breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 100,801 G→T V13L (GTG→TTG)  murC → UDP‑N‑acetylmuramate‑‑L‑alanine ligase
MC JC 257,908 Δ776 bp insB9[crl] insB9, insA9, [crl]
RA 1,212,088 (C)8→9 intergenic (‑85/+172) iraM ← / ← ymgK anti‑adaptor protein IraM, inhibitor of sigma(S) proteolysis/protein YmgK
RA 1,529,175 T→C pseudogene (1286/2049 nt) rhsE → RhsE protein in rhs element
RA 1,529,180 T→C pseudogene (1291/2049 nt) rhsE → RhsE protein in rhs element
RA 1,529,185 C→T pseudogene (1296/2049 nt) rhsE → RhsE protein in rhs element
RA 1,529,203 C→A pseudogene (1314/2049 nt) rhsE → RhsE protein in rhs element
RA 1,529,218 C→T pseudogene (1329/2049 nt) rhsE → RhsE protein in rhs element
MC JC 1,978,503 Δ776 bp insB‑5insA‑5 insB‑5, insA‑5
RA 2,173,363 Δ2 bp pseudogene (915‑916/1358 nt) gatC ← galactitol‑specific PTS enzyme IIC component
JC 2,257,595 (TCAGCT)2→1 coding (768‑773/939 nt) psuG ← pseudouridine‑5'‑phosphate glycosidase
RA 2,917,484 +C coding (2428/2757 nt) barA → sensory histidine kinase BarA
JC 3,497,416 Δ13 bp coding (414‑426/807 nt) nirC → nitrite transporter NirC
RA 3,560,455 +G pseudogene (151/758 nt) glpR ← DNA‑binding transcriptional repressor GlpR
RA 3,815,810 Δ1 bp intergenic (‑42/+53) pyrE ← / ← rph orotate phosphoribosyltransferase/truncated RNase PH
RA 4,183,214 C→T T657I (ACC→ATC)  rpoB → RNA polymerase subunit beta
RA 4,296,381 +GC intergenic (+587/+55) gltP → / ← yjcO glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 12994980 (0.000)101 (0.470) 61/482 2.9 100% intergenic (+253/‑33) ychE/insH21 putative inner membrane protein/IS5 transposase and trans‑activator
?NC_000913 1300698 = 0 (0.000)intergenic (+151/‑484) insH21/oppA IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein