breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 748,772 C→T A385T (GCA→ACA)  gltA ← citrate synthase
MC JC 1,612,767 Δ11 bp coding (389‑399/666 nt) marC ← UPF0056 family inner membrane protein
RA 1,613,342 T→C intergenic (‑177/‑35) marC ← / → marR UPF0056 family inner membrane protein/transcriptional repressor of multiple antibiotic resistance
RA 4,029,087 A→T noncoding (197/1542 nt) rrsA → 16S ribosomal RNA of rrnA operon

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 360104 =57 (1.170)97 (1.990) 59/398 0.0 64.2% intergenic (‑38/+557) lacZ/lacI pseudogene, truncated/DNA‑binding transcriptional repressor
?CP009273 = 360286 51 (1.040)intergenic (‑220/+375) lacZ/lacI pseudogene, truncated/DNA‑binding transcriptional repressor