mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,905 | T→G | L28R (CTC→CGC) | folA → | type 3 dihydrofolate reductase |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| RA | 3,754,231 | G→T | R127S (CGC→AGC) | selA ← | L‑seryl‑tRNA(Sec) selenium transferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 356981 | 357570 | 590 | 3 [0] | [1] 2 | lacA | galactoside O‑acetyltransferase |
| * | * | ÷ | NZ_CP009273 | 428519 | 428550 | 32 | 3 [1] | [1] 2 | nrdR | transcriptional regulator NrdR |
| * | * | ÷ | NZ_CP009273 | 982799 | 982841 | 43 | 2 [0] | [1] 2 | ompF/asnS | porin OmpF/asparagine‑‑tRNA ligase |
| * | * | ÷ | NZ_CP009273 | 2033242 | 2033252 | 11 | 2 [1] | [0] 2 | msrP | protein‑methionine‑sulfoxide reductase catalytic subunit MsrP |
| * | * | ÷ | NZ_CP009273 | 3629106 | 3630184 | 1079 | 41 [0] | [1] 2 | [yhiM]–[yhiN] | [yhiM],[yhiN] |
| * | * | ÷ | NZ_CP009273 | 3630275 | 3631506 | 1232 | 2 [1] | [1] 2 | [yhiN]–[pitA] | [yhiN],[pitA] |
| * | * | ÷ | NZ_CP009273 | 3631608 | 3631758 | 151 | 2 [0] | [1] 2 | pitA | inorganic phosphate transporter PitA |
| * | * | ÷ | NZ_CP009273 | 3631830 | 3631939 | 110 | 2 [1] | [1] 2 | pitA | inorganic phosphate transporter PitA |
| * | * | ÷ | NZ_CP009273 | 3631941 | 3632276 | 336 | 2 [1] | [0] 2 | pitA | inorganic phosphate transporter PitA |
| * | * | ÷ | NZ_CP009273 | 3632340 | 3632507 | 168 | 2 [0] | [1] 2 | [pitA] | [pitA] |
| * | * | ÷ | NZ_CP009273 | 3632579 | 3633122 | 544 | 2 [1] | [1] 2 | uspB | uspB |
| * | * | ÷ | NZ_CP009273 | 3633152 | 3634166 | 1015 | 2 [1] | [1] 2 | uspA–BW25113_RS26230 | uspA,BW25113_RS26225,BW25113_RS26230 |
| * | * | ÷ | NZ_CP009273 | 3634324 | 3634404 | 81 | 2 [1] | [1] 2 | dtpB | dipeptide/tripeptide permease DtpB |
| * | * | ÷ | NZ_CP009273 | 3634495 | 3634776 | 282 | 2 [1] | [0] 2 | dtpB | dipeptide/tripeptide permease DtpB |
| * | * | ÷ | NZ_CP009273 | 3634860 | 3635642 | 783 | 2 [0] | [0] 2 | dtpB | dipeptide/tripeptide permease DtpB |
| * | * | ÷ | NZ_CP009273 | 3635807 | 3637408 | 1602 | 2 [1] | [1] 2 | [rsmJ]–[prlC] | [rsmJ],[prlC] |
| * | * | ÷ | NZ_CP009273 | 3637457 | 3637873 | 417 | 2 [1] | [1] 2 | prlC | oligopeptidase A |
| * | * | ÷ | NZ_CP009273 | 3637896 | 3638193 | 298 | 2 [1] | [1] 2 | prlC | oligopeptidase A |
| * | * | ÷ | NZ_CP009273 | 3638284 | 3638644 | 361 | 2 [1] | [1] 2 | [prlC] | [prlC] |
| * | * | ÷ | NZ_CP009273 | 3638650 | 3639528 | 879 | 2 [1] | [1] 2 | [rlmJ] | [rlmJ] |
| * | * | ÷ | NZ_CP009273 | 3639543 | 3640180 | 638 | 2 [1] | [1] 2 | [rlmJ]–[gorA] | [rlmJ],[gorA] |
| * | * | ÷ | NZ_CP009273 | 3640209 | 3641652 | 1444 | 2 [1] | [1] 2 | [gorA]–dinQ | [gorA],dinQ |
| * | * | ÷ | NZ_CP009273 | 3641691 | 3642775 | 1085 | 2 [1] | [1] 2 | arsR–[arsB] | arsR,[arsB] |
| * | * | ÷ | NZ_CP009273 | 3642789 | 3644091 | 1303 | 2 [1] | [1] 2 | [arsB]–arsC | [arsB],arsC |
| * | * | ÷ | NZ_CP009273 | 3644279 | 3644607 | 329 | 2 [1] | [1] 2 | arsC/BW25113_RS18155 | glutaredoxin‑dependent arsenate reductase/hypothetical protein |
| * | * | ÷ | NZ_CP009273 | 3644782 | 3646525–3645392 | 611–1744 | 2 [0] | [1] 2 | [BW25113_RS18155]–BW25113_RS18160 | [BW25113_RS18155],BW25113_RS18160 |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 55 (2.040) | 27/172 | 0.1 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 6 (0.220) | 15 (0.690) | 11/140 | 0.5 | 77.2% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | 1205075 = | 4 (0.180) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 6 (0.220) | 18 (0.820) | 12/140 | 0.4 | 80.2% | coding (305/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | = 1205058 | 4 (0.180) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1391494 | NA (NA) | 21 (0.790) | 11/170 | 0.7 | 95.5% | intergenic (+145/‑128) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | 1972747 = | 1 (0.040) | intergenic (‑293/‑487) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC | |||||
| * | ? | NZ_CP009273 | = 1972751 | 2 (0.070) | 33 (1.230) | 22/172 | 0.2 | 94.3% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
| * | ? | NZ_CP009273 | = 3629105 | 0 (0.000) | 38 (1.430) | 20/170 | 0.2 | 100% | coding (905/1053 nt) | yhiM | DUF2776 domain‑containing protein |
| ? | NZ_CP009273 | 3645397 = | NA (NA) | pseudogene (747/747 nt) | BW25113_RS18155 | hypothetical protein | |||||
| * | ? | NZ_CP009273 | 4532499 = | 10 (0.370) | 9 (0.370) | 7/154 | 1.1 | 34.6% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | 4532813 = | 25 (1.040) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||