breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
RA | 100,801 | G→T | V13L (GTG→TTG) | murC → | UDP‑N‑acetylmuramate‑‑L‑alanine ligase |
MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
RA | 1,212,088 | (C)8→9 | intergenic (‑85/+172) | iraM ← / ← ymgK | anti‑adaptor protein IraM, inhibitor of sigma(S) proteolysis/protein YmgK |
RA | 1,529,175 | T→C | pseudogene (1286/2049 nt) | rhsE → | RhsE protein in rhs element |
RA | 1,529,180 | T→C | pseudogene (1291/2049 nt) | rhsE → | RhsE protein in rhs element |
RA | 1,529,185 | C→T | pseudogene (1296/2049 nt) | rhsE → | RhsE protein in rhs element |
RA | 1,529,203 | C→A | pseudogene (1314/2049 nt) | rhsE → | RhsE protein in rhs element |
RA | 1,529,218 | C→T | pseudogene (1329/2049 nt) | rhsE → | RhsE protein in rhs element |
MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
JC | 2,257,595 | (TCAGCT)2→1 | coding (768‑773/939 nt) | psuG ← | pseudouridine‑5'‑phosphate glycosidase |
RA | 2,917,484 | +C | coding (2428/2757 nt) | barA → | sensory histidine kinase BarA |
JC | 3,497,416 | Δ13 bp | coding (414‑426/807 nt) | nirC → | nitrite transporter NirC |
RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
RA | 3,815,810 | Δ1 bp | intergenic (‑42/+53) | pyrE ← / ← rph | orotate phosphoribosyltransferase/truncated RNase PH |
RA | 4,183,214 | C→T | T657I (ACC→ATC) | rpoB → | RNA polymerase subunit beta |
RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 1299498 | 0 (0.000) | 101 (0.470) | 61/482 | 2.9 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein |