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP