breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutation
evidence position mutation annotation gene description
MC JC 2,399,465 Δ7 bp coding (650‑656/939 nt) lrhA ← transcriptional regulator LrhA

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 235043 235112 70 7 [6] [6] 7 BW25113_RS01095 hypothetical protein
* * ÷ NZ_CP009273 356981 357568 588 17 [0] [5] 8 lacA galactoside O‑acetyltransferase
* * ÷ NZ_CP009273 578902 579154 253 7 [5] [6] 7 [appY] [appY]
* * ÷ NZ_CP009273 716390 716533 144 7 [6] [5] 10 [kdpE] [kdpE]
* * ÷ NZ_CP009273 1164345 1164458 114 8 [6] [5] 9 comR/bhsA TetR family copper‑responsive transcriptional repressor ComR/multiple stress resistance protein BhsA
* * ÷ NZ_CP009273 1431294 1431366 73 7 [6] [5] 8 ompN/nifJ porin OmpN/pyruvate:ferredoxin (flavodoxin) oxidoreductase
* * ÷ NZ_CP009273 1524311 1524427 117 8 [5] [6] 8 [BW25113_RS26145] [BW25113_RS26145]
* * ÷ NZ_CP009273 1807329 1807562 234 8 [6] [6] 7 [BW25113_RS09050] [BW25113_RS09050]
* * ÷ NZ_CP009273 1888048 1888129 82 8 [5] [6] 12 yoaB/yoaC RidA family protein/DUF1889 family protein
* * ÷ NZ_CP009273 1940362 1940433 72 7 [6] [5] 8 [yobI] [yobI]
* * ÷ NZ_CP009273 2027305 2027448 144 7 [6] [5] 7 drpB/ompC cell division protein DrpB/porin OmpC
* * ÷ NZ_CP009273 2767751 2767811 61 10 [0] [5] 7 BW25113_RS13770 hypothetical protein
* * ÷ NZ_CP009273 2897103 2897225 123 7 [6] [3] 7 ygcE/queE FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE
* * ÷ NZ_CP009273 3262530 3262690 161 7 [6] [5] 7 yhaC YhaC family protein
* * ÷ NZ_CP009273 3751289 3751371 83 8 [6] [5] 9 yiaY/selB L‑threonine dehydrogenase/selenocysteine‑specific translation elongation factor
* * ÷ NZ_CP009273 3792561 3792681 121 8 [6] [4] 7 [waaU] [waaU]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 360104 =NA (NA)281 (4.360) 56/166 0.0 NA intergenic (‑35/+251) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
?NZ_CP009273 = 360286 NA (NA)intergenic (‑217/+69) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
* ? NZ_CP009273 1203246 =28 (0.430)22 (0.420) 16/134 0.9 52.0% coding (290/630 nt) BW25113_RS05990 hypothetical protein
?NZ_CP009273 1205075 = 18 (0.350)coding (40/540 nt) BW25113_RS06005 phage tail protein
* ? NZ_CP009273 = 120326128 (0.430)10 (0.190) 9/134 1.7 33.0% coding (305/630 nt) BW25113_RS05990 hypothetical protein
?NZ_CP009273 = 1205058 18 (0.350)coding (57/540 nt) BW25113_RS06005 phage tail protein
* ? NZ_CP009273 = 197275113 (0.200)16 (0.250) 7/166 2.6 55.2% intergenic (‑297/‑483) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
?NZ_CP009273 = 2283592 NA (NA)intergenic (‑68/‑387) BW25113_RS11435/narP IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP
* ? NZ_CP009273 4532499 =2 (0.030)7 (0.120) 6/148 2.6 29.9% intergenic (+49/‑433) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
?NZ_CP009273 4532813 = 31 (0.540)intergenic (+363/‑119) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA