mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,765 | C→T | intergenic (+134/‑58) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 254375 | 256902 | 2528 | 50 [0] | [1] 3 | [crl]–[proB] | [crl],phoE,[proB] |
| * | * | ÷ | NZ_CP009273 | 256965 | 262205 | 5241 | 3 [2] | [1] 3 | [proB]–[BW25113_RS25425] | [proB],proA,BW25113_RS01235,ykfI,yafW,ykfH,ykfG,yafX,ykfF,BW25113_RS01265,[BW25113_RS25425] |
| * | * | ÷ | NZ_CP009273 | 262284 | 266935–266255 | 3972–4652 | 3 [1] | [2] 5 | [BW25113_RS25430]–[BW25113_RS01300] | [BW25113_RS25430],BW25113_RS25435,yafZ,ykfA,perR,BW25113_RS01295,[BW25113_RS01300] |
| * | * | ÷ | NZ_CP009273 | 356980 | 357574 | 595 | 4 [2] | [1] 5 | [lacA] | [lacA] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 19796 = | NA (NA) | 125 (4.020) | 58/168 | 0.0 | 82.2% | intergenic (‑1/+15) | BW25113_RS25960/BW25113_RS00100 | fimbrial family protein/IS1‑like element IS1A family transposase |
| ? | NZ_CP009273 | = 54744 | 27 (0.870) | intergenic (‑42/+11) | surA/lptD | peptidylprolyl isomerase SurA/LPS assembly protein LptD | |||||
| * | ? | NZ_CP009273 | 222376 = | NA (NA) | 3 (0.110) | 3/154 | 2.3 | NA | noncoding (131/2904 nt) | BW25113_RS01025 | 23S ribosomal RNA |
| ? | NZ_CP009273 | 222394 = | NA (NA) | noncoding (149/2904 nt) | BW25113_RS01025 | 23S ribosomal RNA | |||||
| * | ? | NZ_CP009273 | = 254374 | 0 (0.000) | 44 (1.430) | 21/166 | 0.3 | 100% | coding (59/402 nt) | crl | sigma factor‑binding protein Crl |
| ? | NZ_CP009273 | 269667 = | NA (NA) | intergenic (+3/+145) | ykfC/BW25113_RS01325 | reverse transcriptase domain‑containing protein/IS5‑like element IS5 family transposase | |||||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 55 (1.770) | 31/168 | 0.1 | 56.1% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 43 (1.380) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 15 (0.480) | 19 (0.760) | 15/136 | 0.4 | 71.5% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | 1205075 = | 3 (0.120) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1391494 | NA (NA) | 16 (0.520) | 7/166 | 1.4 | 94.2% | intergenic (+145/‑128) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | 1972747 = | 1 (0.030) | intergenic (‑293/‑487) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC | |||||
| * | ? | NZ_CP009273 | = 1972751 | 1 (0.030) | 38 (1.220) | 26/168 | 0.1 | 97.4% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
| * | ? | NZ_CP009273 | 4532499 = | 12 (0.390) | 19 (0.680) | 10/150 | 0.9 | 45.9% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | 4532813 = | 34 (1.230) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
| * | ? | NZ_CP009273 | = 4532507 | 12 (0.390) | 17 (0.610) | 13/150 | 0.6 | 43.2% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | = 4532803 | 34 (1.230) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||