breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 749,566 C→A R120L (CGT→CTT)  gltA ← citrate synthase
RA 1,613,342 T→C intergenic (‑177/‑35) marC ← / → marR UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance
RA 4,029,087 A→T noncoding (197/1542 nt) rrsA → 16S ribosomal RNA of rrnA operon
RA 4,625,117 Δ1 bp coding (11/870 nt) rob ← right oriC‑binding transcriptional activator, AraC family

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 360104 =106 (0.840)198 (1.560) 90/400 0.2 66.3% intergenic (‑38/+557) lacZ/lacI pseudogene, truncated/DNA‑binding transcriptional repressor
?CP009273 = 360286 95 (0.750)intergenic (‑220/+375) lacZ/lacI pseudogene, truncated/DNA‑binding transcriptional repressor
* ? CP009273 2369303 =7 (0.060)85 (0.680) 51/392 1.2 92.5% coding (139/963 nt) menC O‑succinylbenzoyl‑CoA synthase
?CP009273 = 2509092 NA (NA)intergenic (+170/+30) insL1/yfeA IS186 transposase/putative diguanylate cyclase
* ? CP009273 = 23693142 (0.020)120 (0.970) 75/392 0.4 98.4% coding (128/963 nt) menC O‑succinylbenzoyl‑CoA synthase
?CP009273 2507756 = NA (NA)intergenic (+33/‑54) nupC/insL1 nucleoside (except guanosine) transporter/IS186 transposase