breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
---|---|---|---|---|---|
evidence | position | mutation | annotation | gene | description |
RA | 749,566 | C→A | R120L (CGT→CTT) | gltA ← | citrate synthase |
RA | 1,613,342 | T→C | intergenic (‑177/‑35) | marC ← / → marR | UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance |
RA | 4,029,087 | A→T | noncoding (197/1542 nt) | rrsA → | 16S ribosomal RNA of rrnA operon |
RA | 4,625,117 | Δ1 bp | coding (11/870 nt) | rob ← | right oriC‑binding transcriptional activator, AraC family |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | 360104 = | 106 (0.840) | 198 (1.560) | 90/400 | 0.2 | 66.3% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 360286 | 95 (0.750) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
* | ? | CP009273 | 2369303 = | 7 (0.060) | 85 (0.680) | 51/392 | 1.2 | 92.5% | coding (139/963 nt) | menC | O‑succinylbenzoyl‑CoA synthase |
? | CP009273 | = 2509092 | NA (NA) | intergenic (+170/+30) | insL1/yfeA | IS186 transposase/putative diguanylate cyclase | |||||
* | ? | CP009273 | = 2369314 | 2 (0.020) | 120 (0.970) | 75/392 | 0.4 | 98.4% | coding (128/963 nt) | menC | O‑succinylbenzoyl‑CoA synthase |
? | CP009273 | 2507756 = | NA (NA) | intergenic (+33/‑54) | nupC/insL1 | nucleoside (except guanosine) transporter/IS186 transposase |