breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutation
evidence position mutation annotation gene description
MC JC 2,399,465 Δ7 bp coding (650‑656/939 nt) lrhA ← transcriptional regulator LrhA

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 80476 80537 62 3 [1] [1] 2 leuL/leuO leu operon leader peptide/transcriptional regulator LeuO
* * ÷ NZ_CP009273 295814 295819 6 4 [1] [0] 2 paoC aldehyde oxidoreductase molybdenum‑binding subunit PaoC
* * ÷ NZ_CP009273 356981 357570 590 5 [0] [0] 2 lacA galactoside O‑acetyltransferase
* * ÷ NZ_CP009273 1524169 1524172 4 3 [1] [0] 2 BW25113_RS07645 RHS repeat protein
* * ÷ NZ_CP009273 1524312 1524401 90 3 [1] [1] 2 [BW25113_RS26145] [BW25113_RS26145]
* * ÷ NZ_CP009273 1633286 1633295 10 2 [0] [1] 2 [rzpQ] [rzpQ]
* * ÷ NZ_CP009273 1806970 1807008 39 2 [0] [1] 3 BW25113_RS09050 hypothetical protein

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 360104 =NA (NA)53 (1.970) 27/166 0.1 NA intergenic (‑35/+251) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
?NZ_CP009273 = 360286 NA (NA)intergenic (‑217/+69) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
* ? NZ_CP009273 = 1391494NA (NA)16 (0.600) 9/164 1.0 100% intergenic (+145/‑128) BW25113_RS06980/ynaJ IS5‑like element IS5 family transposase/DUF2534 family protein
?NZ_CP009273 1972747 = 0 (0.000)intergenic (‑293/‑487) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
* ? NZ_CP009273 = 19727510 (0.000)24 (0.890) 14/166 0.5 100% intergenic (‑297/‑483) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
?NZ_CP009273 = 2283592 NA (NA)intergenic (‑68/‑387) BW25113_RS11435/narP IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP