mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 92,976 | A→G | 5.4% | S522G (AGT→GGT) | ftsI → | transpeptidase involved in septal peptidoglycan synthesis; penicillin‑binding protein 3 |
| RA | 220,914 | G→T | 5.5% | F5L (TTC→TTA) | metQ ← | DL‑methionine transporter subunit |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 349,717 | T→C | 10.0% | intergenic (+145/‑295) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 457,671 | A→G | 100% | E82E (GAA→GAG) | clpX → | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease |
| RA | 521,180 | A→T | 6.0% | A255A (GCA→GCT) | ybbP → | putative ABC transporter permease |
| RA | 525,183 | C→T | 6.2% | Y641Y (TAC→TAT) | rhsD → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 556,389 | A→G | 6.1% | F55F (TTT→TTC) | ybcI ← | DUF457 family inner membrane protein |
| RA | 602,046 | C→G | 5.0% | L30V (CTG→GTG) | pheP → | phenylalanine transporter |
| RA | 624,659 | A→T | 7.7% | intergenic (‑149/‑226) | fepB ← / → entC | ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1 |
| RA | 624,664 | G→T | 7.0% | intergenic (‑154/‑221) | fepB ← / → entC | ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1 |
| RA | 624,665 | G→C | 6.7% | intergenic (‑155/‑220) | fepB ← / → entC | ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1 |
| RA | 624,666 | A→C | 6.8% | intergenic (‑156/‑219) | fepB ← / → entC | ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1 |
| RA | 699,559 | A→G | 6.4% | intergenic (‑382/+15) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 772,824 | T→G | 8.6% | V456G (GTG→GGG) | cydA → | cytochrome d terminal oxidase, subunit I |
| RA | 796,232 | A→T | 5.6% | Q124L (CAG→CTG) | modB → | molybdate ABC transporter permease; chlorate resistance protein |
| RA | 826,248 | G→A | 6.6% | S335S (AGC→AGT) | ybhS ← | putative ABC transporter permease |
| RA | 837,636 | C→T | 5.1% | intergenic (+200/+29) | ybiC → / ← ybiJ | putative dehydrogenase/DUF1471 family putative periplasmic protein |
| RA | 854,127 | G→A | 6.0% | A161T (GCC→ACC) | ybiR → | putative transporter |
| RA | 916,431 | A→T | 7.1% | intergenic (‑384/‑42) | aqpZ ← / → ybjD | aquaporin Z/putative OLD family ATP‑dependent endonuclease; DUF2813 family protein |
| RA | 931,428 | A→G | 5.2% | L208P (CTG→CCG) | trxB ← | thioredoxin reductase, FAD/NAD(P)‑binding |
| RA | 1,084,237 | A→G | 10.2% | K288E (AAA→GAA) | efeB → | deferrrochelatase, periplasmic |
| RA | 1,152,558 | G→A | 6.1% | R207H (CGT→CAT) | fabF → | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| RA | 1,179,082 | G→A | 6.8% | A164T (GCG→ACG) | nagK → | N‑acetyl‑D‑glucosamine kinase |
| RA | 1,254,942 | G→A | 6.8% | S337S (TCC→TCT) | ycgV ← | putative adhesin |
| RA | 1,262,561 | C→T | 5.7% | G106D (GGT→GAT) | ispE ← | 4‑diphosphocytidyl‑2‑C‑methylerythritol kinase |
| RA | 1,269,655 | G→A | 7.7% | intergenic (+266/+48) | rdlA → / ← ldrB | sRNA antisense regulator affects LdrA translation; proposed addiction module in LDR‑A repeat, with toxic peptide LdrA/toxic polypeptide, small |
| RA | 1,291,117 | G→T | 7.0% | Q292H (CAG→CAT) | rssB → | PcnB‑degradosome interaction factor; response regulator |
| RA | 1,293,009 | G→A | 5.9% | intergenic (‑87/‑518) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| JC JC | 1,293,032 | IS1 (–) +8 bp | 100% | intergenic (‑110/‑488) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,322,453 | G→A | 8.0% | S165L (TCA→TTA) | trpE ← | component I of anthranilate synthase |
| RA | 1,364,708 | C→T | 5.5% | A159A (GCC→GCT) | puuB → | gamma‑glutamylputrescine oxidoreductase |
| RA | 1,368,691 | G→A | 5.2% | A205T (GCA→ACA) | pspA → | regulatory protein for phage‑shock‑protein operon |
| RA | 1,391,460 | G→T | 7.4% | R132S (CGC→AGC) | ycjY ← | S9 homolog non‑peptidase family protein |
| RA | 1,391,463 | G→A | 7.4% | R131C (CGC→TGC) | ycjY ← | S9 homolog non‑peptidase family protein |
| RA | 1,412,011 | G→T | 7.6% | R409R (CGG→AGG) | intR ← | Rac prophage; integrase |
| RA | 1,515,527 | C→T | 5.8% | L256L (CTA→TTA) | ydcV → | putative ABC transporter permease |
| RA | 1,625,304 | Δ1 bp | 6.8% | intergenic (+13/+31) | ydeJ → / ← dcp | inactive PncC family protein/dipeptidyl carboxypeptidase II |
| RA | 1,625,306 | C→A | 6.8% | intergenic (+15/+29) | ydeJ → / ← dcp | inactive PncC family protein/dipeptidyl carboxypeptidase II |
| RA | 1,625,312:1 | +G | 6.7% | intergenic (+21/+23) | ydeJ → / ← dcp | inactive PncC family protein/dipeptidyl carboxypeptidase II |
| RA | 1,625,313 | T→C | 6.7% | intergenic (+22/+22) | ydeJ → / ← dcp | inactive PncC family protein/dipeptidyl carboxypeptidase II |
| RA | 1,708,854 | C→G | 29.2% | Q646E (CAA→GAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,720,240 | A→T | 9.8% | N122I (AAT→ATT) | slyB → | outer membrane lipoprotein |
| RA | 1,724,298 | T→C | 8.5% | N120D (AAT→GAT) | sodC ← | superoxide dismutase, Cu, Zn, periplasmic |
| RA | 1,752,392 | T→C | 7.5% | Q480R (CAG→CGG) | ydhV ← | putative oxidoreductase subunit |
| RA | 1,794,441 | C→T | 6.0% | A238T (GCG→ACG) | btuC ← | vitamin B12 ABC transporter permease |
| RA | 1,815,269 | A→T | 5.6% | N468I (AAC→ATC) | katE → | catalase HPII, heme d‑containing |
| RA | 1,835,659 | G→A | 6.5% | G49S (GGC→AGC) | ynjA → | carboxymuconolactone decarboxylase family protein |
| RA | 1,865,682 | G→C | 7.2% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,900,167 | C→T | 6.5% | S473S (TCG→TCA) | yoaE ← | putative membrane protein/conserved protein |
| RA | 1,934,587 | T→C | 5.9% | L6L (TTA→TTG) | edd ← | 6‑phosphogluconate dehydratase |
| RA | 1,934,590 | C→T | 70.0% | L5L (TTG→TTA) | edd ← | 6‑phosphogluconate dehydratase |
| RA | 1,935,650 | C→T | 6.5% | R222H (CGC→CAC) | zwf ← | glucose‑6‑phosphate 1‑dehydrogenase |
| RA | 1,936,605 | T→C | 5.1% | intergenic (‑291/‑47) | zwf ← / → yebK | glucose‑6‑phosphate 1‑dehydrogenase/putative DNA‑binding transcriptional regulator |
| RA | 1,957,139 | A→G | 5.1% | S332P (TCC→CCC) | torY ← | TMAO reductase III (TorYZ), cytochrome c‑type subunit |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 2,073,397 | C→T | 5.6% | A620V (GCA→GTA) | flu → | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| RA | 2,100,944 | T→C | 6.4% | I109V (ATT→GTT) | gnd ← | 6‑phosphogluconate dehydrogenase, decarboxylating |
| RA | 2,120,767 | T→C | 6.9% | D263G (GAC→GGC) | wcaJ ← | colanic biosynthesis UDP‑glucose lipid carrier transferase |
| RA | 2,122,707 | G→A | 8.9% | G91G (GGC→GGT) | cpsG ← | phosphomannomutase |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,186,509 | T→A | 7.0% | I198N (ATT→AAT) | rcnA → | membrane protein conferring nickel and cobalt resistance |
| RA | 2,196,608 | T→C | 5.5% | pseudogene (135/2847 nt) | yehH → | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
| RA | 2,199,077 | C→T | 6.1% | pseudogene (2604/2847 nt) | yehH → | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
| RA | 2,229,172 | C→T | 5.5% | intergenic (+107/+266) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| RA | 2,232,174 | G→C | 5.1% | A111P (GCC→CCC) | cdd → | cytidine/deoxycytidine deaminase |
| RA | 2,295,828 | T→C | 5.3% | I165V (ATT→GTT) | ccmC ← | heme export ABC transporter permease; CcmE‑interacting protein |
| RA | 2,305,085 | A→G | 8.5% | intergenic (+692/+23) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,086 | C→G | 8.6% | intergenic (+693/+22) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,087 | C→T | 8.6% | intergenic (+694/+21) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,338,129 | G→A | 5.2% | A431V (GCT→GTT) | gyrA ← | DNA gyrase (type II topoisomerase), subunit A |
| RA | 2,394,256 | T→C | 5.6% | Y264C (TAC→TGC) | nuoL ← | NADH:ubiquinone oxidoreductase, membrane subunit L |
| RA | 2,441,822 | T→A | 5.0% | V20D (GTT→GAT) | mnmC → | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| RA | 2,462,677 | A→T | 5.6% | intergenic (+31/‑335) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,462,678 | T→A | 5.5% | intergenic (+32/‑334) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,462,679 | A→T | 5.8% | intergenic (+33/‑333) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,495,914 | G→A | 5.2% | L90L (CTG→CTA) | lpxP → | palmitoleoyl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| RA | 2,512,045 | T→C | 7.1% | Q221R (CAG→CGG) | mntH ← | manganese/divalent cation transporter |
| RA | 2,560,996 | G→T | 18.5% | intergenic (+98/‑372) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,579,905 | T→C | 5.3% | R90R (CGT→CGC) | tktB → | transketolase 2, thiamine triphosphate‑binding |
| RA | 2,644,260 | A→G | 5.7% | P8P (CCT→CCC) | rlmN ← | dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent |
| RA | 2,704,304 | A→G | 7.9% | intergenic (‑241/+31) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,704,306 | A→T | 7.8% | intergenic (‑243/+29) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,704,308 | C→T | 7.9% | intergenic (‑245/+27) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,712,011 | T→C | 6.0% | L531P (CTT→CCT) | nadB → | quinolinate synthase, L‑aspartate oxidase (B protein) subunit |
| RA | 2,800,515 | C→A | 5.8% | intergenic (+40/‑208) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,800,517 | T→A | 5.7% | intergenic (+42/‑206) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,838,680 | A→G | 6.0% | I195I (ATT→ATC) | ascG ← | asc operon transcriptional repressor; prpBC operon repressor |
| RA | 2,840,650 | C→A | 7.3% | P376Q (CCG→CAG) | ascF → | cellobiose/arbutin/salicin‑specific PTS enzymes, IIB and IC components |
| RA | 2,945,005 | A→G | 5.6% | intergenic (+20/+31) | csdE → / ← tcdA | CsdA‑binding activator; Fe‑S protein/tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA |
| RA | 2,945,011 | T→C | 5.3% | intergenic (+26/+25) | csdE → / ← tcdA | CsdA‑binding activator; Fe‑S protein/tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA |
| RA | 2,945,012 | T→G | 5.3% | intergenic (+27/+24) | csdE → / ← tcdA | CsdA‑binding activator; Fe‑S protein/tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA |
| RA | 2,945,013 | C→A | 5.3% | intergenic (+28/+23) | csdE → / ← tcdA | CsdA‑binding activator; Fe‑S protein/tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA |
| RA | 2,945,014 | G→A | 5.2% | intergenic (+29/+22) | csdE → / ← tcdA | CsdA‑binding activator; Fe‑S protein/tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA |
| RA | 2,945,020 | C→T | 5.1% | intergenic (+35/+16) | csdE → / ← tcdA | CsdA‑binding activator; Fe‑S protein/tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA |
| RA | 3,019,431 | T→A | 5.1% | W91R (TGG→AGG) | ssnA → | putative chlorohydrolase/aminohydrolase |
| RA | 3,020,511 | C→G | 5.0% | intergenic (+22/‑29) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,028,944 | Δ1 bp | 5.1% | coding (69/489 nt) | ygfS ← | putative 4Fe‑4S ferredoxin‑type oxidoreductase subunit |
| RA | 3,072,900 | C→T | 6.4% | L264L (CTG→CTA) | epd ← | D‑erythrose 4‑phosphate dehydrogenase |
| RA | 3,223,210 | G→A | 5.2% | W193* (TGG→TAG) | ebgA → | evolved beta‑D‑galactosidase, alpha subunit |
| RA | 3,372,447 | A→G | 5.2% | L43P (CTC→CCC) | nanT ← | sialic acid transporter |
| RA | 3,392,364 | G→A | 5.4% | intergenic (‑336/+94) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,601,632 | A→G | 5.2% | F152S (TTC→TCC) | ftsX ← | putative ABC transporter permease |
| RA | 3,618,826 | A→C | 7.3% | D80A (GAC→GCC) | nikR → | transcriptional repressor, Ni‑binding |
| RA | 3,657,599 | T→A | 5.0% | intergenic (+32/+387) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,601 | G→C | 5.1% | intergenic (+34/+385) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,603 | T→A | 5.1% | intergenic (+36/+383) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,686,552 | T→G | 5.2% | R874R (CGA→CGC) | bcsC ← | cellulose synthase subunit |
| RA | 3,741,089 | G→T | 5.3% | intergenic (+131/+20) | avtA → / ← ysaA | valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase/putative hydrogenase, 4Fe‑4S ferredoxin‑type component |
| RA | 3,741,091 | G→T | 6.0% | intergenic (+133/+18) | avtA → / ← ysaA | valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase/putative hydrogenase, 4Fe‑4S ferredoxin‑type component |
| RA | 3,741,092 | A→C | 5.3% | intergenic (+134/+17) | avtA → / ← ysaA | valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase/putative hydrogenase, 4Fe‑4S ferredoxin‑type component |
| RA | 3,781,051 | C→G | 6.2% | intergenic (+34/‑164) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| MC JC | 3,815,859 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| MC JC | 4,001,645 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,121,959 | T→G | 5.1% | N110T (AAC→ACC) | hslV ← | peptidase component of the HslUV protease |
| RA | 4,153,570 | G→A | 7.6% | intergenic (‑472/+126) | ppc ← / ← argE | phosphoenolpyruvate carboxylase/acetylornithine deacetylase |
| RA | 4,184,543 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,296,060 | C→T | 32.7% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| JC JC | 4,310,417 | IS2 (–) +5 bp | 100% | coding (560‑564/1533 nt) | alsA ← | D‑allose ABC transporter ATPase |
| RA | 4,472,434 | G→A | 5.4% | R34* (CGA→TGA) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,591,498 | T→A | 5.1% | intergenic (‑219/‑159) | yjiY ← / → tsr | putative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor |
| RA | 4,614,626 | C→A | 5.5% | intergenic (+366/+54) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2066284–2066600 | 2066600 | 1–317 | 21 [19] | [19] 22 | [insH1] | [insH1] |
| * | * | ÷ | NC_000913 | 3423755–3424234 | 3424530–3424238 | 5–776 | 22 [20] | [19] 21 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| * | * | ÷ | NC_000913 | 3514369 | 3515073 | 705 | 21 [20] | [20] 21 | [gph]–rpe | [gph],rpe |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 225078 = | NA (NA) | 5 (0.060) | 5/246 | NT | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225100 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 5 (0.060) | 4/242 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 341335 | 57 (0.680) | 4 (0.050) | 4/250 | NT | 6.3% | coding (211/1383 nt) | yahJ | putative metallo‑dependent hydrolase domain deaminase |
| ? | NC_000913 | = 341358 | 65 (0.810) | coding (234/1383 nt) | yahJ | putative metallo‑dependent hydrolase domain deaminase | |||||
| * | ? | NC_000913 | 705533 = | 66 (0.790) | 4 (0.050) | 4/250 | NT | 5.8% | coding (1590/1947 nt) | nagE | N‑acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components |
| ? | NC_000913 | 705566 = | 66 (0.820) | coding (1623/1947 nt) | nagE | N‑acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components | |||||
| * | ? | NC_000913 | 1105952 = | 54 (0.650) | 4 (0.050) | 4/242 | NT | 7.7% | coding (133/534 nt) | ymdB | O‑acetyl‑ADP‑ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit |
| ? | NC_000913 | 1105994 = | 45 (0.580) | coding (175/534 nt) | ymdB | O‑acetyl‑ADP‑ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit | |||||
| * | ? | NC_000913 | 1207790 = | 25 (0.300) | 34 (0.470) | 27/228 | NT | 58.7% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 26 (0.360) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 23 (0.280) | 27 (0.370) | 26/228 | NT | 53.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 26 (0.360) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1312264 = | 71 (0.850) | 4 (0.050) | 4/240 | NT | 5.9% | intergenic (‑18/+87) | yciA/yciB | acyl‑CoA esterase/IspA family inner membrane protein |
| ? | NC_000913 | 1312301 = | 63 (0.820) | intergenic (‑55/+50) | yciA/yciB | acyl‑CoA esterase/IspA family inner membrane protein | |||||
| * | ? | NC_000913 | 1411899 = | 60 (0.720) | 5 (0.080) | 5/208 | NT | 8.6% | coding (50/936 nt) | ttcA | tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| ? | NC_000913 | = 1434958 | 59 (0.890) | pseudogene (51/51 nt) | ttcC | pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1860993 = | 62 (0.740) | 3 (0.040) | 3/256 | NT | 5.5% | coding (340/1077 nt) | ydjL | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
| ? | NC_000913 | 1861039 = | 43 (0.520) | coding (294/1077 nt) | ydjL | putative Zn‑dependent NAD(P)‑binding oxidoreductase | |||||
| * | ? | NC_000913 | = 2290113 | NA (NA) | 7 (0.080) | 7/258 | NT | 6.8% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 3578758 = | 96 (1.160) | intergenic (‑32/+192) | gntR/yhhW | d‑gluconate inducible gluconate regulon transcriptional repressor/quercetinase activity in vitro | |||||
| * | ? | NC_000913 | = 3392342 | NA (NA) | 4 (0.050) +CTACAAACG |
4/242 | NT | NA | noncoding (267/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences |
| ? | NC_000913 | = 3392393 | NA (NA) | intergenic (‑365/+65) | tldD/yhdP | putative peptidase/DUF3971‑AsmA2 domains protein | |||||
| * | ? | NC_000913 | 3740964 = | NA (NA) | 6 (0.080) | 4/246 | NT | NA | noncoding (1/98 nt) | RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 3740989 = | NA (NA) | noncoding (26/98 nt) | RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 4037399 = | NA (NA) | 12 (0.150) | 4/256 | NT | 9.4% | intergenic (+64/‑120) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon |
| ? | NC_000913 | 4168481 = | 117 (1.400) | intergenic (+34/‑160) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon | |||||