breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 49,905 T→G L28R (CTC→CGC)  folA → type 3 dihydrofolate reductase
RA 1,909,799 C→T intergenic (‑8/+89) proQ ← / ← msrC RNA chaperone ProQ/L‑methionine (R)‑S‑oxide reductase
MC JC 2,399,465 Δ7 bp coding (650‑656/939 nt) lrhA ← transcriptional regulator LrhA
RA 3,754,231 G→T R127S (CGC→AGC)  selA ← L‑seryl‑tRNA(Sec) selenium transferase

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 356981 357586 606 2 [0] [0] 2 [lacA] [lacA]
* * ÷ NZ_CP009273 1070853 1070912 60 2 [1] [1] 3 putA trifunctional transcriptional regulator/proline dehydrogenase/L‑glutamate gamma‑semialdehyde dehydrogenase
* * ÷ NZ_CP009273 1137505 1137525 21 3 [1] [1] 2 rne ribonuclease E
* * ÷ NZ_CP009273 1138257 1138275 19 2 [1] [1] 2 rne ribonuclease E
* * ÷ NZ_CP009273 1324128 1324165 38 4 [1] [1] 2 sohB protease SohB
* * ÷ NZ_CP009273 2097509 2097540 32 2 [1] [1] 2 wbbK glycosyltransferase family 1 protein

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 360104 =NA (NA)37 (1.470) 21/170 0.1 NA intergenic (‑35/+251) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
?NZ_CP009273 = 360286 NA (NA)intergenic (‑217/+69) lacZ/BW25113_RS23320 beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
* ? NZ_CP009273 1203246 =1 (0.040)10 (0.490) 10/138 0.5 84.0% coding (290/630 nt) BW25113_RS05990 hypothetical protein
?NZ_CP009273 1205075 = 3 (0.150)coding (40/540 nt) BW25113_RS06005 phage tail protein
* ? NZ_CP009273 = 12032611 (0.040)8 (0.390) 7/138 0.8 80.8% coding (305/630 nt) BW25113_RS05990 hypothetical protein
?NZ_CP009273 = 1205058 3 (0.150)coding (57/540 nt) BW25113_RS06005 phage tail protein
* ? NZ_CP009273 = 1391494NA (NA)9 (0.360) 6/168 1.2 90.1% intergenic (+145/‑128) BW25113_RS06980/ynaJ IS5‑like element IS5 family transposase/DUF2534 family protein
?NZ_CP009273 1972747 = 1 (0.040)intergenic (‑293/‑487) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
* ? NZ_CP009273 = 19727510 (0.000)30 (1.190) 16/170 0.3 100% intergenic (‑297/‑483) flhD/uspC flagellar transcriptional regulator FlhD/universal stress protein UspC
?NZ_CP009273 = 2283592 NA (NA)intergenic (‑68/‑387) BW25113_RS11435/narP IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP
* ? NZ_CP009273 4532499 =12 (0.480)7 (0.310) 7/152 0.9 24.2% intergenic (+49/‑433) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
?NZ_CP009273 4532813 = 33 (1.470)intergenic (+363/‑119) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
* ? NZ_CP009273 = 453250712 (0.480)11 (0.490) 10/152 0.6 33.5% intergenic (+57/‑425) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
?NZ_CP009273 = 4532803 33 (1.470)intergenic (+353/‑129) fimE/fimA type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA