mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 859,587 | G→A | A164T (GCA→ACA) | fsa → | fructose‑6‑phosphate aldolase |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| RA | 3,631,337 | G→A | W112* (TGG→TGA) | pitA → | inorganic phosphate transporter PitA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 356952 | 357582 | 631 | 3 [2] | [2] 3 | lacA | lacA |
| * | * | ÷ | NZ_CP009273 | 428507 | 428556 | 50 | 3 [2] | [0] 3 | nrdR | transcriptional regulator NrdR |
| * | * | ÷ | NZ_CP009273 | 671830 | 674585 | 2756 | 36 [0] | [2] 3 | [ybeQ]–[ybeT] | [ybeQ],ybeR,djlB,[ybeT] |
| * | * | ÷ | NZ_CP009273 | 674674 | 675307 | 634 | 3 [2] | [1] 3 | [ybeT]–[ybeU] | [ybeT],[ybeU] |
| * | * | ÷ | NZ_CP009273 | 675379 | 676113 | 735 | 3 [2] | [2] 3 | [ybeU]–[djlC] | [ybeU],[djlC] |
| * | * | ÷ | NZ_CP009273 | 676317 | 677733 | 1417 | 3 [2] | [2] 4 | [djlC]–[hscC] | [djlC],[hscC] |
| * | * | ÷ | NZ_CP009273 | 677824 | 678270 | 447 | 4 [2] | [2] 3 | hscC | molecular chaperone HscC |
| * | * | ÷ | NZ_CP009273 | 678291 | 684418–683304 | 5014–6128 | 3 [1] | [0] 3 | [hscC]–[BW25113_RS03405] | [hscC],rihA,gltL,gltK,gltJ,gltI,[BW25113_RS03405] |
| * | * | ÷ | NZ_CP009273 | 902985 | 903070 | 86 | 3 [2] | [2] 3 | ybjT | SDR family oxidoreductase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 269666 = | NA (NA) | 36 (1.260) | 21/166 | 0.2 | 100% | intergenic (+2/+146) | ykfC/BW25113_RS01325 | reverse transcriptase domain‑containing protein/IS5‑like element IS5 family transposase |
| ? | NZ_CP009273 | = 671829 | 0 (0.000) | coding (175/978 nt) | ybeQ | SEL1‑like repeat protein | |||||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 33 (1.150) | 21/166 | 0.2 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | = 1391494 | NA (NA) | 19 (0.670) | 13/164 | 0.7 | 100% | intergenic (+145/‑128) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | 1972747 = | 0 (0.000) | intergenic (‑293/‑487) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC | |||||
| * | ? | NZ_CP009273 | = 1972751 | 1 (0.030) | 25 (0.870) | 16/166 | 0.4 | 96.2% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
| * | ? | NZ_CP009273 | = 4532507 | 6 (0.210) | 8 (0.310) | 8/148 | 1.1 | 44.0% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | = 4532803 | 15 (0.590) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||