Wed Apr  6 10:26:13 2022

/usr/bin/breseq-0.35.4-Linux-x86_64/bin/breseq -j 2 --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -o breseq_processes/0 -r /var/data/NC_000913_3.gb /var/alemutpipe-outputs/good/Plate-2-BOP-27-ACEF-ALE-2-flask-2_S3_L001_R1_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-2-BOP-27-ACEF-ALE-2-flask-2_S3_L001_R2_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-2-BOP-27-ACEF-ALE-2-flask-2_S3_L002_R1_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-2-BOP-27-ACEF-ALE-2-flask-2_S3_L002_R2_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-2-BOP-27-ACEF-ALE-2-flask-2_S3_L003_R1_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-2-BOP-27-ACEF-ALE-2-flask-2_S3_L003_R2_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-2-BOP-27-ACEF-ALE-2-flask-2_S3_L004_R1_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-2-BOP-27-ACEF-ALE-2-flask-2_S3_L004_R2_001.good.fq.gz