breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | ||||||
---|---|---|---|---|---|---|
evidence | position | mutation | freq | annotation | gene | description |
MC JC | 257,908 | Δ776 bp | 100% | insB9–[crl] | insB9, insA9, [crl] | |
RA | 1,529,218 | C→T | 6.2% | pseudogene (1329/2049 nt) | rhsE → | RhsE protein in rhs element |
RA | 1,647,187 | T→C | 5.7% | D46G (GAT→GGT) | ydfW ← | Qin prophage; uncharacterized protein YdfW |
MC JC | 1,978,503 | Δ776 bp | 100% | insB‑5–insA‑5 | insB‑5, insA‑5 | |
RA | 2,173,361 | Δ2 bp | 100% | pseudogene (917‑918/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
RA | 2,304,988 | T→C | 7.3% | intergenic (+595/+120) | eco → / ← mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
RA | 2,305,013 | A→G | 8.2% | intergenic (+620/+95) | eco → / ← mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
RA | 2,464,380 | Δ1 bp | 5.1% | coding (628/756 nt) | mlaA ← | intermembrane phospholipid transport system ‑ outer membrane lipoprotein MlaA |
RA | 3,560,455:1 | +G | 100% | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
RA | 3,875,525 | G→T | 10.5% | V30F (GTT→TTT) | yidX → | putative lipoprotein YidX |
RA | 3,876,895 | T→G | 7.2% | T20P (ACC→CCC) | yidA ← | sugar phosphatase YidA |
RA | 4,184,809 | G→T | 74.1% | G1189C (GGT→TGT) | rpoB → | RNA polymerase subunit beta |
RA | 4,185,540 | C→T | 15.6% | P64L (CCG→CTG) | rpoC → | RNA polymerase subunit beta' |
RA | 4,296,060 | C→T | 10.5% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
RA | 4,296,190 | A→G | 14.9% | intergenic (+396/+246) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
RA | 4,296,191 | A→C | 14.1% | intergenic (+397/+245) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
RA | 4,296,268 | T→C | 15.8% | intergenic (+474/+168) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
RA | 4,296,286 | C→T | 10.4% | intergenic (+492/+150) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
RA | 4,326,088 | T→G | 5.4% | intergenic (‑347/+311) | yjdN ← / ← yjdM | conserved protein YjdN/conserved protein YjdM |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 1207790 = | 74 (0.550) | 46 (0.370) | 30/454 | NT | 39.8% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
? | NC_000913 | 1209619 = | 70 (0.560) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
* | ? | NC_000913 | = 1207805 | 75 (0.560) | 50 (0.400) | 39/454 | NT | 41.7% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
? | NC_000913 | = 1209602 | 70 (0.560) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
* | ? | NC_000913 | = 1299498 | 0 (0.000) | 49 (0.370) | 41/478 | NT | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
* | ? | NC_000913 | = 3427065 | 23 (0.170) | 6 (0.050) | 6/468 | NT | 9.2% | intergenic (‑32/+11) | alaU/ileU | tRNA‑Ala/tRNA‑Ile |
? | NC_000913 | 4037225 = | 96 (0.740) | intergenic (+8/‑35) | ileT/alaT | tRNA‑Ile/tRNA‑Ala |