mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,905 | T→G | L28R (CTC→CGC) | folA → | type 3 dihydrofolate reductase |
| RA | 2,269,479 | T→C | V243A (GTC→GCC) | yejE → | ABC transporter permease |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| RA | 3,754,231 | G→T | R127S (CGC→AGC) | selA ← | L‑seryl‑tRNA(Sec) selenium transferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 356981 | 357571 | 591 | 2 [0] | [1] 2 | lacA | galactoside O‑acetyltransferase |
| * | * | ÷ | NZ_CP009273 | 404588 | 404639 | 52 | 2 [1] | [0] 2 | rdgC | recombination‑associated protein RdgC |
| * | * | ÷ | NZ_CP009273 | 428524 | 428556 | 33 | 2 [1] | [1] 2 | nrdR | transcriptional regulator NrdR |
| * | * | ÷ | NZ_CP009273 | 970132 | 970167 | 36 | 4 [0] | [1] 2 | mukF | chromosome partition protein MukF |
| * | * | ÷ | NZ_CP009273 | 1062364 | 1062385 | 22 | 2 [1] | [1] 3 | yccJ | YccJ family protein |
| * | * | ÷ | NZ_CP009273 | 1092013 | 1092014 | 2 | 3 [1] | [0] 2 | BW25113_RS05360 | hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 1764407 | 1764476 | 70 | 2 [1] | [1] 2 | [ydiK] | [ydiK] |
| * | * | ÷ | NZ_CP009273 | 1800515 | 1800538 | 24 | 3 [0] | [1] 2 | ydiY/pfkB | YdiY family protein/6‑phosphofructokinase II |
| * | * | ÷ | NZ_CP009273 | 2112336 | 2112341 | 6 | 5 [0] | [1] 3 | wzxC | colanic acid undecaprenyl disphosphate flippase WzxC |
| * | * | ÷ | NZ_CP009273 | 2132272 | 2132287 | 16 | 2 [1] | [0] 2 | yegH | TerC family protein |
| * | * | ÷ | NZ_CP009273 | 2890329 | 2890339 | 11 | 3 [1] | [1] 2 | ygcS | MFS transporter |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 20563 | NA (NA) | 19 (0.950) | 14/170 | 0.3 | 100% | intergenic (‑55/+252) | BW25113_RS00100/rpsT | IS1‑like element IS1A family transposase/30S ribosomal protein S20 |
| ? | NZ_CP009273 | 481365 = | 0 (0.000) | coding (149/648 nt) | acrR | multidrug efflux transporter transcriptional repressor AcrR | |||||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 30 (1.490) | 17/170 | 0.2 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | = 481372 | 0 (0.000) | 21 (1.050) | 16/170 | 0.2 | 100% | coding (156/648 nt) | acrR | multidrug efflux transporter transcriptional repressor AcrR |
| ? | NZ_CP009273 | = 1046001 | NA (NA) | intergenic (+15/+418) | BW25113_RS05135/cspH | IS1‑like element IS1D family transposase/cold shock‑like protein CspH | |||||
| * | ? | NZ_CP009273 | = 1972751 | 2 (0.100) | 20 (1.000) | 12/170 | 0.4 | 90.9% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 9 (0.450) | 6/170 | 1.1 | 81.8% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | 3512437 = | 2 (0.100) | intergenic (‑14/+387) | aroK/hofQ | shikimate kinase AroK/DNA uptake porin HofQ | |||||
| * | ? | NZ_CP009273 | = 2283591 | NA (NA) | 13 (0.650) | 10/168 | 0.6 | 92.9% | intergenic (‑67/‑388) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP |
| ? | NZ_CP009273 | = 3512441 | 1 (0.050) | intergenic (‑18/+383) | aroK/hofQ | shikimate kinase AroK/DNA uptake porin HofQ | |||||
| * | ? | NZ_CP009273 | 4532499 = | 6 (0.300) | 7 (0.390) | 7/152 | 0.8 | 42.0% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | 4532813 = | 14 (0.780) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
| * | ? | NZ_CP009273 | = 4532507 | 6 (0.300) | 7 (0.390) | 7/152 | 0.8 | 42.0% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | = 4532803 | 14 (0.780) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||