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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | AM260479 | 160,041 | G→C | G102A (GGG→GCG) | h16_A0146 → | conserved hypothetical protein |
RA | AM260479 | 160,043 | G→C | V103L (GTA→CTA) | h16_A0146 → | conserved hypothetical protein |
RA | AM260479 | 160,050 | +C | coding (314/939 nt) | h16_A0146 → | conserved hypothetical protein |
RA | AM260479 | 208,932 | A→C | H322Q (CAT→CAG) | h16_A0195 ← | Putative GTPase (G3E family) |
RA | AM260479 | 208,953 | A→C | V315V (GTT→GTG) | h16_A0195 ← | Putative GTPase (G3E family) |
RA | AM260479 | 245,288 | T→G | L247V (TTG→GTG) | betA2 → | choline dehydrogenase |
RA | AM260479 | 275,969 | +C | coding (268/558 nt) | h16_A0264 ← | Hypothetical protein |
RA | AM260479 | 342,407 | T→C | L180L (TTG→CTG) | amtB → | ammonium transporter |
RA | AM260479 | 406,488 | G→T | L70I (CTC→ATC) | h16_A0388 ← | ABC‑type transporter, ATPase component: HAAT family |
RA | AM260479 | 500,512 | G→A | W23* (TGG→TAG) | h16_A0473 → | ABC‑type transporter, permease component: PAAT family |
RA | AM260479 | 518,612 | G→C | intergenic (+17/‑48) | h16_A0492 → / → pgam2 | Phospholipid‑binding protein/phosphoglycerate mutase 2 protein |
RA | AM260479 | 547,818 | +C | intergenic (‑10/+27) | glyS ← / ← h16_A0522 | Glycyl‑tRNA synthetase beta subunit/conserved hypothetical protein |
RA | AM260479 | 547,839 | Δ1 bp | intergenic (‑31/+6) | glyS ← / ← h16_A0522 | Glycyl‑tRNA synthetase beta subunit/conserved hypothetical protein |
RA | AM260479 | 547,879 | 2 bp→GA | coding (595‑596/630 nt) | h16_A0522 ← | conserved hypothetical protein |
RA | AM260479 | 561,006 | +G | intergenic (+9/+38) | h16_A0532 → / ← h16_A0533 | conserved hypothetical protein/universal stress protein, UspA family |
RA | AM260479 | 564,366 | C→G | P73A (CCC→GCC) | h16_A0537 → | Uncharacterized protein conserved in bacteria |
RA | AM260479 | 581,821 | +C | coding (117/1734 nt) | h16_A0555 → | zinc metalloprotease |
RA | AM260479 | 582,589 | T→G | H295Q (CAT→CAG) | h16_A0555 → | zinc metalloprotease |
RA | AM260479 | 582,759 | G→T | C352F (TGT→TTT) | h16_A0555 → | zinc metalloprotease |
RA | AM260479 | 619,859 | G→T | H108N (CAC→AAC) | acrA1 ← | Cation/multidrug efflux system, mebrane‑fusion component |
RA | AM260479 | 628,642 | Δ1 bp | coding (756/1206 nt) | h16_A0595 ← | Uncharacterized Fe‑S protein |
RA | AM260479 | 628,654 | +C | coding (744/1206 nt) | h16_A0595 ← | Uncharacterized Fe‑S protein |
RA | AM260479 | 637,111 | +G | intergenic (‑164/+218) | adk ← / ← kdsB | adenylate kinase/3‑Deoxy‑manno‑octulosonate cytidylyltransferase |
RA | AM260479 | 724,768 | +C | coding (82/669 nt) | lysE → | lysine efflux permease |
RA | AM260479 | 735,524 | +G | intergenic (‑409/+175) | h16_A0685 ← / ← h16_A0686 | hypothetical membrane spanning protein/Predictedpermease/CBS‑domain‑containing membrane protein |
RA | AM260479 | 782,330 | +G | intergenic (‑680/‑42) | h16_A0723 ← / → h16_A0724 | hypothetical membrane protein/hypothetical membrane protein |
RA | AM260479 | 782,333 | +A | intergenic (‑683/‑39) | h16_A0723 ← / → h16_A0724 | hypothetical membrane protein/hypothetical membrane protein |
RA | AM260479 | 787,769 | +T | intergenic (‑549/+743) | h16_A0728 ← / ← h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
RA | AM260479 | 787,882 | +T | intergenic (‑662/+630) | h16_A0728 ← / ← h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
RA | AM260479 | 916,512 | T→C | V341A (GTG→GCG) | h16_A0836 → | predicted exporter of the RND superfamily |
MC JC | AM260479 | 973,838 | Δ1,320 bp | [h16_A0881]–h16_A0882 | [h16_A0881], h16_A0882 | |
RA | AM260479 | 1,056,947 | +G | intergenic (+211/‑15) | h16_A0964 → / → h16_A0965 | conserved hypothetical protein/conserved hypothetical protein |
RA | AM260479 | 1,071,935 | +G | coding (626/627 nt) | h16_A0979 → | Hypothetical protein |
RA | AM260479 | 1,071,996 | +G | intergenic (+60/‑123) | h16_A0979 → / → h16_A0980 | Hypothetical protein/Hypothetical protein |
RA | AM260479 | 1,076,499 | C→T | P267L (CCG→CTG) | cpaF3 → | flp pilus assembly ATPase CpaF |
RA | AM260479 | 1,076,517 | C→T | P273L (CCG→CTG) | cpaF3 → | flp pilus assembly ATPase CpaF |
RA | AM260479 | 1,081,436 | +C | coding (437/447 nt) | h16_A0989 → | Hypothetical protein |
RA | AM260479 | 1,081,530 | T→C | L30L (TTG→CTG) | h16_A0990 → | outer membrane protein and related peptidoglycan‑associated (lipo)proteins |
RA | AM260479 | 1,089,440 | Δ1 bp | intergenic (+115/‑17) | h16_A0996 → / → h16_A0997 | FAD/FMN‑containing dehydrogenase/conserved hypothetical protein |
RA | AM260479 | 1,112,158 | Δ1 bp | coding (2295/2469 nt) | xdhB1 ← | xanthine dehydrogenase, subunit B |
RA | AM260479 | 1,167,791 | T→C | intergenic (+238/‑365) | h16_A1070 → / → cyoA1 | acyl dehydratase/bo3‑type quinol oxidase, subunit II |
RA | AM260479 | 1,191,426 | Δ1 bp | coding (350/390 nt) | h16_A1095 ← | Hypothetical protein |
RA | AM260479 | 1,191,771 | Δ1 bp | coding (5/390 nt) | h16_A1095 ← | Hypothetical protein |
RA | AM260479 | 1,231,117 | Δ1 bp | coding (2606/2652 nt) | glnE → | glutamine synthetase adenylyltransferase |
RA | AM260479 | 1,231,142 | Δ1 bp | coding (2631/2652 nt) | glnE → | glutamine synthetase adenylyltransferase |
RA | AM260479 | 1,231,143 | C→G | P878A (CCC→GCC) | glnE → | glutamine synthetase adenylyltransferase |
RA | AM260479 | 1,231,177 | Δ1 bp | intergenic (+14/‑201) | glnE → / → h16_A1128 | glutamine synthetase adenylyltransferase/Membrane protein |
RA | AM260479 | 1,231,226 | 2 bp→CA | intergenic (+63/‑151) | glnE → / → h16_A1128 | glutamine synthetase adenylyltransferase/Membrane protein |
RA | AM260479 | 1,240,057 | +T | intergenic (‑57/‑218) | h16_A1136 ← / → grpE | conserved hypothetical protein/molecular chaperone GrpE |
RA | AM260479 | 1,354,645 | +C | intergenic (+98/‑15) | h16_A1248 → / → h16_A1249 | predicted signal transduction protein containingCHASE, PAS, GGDEF and EAL domains/Hypothetical protein |
RA | AM260479 | 1,402,540 | C→G | G893A (GGC→GCC) | h16_A1292 ← | ATP‑dependent transcriptional regulator,MalT‑family |
RA | AM260479 | 1,464,365 | Δ1 bp | coding (49/552 nt) | h16_A1354 → | conserved hypothetical protein |
RA | AM260479 | 1,464,433 | A→G | Q39Q (CAA→CAG) | h16_A1354 → | conserved hypothetical protein |
RA | AM260479 | 1,464,435 | T→C | L40P (CTG→CCG) | h16_A1354 → | conserved hypothetical protein |
MC JC | AM260479 | 1,464,441 | Δ37 bp | coding (125‑161/552 nt) | h16_A1354 → | conserved hypothetical protein |
RA | AM260479 | 1,492,923 | T→C | L191L (TTG→CTG) | pdhB → | dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex |
RA | AM260479 | 1,492,953 | T→G | S201A (TCA→GCA) | pdhB → | dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex |
RA | AM260479 | 1,493,307 | T→G | F319V (TTC→GTC) | pdhB → | dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex |
RA | AM260479 | 1,744,688 | G→C | G211A (GGC→GCC) | h16_A1608 → | conserved hypothetical protein containing von Willebrand factor (vWF) type A |
RA | AM260479 | 1,841,200 | +G | intergenic (‑2736/‑2680) | h16_A1684 ← / → ycaC | conserved hypothetical protein/YcaC related amidohydrolase |
RA | AM260479 | 2,016,501 | T→C | V678V (GTT→GTC) | h16_A1857 → | Uncharacterized protein involved in exopolysaccharide biosynthesis |
RA | AM260479 | 2,111,013 | +G | coding (553/1089 nt) | h16_A1942 → | Hypothetical protein |
RA | AM260479 | 2,111,023 | +G | coding (563/1089 nt) | h16_A1942 → | Hypothetical protein |
RA | AM260479 | 2,253,193 | +C | coding (243/258 nt) | h16_A2071 → | Hypothetical protein |
RA | AM260479 | 2,274,430 | C→G | G565G (GGG→GGC) | h16_A2092 ← | Lysophospholipase, contains weak SAM‑dependent methyltransferase domain |
RA | AM260479 | 2,303,559 | A→C | S217R (AGT→AGG) | h16_A2116 ← | Putative DNA polymerase bacteriophage‑type,uracil‑DNA glycosylase superfamily |
RA | AM260479 | 2,517,378 | T→G | P77A (CCA→GCC) | zntA ← | putative heavy metal transporting P‑type ATPase |
RA | AM260479 | 2,517,380 | G→C | P77A (CCA→GCC) | zntA ← | putative heavy metal transporting P‑type ATPase |
RA | AM260479 | 2,517,386 | A→G | Y75H (TAT→CAT) | zntA ← | putative heavy metal transporting P‑type ATPase |
RA | AM260479 | 2,579,212 | G→C | A121A (GCC→GCG) | h16_A2374 ← | Metallopeptidase, M23B subfamily |
RA | AM260479 | 2,579,243 | A→G | I111T (ATT→ACT) | h16_A2374 ← | Metallopeptidase, M23B subfamily |
RA | AM260479 | 2,580,039 | A→G | R155R (CGT→CGC) | h16_A2375 ← | Protein‑L‑isoaspartate carboxylmethyltransferase |
RA | AM260479 | 2,594,082 | T→C | Q124Q (CAA→CAG) | cR ← | Recombinational DNA repair protein (RecF pathway) |
RA | AM260479 | 2,594,128 | Δ1 bp | coding (326/957 nt) | cR ← | Recombinational DNA repair protein (RecF pathway) |
RA | AM260479 | 2,616,505 | C→G | A45G (GCC→GGC) | h16_A2404 → | predicted esterase of the alpha‑beta hydrolase superfamily |
RA | AM260479 | 2,787,923 | +C | intergenic (+165/‑55) | cafA2 → / → moaA1 | Ribonuclease G and E/molybdopterin biosynthesis protein |
RA | AM260479 | 2,907,305 | 2 bp→AT | coding (181‑182/1221 nt) | h16_A2693 → | conserved hypothetical protein |
RA | AM260479 | 2,907,313 | Δ1 bp | coding (189/1221 nt) | h16_A2693 → | conserved hypothetical protein |
RA | AM260479 | 2,907,329 | Δ1 bp | coding (205/1221 nt) | h16_A2693 → | conserved hypothetical protein |
RA | AM260479 | 2,907,333 | Δ1 bp | coding (209/1221 nt) | h16_A2693 → | conserved hypothetical protein |
RA | AM260479 | 2,955,197 | Δ1 bp | coding (1034/1071 nt) | h16_A2735 → | phenylpropionate dioxygenase or related ring‑hydroxylating dioxygenase, large terminal subunit |
RA | AM260479 | 3,247,959 | 2 bp→CA | coding (723‑724/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
RA | AM260479 | 3,247,987 | Δ1 bp | coding (751/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
RA | AM260479 | 3,247,992 | Δ1 bp | coding (756/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
RA | AM260479 | 3,247,999 | Δ1 bp | coding (763/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
RA | AM260479 | 3,248,007 | Δ1 bp | coding (771/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
RA | AM260479 | 3,248,010 | C→G | A258A (GCC→GCG) | h16_A3001 → | transcriptional regulator, LysR‑family |
RA | AM260479 | 3,248,045 | Δ1 bp | coding (809/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
RA | AM260479 | 3,248,064 | +A | intergenic (+15/‑203) | h16_A3001 → / → hemK1 | transcriptional regulator, LysR‑family/methylase of polypeptide chain release factors |
RA | AM260479 | 3,248,092 | G→C | intergenic (+43/‑175) | h16_A3001 → / → hemK1 | transcriptional regulator, LysR‑family/methylase of polypeptide chain release factors |
RA | AM260479 | 3,285,635 | G→C | G181R (GGC→CGC) | nadB → | L‑Aspartate oxidase |
RA | AM260479 | 3,301,576 | +G | intergenic (+45/‑146) | lspA → / → dfp | lipoprotein signal peptidase II/phosphopantothenoylcysteine synthetase/decarboxylase |
RA | AM260479 | 3,302,920 | +C | coding (1199/1251 nt) | dfp → | phosphopantothenoylcysteine synthetase/decarboxylase |
RA | AM260479 | 3,333,763 | +G | coding (5/615 nt) | serB2 → | phosphoserine phosphatase |
MC JC | AM260479 | 3,399,144 | Δ1,321 bp | [leuS]–h16_A3140 | [leuS], h16_A3140 | |
RA | AM260479 | 3,461,712 | +G | coding (823/969 nt) | h16_A3204 ← | transcriptional regulator, LysR‑family |
RA | AM260479 | 3,515,018 | C→G | noncoding (32/75 nt) | tRNA‑Pro (CGG) → | tRNA‑Pro |
RA | AM260479 | 3,515,314 | Δ1 bp | intergenic (+253/‑570) | tRNA‑Pro (CGG) → / → pilB | tRNA‑Pro/Type IV pilus assembly protein PilB |
RA | AM260479 | 3,515,428 | +C | intergenic (+367/‑456) | tRNA‑Pro (CGG) → / → pilB | tRNA‑Pro/Type IV pilus assembly protein PilB |
RA | AM260479 | 3,529,526 | +G | intergenic (‑40/‑264) | secA ← / → h16_A3265 | preprotein translocase subunit SecA/Hypothetical protein |
RA | AM260479 | 3,529,607 | +C | intergenic (‑121/‑183) | secA ← / → h16_A3265 | preprotein translocase subunit SecA/Hypothetical protein |
RA | AM260479 | 3,602,642 | +A | intergenic (‑39/+87) | h16_A3328 ← / ← h16_A3329 | conserved hypothetical membrane protein/unassigned peptidase, M61 subfamily (glycyl aminopeptidase) |
RA | AM260479 | 3,602,688 | (G)6→5 | intergenic (‑85/+41) | h16_A3328 ← / ← h16_A3329 | conserved hypothetical membrane protein/unassigned peptidase, M61 subfamily (glycyl aminopeptidase) |
RA | AM260479 | 3,615,716 | +C | intergenic (+42/‑147) | prfA → / → h16_A3341 | protein chain release factor A (RF‑1)/Hypothetical protein |
RA | AM260479 | 3,615,722 | +A | intergenic (+48/‑141) | prfA → / → h16_A3341 | protein chain release factor A (RF‑1)/Hypothetical protein |
RA | AM260479 | 3,720,402 | G→T | D170Y (GAC→TAC) | h16_A3441 → | periplasmic multimodular transpeptidase/transglycosylase |
RA | AM260479 | 3,905,524 | G→C | A1285G (GCC→GGC) | putA ← | bifunctional proline dehydrogenase and proline oxidase |
RA | AM260479 | 3,972,184 | +C | intergenic (‑136/‑395) | h16_A3682 ← / → h16_A3683 | putative methyltransferase/Hypothetical protein |
RA | AM260479 | 3,983,831 | C→T | D23N (GAC→AAC) | ntrX ← | response regulator containing a Fis‑type DNA‑binding domain, NtrX |
RA | AM260479 | 3,998,635 | +C | intergenic (‑221/+527) | h16_A3705 ← / ← h16_A3706 | transcriptional regulator, LysR‑family/conserved hypothetical protein |
RA | AM260480 | 69,908 | +G | intergenic (+89/‑184) | h16_B0060 → / → h16_B0061 | conserved hypothetical membrane protein/ABC‑type transporter, periplasmic component |
RA | AM260480 | 153,689 | +G | intergenic (‑67/+93) | h16_B0133 ← / ← h16_B0134 | conserved hypothetical protein/outer membrane protein (porin) |
RA | AM260480 | 157,096 | +G | intergenic (‑26/+41) | h16_B0136 ← / ← h16_B0137 | cysteine desulfurase/conserved hypothetical membrane protein |
RA | AM260480 | 159,381 | +G | intergenic (‑13/‑342) | h16_B0138 ← / → h16_B0139 | transcriptional regulator, IclR‑family/conserved hypothetical transmembrane protein |
RA | AM260480 | 159,389 | +G | intergenic (‑21/‑334) | h16_B0138 ← / → h16_B0139 | transcriptional regulator, IclR‑family/conserved hypothetical transmembrane protein |
RA | AM260480 | 164,760 | C→T | A15V (GCC→GTC) | acoR → | transcriptional regulator of acetoin catabolism,PspF‑family |
RA | AM260480 | 274,470 | (G)10→9 | intergenic (+18/‑626) | h16_B0246 → / → fhaB | Hypothetical protein/filamentous hemagglutinin / adhesin |
RA | AM260480 | 293,407 | T→A | Y759N (TAC→AAC) | flhF → | Flagellar GTP‑binding protein |
RA | AM260480 | 433,189 | A→C | R133R (CGA→CGC) | h16_B0381 → | Acetyl‑CoA acetyltransferase |
RA | AM260480 | 507,425 | +A | coding (27/564 nt) | h16_B0448 → | fragment of ABC‑type transport system,periplasmic component: APC family |
RA | AM260480 | 635,877 | T→C | E259E (GAA→GAG) | fliM ← | flagellar motor switch protein |
RA | AM260480 | 753,133 | T→C | K37E (AAG→GAG) | h16_B0675 ← | Acyl‑CoA dehydrogenase,short‑chain specific |
RA | AM260480 | 919,006 | T→G | C159G (TGC→GGC) | h16_B0812 → | hydrolase or acyltransferase (alpha/beta hydrolase superfamily) |
RA | AM260480 | 951,073 | +G | intergenic (‑29/+230) | h16_B0838 ← / ← h16_B0839 | conserved hypothetical protein/transcriptional regulator, CRP‑family |
RA | AM260480 | 963,917 | Δ1 bp | intergenic (+84/‑3) | h16_B0849 → / → h16_B0850 | Acyl‑CoA dehydrogenase/Acyl‑CoA dehydrogenase, short‑chain specific |
RA | AM260480 | 978,518 | A→G | S117G (AGC→GGC) | h16_B0862 → | cytosine deaminase or related metal‑dependent hydrolase |
RA | AM260480 | 1,166,676 | +G | intergenic (+150/‑109) | h16_B1032 → / → h16_B1033 | conserved hypothetical protein/probable extra‑cytoplasmic solute receptor |
RA | AM260480 | 1,192,562 | +C | coding (163/594 nt) | cccA → | cytochrome c, mono‑or diheme variant |
RA | AM260480 | 1,326,746 | +G | intergenic (+47/‑123) | h16_B1172 → / → h16_B1173 | Amidase/MFS transporter |
RA | AM260480 | 1,326,751 | +G | intergenic (+52/‑118) | h16_B1172 → / → h16_B1173 | Amidase/MFS transporter |
RA | AM260480 | 1,326,761 | +G | intergenic (+62/‑108) | h16_B1172 → / → h16_B1173 | Amidase/MFS transporter |
RA | AM260480 | 2,018,102 | +C | intergenic (+111/+98) | h16_B1778 → / ← h16_B1779 | putative peptidase/putative peptidase, S33 family |
RA | AM260480 | 2,135,859 | +C | intergenic (‑237/‑97) | h16_B1889 ← / → h16_B1890 | transcriptional regulator, IclR‑family/APC transporter, AAT family |
RA | AM260480 | 2,295,879 | T→A | Q603L (CAG→CTG) | h16_B2042 ← | Hypothetical protein |
RA | AM260480 | 2,308,233 | (C)5→4 | intergenic (+176/‑161) | h16_B2050 → / → h16_B2051 | response regulator containing a GGDEF effector domain/conserved hypothetical protein |
RA | AM260480 | 2,431,093 | Δ1 bp | coding (2380/2469 nt) | h16_B2148 → | membrane carboxypeptidase |
RA | AM260480 | 2,737,499 | A→G | intergenic (‑216/+28) | h16_B2423 ← / ← h16_B2424 | periplasmic solute binding protein/Hypothetical protein |
RA | AM260480 | 2,737,505 | Δ1 bp | intergenic (‑222/+22) | h16_B2423 ← / ← h16_B2424 | periplasmic solute binding protein/Hypothetical protein |
RA | AM260480 | 2,737,510 | T→G | intergenic (‑227/+17) | h16_B2423 ← / ← h16_B2424 | periplasmic solute binding protein/Hypothetical protein |
RA | AM260480 | 2,843,580 | +G | intergenic (‑1/+68) | pip ← / ← h16_B2516 | prolyl aminopeptidase/transcriptional regulator, LysR‑family |
RA | AY305378 | 682 | C→A | P190T (CCG→ACG) | hoxK → | membrane‑bound [NiFe] hydrogenase small subunit |
JC JC | AY305378 | 84,810 | ISAE1 (+) +8 bp | [hoxW] | [hoxW] |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | AM260479 | 55305 | 55332 | 28 | 2 [0] | [1] 2 | h16_A0040 | predicted membrane protein |
* | * | ÷ | AM260479 | 89772 | 89827 | 56 | 2 [1] | [0] 2 | h16_A0074 | transcriptional regulator, AraC‑family |
* | * | ÷ | AM260479 | 156375 | 156435 | 61 | 2 [0] | [0] 5 | [h16_A0142] | [h16_A0142] |
* | * | ÷ | AM260479 | 159919 | 159934 | 16 | 2 [1] | [1] 3 | h16_A0146 | conserved hypothetical protein |
* | * | ÷ | AM260479 | 254004 | 254024 | 21 | 9 [0] | [0] 2 | h16_A0240 | Acetyltransferase (GNAT) family |
* | * | ÷ | AM260479 | 254330 | 254366 | 37 | 5 [1] | [0] 2 | h16_A0241 | Uncharacterized protein, possibly involved in aromatic compounds catabolism |
* | * | ÷ | AM260479 | 313450 | 313453 | 4 | 4 [0] | [1] 3 | h16_A0296/gltR1 | putative membrane associated dehydrogenase (flavoprotein)/response regulator of C4‑dicarboxylate transportsystem |
* | * | ÷ | AM260479 | 342052 | 342053 | 2 | 2 [1] | [0] 2 | amtB | ammonium transporter |
* | * | ÷ | AM260479 | 370844 | 370852 | 9 | 2 [0] | [0] 4 | sco2 | cytochrome oxidase assembly protein, Sco1/SenC family |
* | * | ÷ | AM260479 | 378886 | 378896 | 11 | 2 [0] | [0] 4 | h16_A0360/h16_A0361 | response regulator with putative antiterminator output/putative fumarylacetoacetat hydroxylase |
* | * | ÷ | AM260479 | 381507 | 381643 | 137 | 2 [0] | [0] 2 | ftsY | signal recognition particle receptor FtsY |
* | * | ÷ | AM260479 | 388431 | 388446 | 16 | 2 [0] | [0] 2 | rfbB1 | dTDP‑D‑glucose 4,6‑dehydratase |
* | * | ÷ | AM260479 | 487027 | 487084 | 58 | 5 [1] | [0] 2 | h16_A0461 | two domain protein: 3‑hydroxyacyl‑CoA dehydrogenase |
* | * | ÷ | AM260479 | 522631 | 522675 | 45 | 2 [1] | [0] 2 | ruvB | holliday junction resolvasome, helicase subunit RuvB |
* | * | ÷ | AM260479 | 570426 | 570537 | 112 | 3 [1] | [0] 2 | h16_A0542/h16_A0543 | signal transduction histidine kinase/response regulator, OmpR‑family |
* | * | ÷ | AM260479 | 663334 | 663376 | 43 | 3 [0] | [0] 3 | h16_A0625 | outer membrane protein (porin) |
* | * | ÷ | AM260479 | 718102 | 718176 | 75 | 2 [1] | [0] 2 | h16_A0667 | Sodium:sulfate symporter transmembrane region |
* | * | ÷ | AM260479 | 791450 | 791484 | 35 | 2 [0] | [1] 2 | h16_A0732 | Beta‑propeller domains of methanol dehydrogenase‑type (homolog) |
* | * | ÷ | AM260479 | 857668 | 857679 | 12 | 2 [0] | [1] 2 | h16_A0786 | predicted phosphatase |
* | * | ÷ | AM260479 | 1017304 | 1017315 | 12 | 2 [0] | [0] 2 | h16_A0921 | Aerobic‑type carbon monoxide dehydrogenase homolog, small subunit |
* | * | ÷ | AM260479 | 1092572 | 1092577 | 6 | 3 [1] | [0] 2 | pepN | alanyl aminopeptidase N |
* | * | ÷ | AM260479 | 1129310 | 1129392 | 83 | 2 [0] | [1] 4 | [h16_A1031] | [h16_A1031] |
* | * | ÷ | AM260479 | 1191206 | 1191211 | 6 | 2 [0] | [1] 2 | h16_A1094 | Hypothetical protein |
* | * | ÷ | AM260479 | 1206095 | 1206172 | 78 | 2 [1] | [1] 3 | h16_A1108 | conserved hypothetical protein |
* | * | ÷ | AM260479 | 1243308 | 1243328 | 21 | 5 [0] | [0] 2 | h16_A1141 | predicted permease, DMT superfamily |
* | * | ÷ | AM260479 | 1319170 | 1319193 | 24 | 2 [0] | [0] 4 | h16_A1213/suhB | conserved hypothetical protein/inositol monophosphatase |
* | * | ÷ | AM260479 | 1380850 | 1380921 | 72 | 2 [1] | [0] 2 | h16_A1272 | conserved hypothetical protein |
* | * | ÷ | AM260479 | 1381113 | 1381238 | 126 | 3 [1] | [1] 3 | h16_A1272 | conserved hypothetical protein |
* | * | ÷ | AM260479 | 1535839 | 1535852 | 14 | 2 [0] | [1] 3 | h16_A1417 | ABC‑type transporter, ATPase component: HAAT family |
* | * | ÷ | AM260479 | 1578923 | 1578947 | 25 | 2 [0] | [0] 2 | mfd/h16_A1456 | Transcription‑repair coupling factor/4‑Diphosphocytidyl‑2‑methyl‑D‑erithritol synthase |
* | * | ÷ | AM260479 | 1647005 | 1647023 | 19 | 3 [1] | [0] 2 | [h16_A1515] | [h16_A1515] |
* | * | ÷ | AM260479 | 1670865 | 1670885 | 21 | 4 [1] | [1] 5 | h16_A1536 | conserved hypothetical protein |
* | * | ÷ | AM260479 | 1723480 | 1723481 | 2 | 2 [0] | [0] 2 | h16_A1589 | transcriptional regulator, MocR family |
* | * | ÷ | AM260479 | 1847989 | 1848027 | 39 | 2 [1] | [1] 3 | h16_A1692/h16_A1693 | conserved hypothetical protein/transcriptional regulator, LacI‑family |
* | * | ÷ | AM260479 | 1953144 | 1953159 | 16 | 2 [0] | [0] 3 | h16_A1789/h16_A1791 | glycerol trinitrate reductase/predicted redox protein, regulator of disulfide bond formation |
* | * | ÷ | AM260479 | 1993262 | 1993368 | 107 | 2 [1] | [1] 2 | h16_A1831 | Hypothetical protein |
* | * | ÷ | AM260479 | 2081625 | 2081671 | 47 | 5 [1] | [0] 2 | [h16_A1915] | [h16_A1915] |
* | * | ÷ | AM260479 | 2154170 | 2154199 | 30 | 2 [0] | [1] 3 | h16_A1978/h16_A1979 | conserved hypothetical protein/conserved hypothetical protein |
* | * | ÷ | AM260479 | 2208785 | 2208850 | 66 | 2 [0] | [1] 2 | h16_A2032 | hypothetical membrane associated protein |
* | * | ÷ | AM260479 | 2253282 | 2253324 | 43 | 2 [0] | [1] 4 | h16_A2072 | predicted permease |
* | * | ÷ | AM260479 | 2426120 | 2426148 | 29 | 2 [0] | [1] 4 | [lytT] | [lytT] |
* | * | ÷ | AM260479 | 2463504 | 2463544 | 41 | 2 [1] | [0] 2 | h16_A2268/h16_A2269 | uncharacterized conserved protein/bacterioferritin comigratory protein |
* | * | ÷ | AM260479 | 2595364 | 2595374 | 11 | 2 [0] | [0] 2 | dnaX | DNA polymerase III tau/gamma subunit |
* | * | ÷ | AM260479 | 2878434 | 2878434 | 1 | 2 [0] | [0] 2 | parC | Topoisomerase IV subunit A |
* | * | ÷ | AM260479 | 2909083 | 2909136 | 54 | 2 [0] | [1] 4 | h16_A2694 | Serine/threonine protein kinase |
* | * | ÷ | AM260479 | 3032745 | 3032774 | 30 | 3 [1] | [0] 2 | h16_A2804 | conserved hypothetical protein |
* | * | ÷ | AM260479 | 3058207 | 3058285 | 79 | 2 [0] | [1] 2 | h16_A2830 | hypothetical membrane associated protein |
* | * | ÷ | AM260479 | 3341367 | 3341431 | 65 | 2 [1] | [1] 2 | [h16_A3087] | [h16_A3087] |
* | * | ÷ | AM260479 | 3365809 | 3365842 | 34 | 2 [0] | [1] 3 | cG | ATP‑dependent DNA helicase |
* | * | ÷ | AM260479 | 3366730 | 3366798 | 69 | 2 [0] | [1] 3 | cG | ATP‑dependent DNA helicase |
* | * | ÷ | AM260479 | 3462495 | 3462535 | 41 | 3 [1] | [0] 3 | [h16_A3204] | [h16_A3204] |
* | * | ÷ | AM260479 | 3482481 | 3482520 | 40 | 2 [0] | [1] 4 | h16_A3225/h16_A3226 | ABC‑type transporter, ATPase and permease components/Hypothetical protein |
* | * | ÷ | AM260479 | 3554467 | 3554510 | 44 | 2 [1] | [0] 2 | h16_A3287 | Hypothetical protein |
* | * | ÷ | AM260479 | 3597213 | 3597232 | 20 | 2 [0] | [0] 5 | h16_A3326 | ABC‑type transporter, duplicated permease domains: TauT family |
* | * | ÷ | AM260479 | 3609128 | 3609201 | 74 | 2 [0] | [1] 4 | h16_A3334 | conserved hypothetical protein |
* | * | ÷ | AM260479 | 3671706 | 3671736 | 31 | 2 [0] | [0] 2 | h16_A3390/h16_A3391 | signal transduction histidine kinase/Hypothetical protein related to helicases |
* | * | ÷ | AM260479 | 3722912 | 3722995 | 84 | 2 [0] | [1] 2 | h16_A3442/lysA2 | protein implicated in iron transport, frataxin homolog/diaminopimelate decarboxylase |
* | * | ÷ | AM260479 | 3857090 | 3857091 | 2 | 2 [0] | [0] 2 | h16_A3590 | C4‑dicarboxylate transport protein |
* | * | ÷ | AM260479 | 3871534 | 3871602 | 69 | 3 [1] | [1] 2 | [h16_A3603] | [h16_A3603] |
* | * | ÷ | AM260479 | 3911231 | 3911270 | 40 | 2 [0] | [1] 2 | priA | Primosomal protein N' |
* | * | ÷ | AM260480 | 81705 | 81742 | 38 | 4 [0] | [2] 4 | [h16_B0073] | [h16_B0073] |
* | * | ÷ | AM260480 | 174665–175127 | 180009–175130 | 4–5345 | 4 [2] | [2] 3 | rrsD–[rrfD] | rrsD,tRNA‑Ile (GAT),tRNA‑Ala (TGC),rrlD,[rrfD] |
* | * | ÷ | AM260480 | 193533 | 193619 | 87 | 4 [2] | [2] 4 | h16_B0168 | putative multidrug resistance protein |
* | * | ÷ | AM260480 | 287723 | 287758 | 36 | 4 [2] | [2] 3 | h16_B0251/flhB1 | Lipoprotein/flagellar biosynthesis protein |
* | * | ÷ | AM260480 | 334546 | 334584 | 39 | 4 [2] | [2] 4 | h16_B0298/h16_B0299 | transcriptional regulator, LysR‑family/putative glucose/sorbosone dehydrogenase |
* | * | ÷ | AM260480 | 571270 | 571288 | 19 | 3 [2] | [0] 4 | h16_B0507 | Hypothetical protein |
* | * | ÷ | AM260480 | 633603 | 633665 | 63 | 8 [0] | [2] 4 | [fliQ] | [fliQ] |
* | * | ÷ | AM260480 | 752012 | 752055 | 44 | 4 [2] | [2] 3 | h16_B0674/h16_B0675 | conserved hypothetical protein/Acyl‑CoA dehydrogenase,short‑chain specific |
* | * | ÷ | AM260480 | 860301 | 860332 | 32 | 4 [2] | [2] 4 | h16_B0761/h16_B0762 | transcriptional regulator, TetR/AcrR‑family/conserved hypothetical membrane protein |
* | * | ÷ | AM260480 | 867733–869615 | 872730–869620 | 6–4998 | 5 [2] | [1] 3 | [rrsE]–[rrfE] | [rrsE],tRNA‑Ile (GAT),tRNA‑Ala (TGC),rrlE,[rrfE] |
* | * | ÷ | AM260480 | 1086832 | 1086884 | 53 | 4 [2] | [1] 5 | h16_B0964 | conserved hypothetical protein |
* | * | ÷ | AM260480 | 1208433 | 1208533 | 101 | 3 [2] | [0] 3 | h16_B1068 | conserved hypothetical protein |
* | * | ÷ | AM260480 | 1222264 | 1222294 | 31 | 4 [2] | [2] 4 | h16_B1080/tyrB2 | Hypothetical protein/tyrosine aminotransferase |
* | * | ÷ | AM260480 | 1319229 | 1319268 | 40 | 4 [0] | [2] 4 | h16_B1167/h16_B1168 | Hypothetical protein/conserved hypothetical protein |
* | * | ÷ | AM260480 | 1416956 | 1417009 | 54 | 3 [2] | [2] 4 | [h16_B1257] | [h16_B1257] |
* | * | ÷ | AM260480 | 1434810 | 1434852 | 43 | 3 [1] | [1] 3 | h16_B1277 | hypothetical membrane associated protein |
* | * | ÷ | AM260480 | 1465454 | 1465529 | 76 | 3 [2] | [1] 3 | h16_B1311 | Hypothetical protein |
* | * | ÷ | AM260480 | 1482245 | 1482289 | 45 | 8 [1] | [2] 4 | h16_B1335 | Acyl‑CoA synthetase (AMP‑forming)/AMP‑acid ligase II |
* | * | ÷ | AM260480 | 1808129 | 1808160 | 32 | 3 [1] | [2] 4 | h16_B1604 | predicted phosphohydrolase |
* | * | ÷ | AM260480 | 1861307 | 1861323 | 17 | 4 [2] | [0] 5 | h16_B1648 | Hypothetical protein |
* | * | ÷ | AM260480 | 2139643 | 2139695 | 53 | 5 [2] | [2] 6 | dadA7 | D‑amino‑acid dehydrogenase |
* | * | ÷ | AM260480 | 2459876 | 2459908 | 33 | 4 [2] | [2] 3 | h16_B2171 | Glycosyltransferase, probably involved in cell wall biogenesis |
* | * | ÷ | AM260480 | 2532176 | 2532207 | 32 | 3 [2] | [2] 5 | bkdA1 | 2‑Oxoisovalerate dehydrogenase E1 component,alpha subunit |
* | * | ÷ | AM260480 | 2866432 | 2866468 | 37 | 3 [0] | [2] 4 | h16_B2539 | conserved hypothetical protein |
* | * | ÷ | AY305378 | 69642 | 69651 | 10 | 4 [0] | [0] 2 | hypC2/gmhA | HypC2/putative sedoheptulose 7‑phosphate isomerase |
* | * | ÷ | AY305378 | 85312 | 85334 | 23 | 2 [0] | [0] 2 | hoxI | HoxI |
* | * | ÷ | AY305378 | 99506 | 99539 | 34 | 3 [1] | [0] 2 | kfrA1 | putative KfrA protein |
* | * | ÷ | AY305378 | 99937 | 100063 | 127 | 2 [0] | [0] 2 | kfrA1 | putative KfrA protein |
* | * | ÷ | AY305378 | 100146 | 100288–100286 | 141–143 | 2 [0] | [1] 3 | [kfrA1]–[PHG106] | [kfrA1],[PHG106] |
* | * | ÷ | AY305378 | 151823 | 151868 | 46 | 3 [1] | [1] 2 | PHG152/PHG153 | conserved hypothetical protein/conserved hypothetical protein |
* | * | ÷ | AY305378 | 156580 | 156701 | 122 | 3 [1] | [1] 2 | kfrA2 | putative KfrA‑like protein |
* | * | ÷ | AY305378 | 261514 | 261521 | 8 | 2 [0] | [1] 2 | norR | sigma 54 dependent transcriptional activator |
* | * | ÷ | AY305378 | 346769 | 346815 | 47 | 3 [1] | [0] 2 | PHG331 | conserved hypothetical protein |
* | * | ÷ | AY305378 | 451836 | 451847 | 12 | 2 [0] | [0] 2 | cbbLp/– | ribulose‑1,5‑bisphosphate carboxylase/oxygenase large subunit/– |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AM260479 | = 197458 | 16 (0.570) | 4 (0.150) | 4/196 | 2.0 | 20.1% | coding (171/2028 nt) | accC1 | biotin carboxylase |
? | AM260479 | = 197469 | 17 (0.650) | coding (182/2028 nt) | accC1 | biotin carboxylase | |||||
* | ? | AM260479 | = 1631558 | 29 (1.030) | 5 (0.200) | 5/192 | 1.7 | 23.1% | coding (465/963 nt) | h16_A1503 | permease of the drug/metabolite transporter (DMT) superfamily |
? | AM260479 | = 1631620 | 7 (0.280) | coding (403/963 nt) | h16_A1503 | permease of the drug/metabolite transporter (DMT) superfamily | |||||
* | ? | AM260479 | = 1765716 | 12 (0.430) | 6 (0.230) | 6/196 | 1.5 | 33.2% | coding (309/2826 nt) | h16_A1623 | molecular chaperone |
? | AM260479 | = 1765746 | 13 (0.500) | coding (279/2826 nt) | h16_A1623 | molecular chaperone | |||||
* | ? | AM260479 | 2746850 = | 16 (0.570) | 5 (0.190) | 5/196 | 1.7 | 23.9% | coding (354/414 nt) | exbD1 | biopolymer transport protein |
? | AM260479 | 2746873 = | 17 (0.650) | coding (377/414 nt) | exbD1 | biopolymer transport protein | |||||
* | ? | AM260479 | 3208755 = | 27 (0.960) | 8 (0.310) | 6/194 | 1.5 | 22.0% | coding (581/969 nt) | cbiB | cobalamin biosynthesis protein (CbiB) |
? | AM260479 | 3208790 = | 32 (1.240) | coding (616/969 nt) | cbiB | cobalamin biosynthesis protein (CbiB) | |||||
* | ? | AM260479 | 3700270 = | 9 (0.320) | 5 (0.200) | 5/192 | 1.7 | 26.9% | coding (492/780 nt) | ttg2B | ABC‑type transporter, permease component involved in toluene tolerance |
? | AM260479 | 3700457 = | 19 (0.750) | coding (305/780 nt) | ttg2B | ABC‑type transporter, permease component involved in toluene tolerance | |||||
* | ? | AM260479 | 3846016 = | 13 (0.460) | 3 (0.120) | 3/192 | 2.2 | 20.8% | coding (83/1266 nt) | hcaD | Uncharacterized NAD(FAD)‑dependent dehydrogenase |
? | AM260479 | 3846078 = | 11 (0.430) | coding (21/1266 nt) | hcaD | Uncharacterized NAD(FAD)‑dependent dehydrogenase | |||||
* | ? | AM260479 | 4036814 = | 16 (0.570) | 4 (0.160) | 4/194 | 2.0 | 21.8% | coding (55/1281 nt) | h16_A3733 | conserved hypothetical protein |
? | AM260479 | 4036962 = | 14 (0.540) | coding (1297/1353 nt) | h16_A3734 | conserved hypothetical protein | |||||
* | ? | AM260480 | = 360746 | 23 (0.700) | 4 (0.130) | 4/196 | 2.3 | 20.9% | coding (1290/1605 nt) | h16_B0322 | aldehyde dehydrogenase, NAD‑dependent |
? | AM260480 | = 360969 | 9 (0.300) | coding (1067/1605 nt) | h16_B0322 | aldehyde dehydrogenase, NAD‑dependent | |||||
* | ? | AM260480 | = 1107017 | 17 (0.520) | 4 (0.130) | 4/194 | 2.3 | 21.9% | coding (168/1452 nt) | gabD1 | Succinate‑semialdehyde dehydrogenase (NADP+) |
? | AM260480 | = 1107039 | 13 (0.440) | coding (190/1452 nt) | gabD1 | Succinate‑semialdehyde dehydrogenase (NADP+) | |||||
* | ? | AM260480 | 2564349 = | 18 (0.550) | 4 (0.150) | 4/206 | 1.6 | 21.3% | coding (1361/3738 nt) | narG2 | respiratory nitrate reductase alpha chain (NarG) |
? | AY305378 | 288727 = | 12 (0.570) | coding (1384/3762 nt) | narG | respiratory nitrate reductase catalytic subunit | |||||
* | ? | AM260480 | = 2663509 | 29 (0.890) | 5 (0.170) | 5/192 | 2.0 | 21.6% | coding (651/2733 nt) | h16_B2352 | ATP‑dependent DNA ligase |
? | AM260480 | = 2663631 | 10 (0.340) | coding (773/2733 nt) | h16_B2352 | ATP‑dependent DNA ligase | |||||
* | ? | AM260480 | = 2899943 | 19 (0.580) | 5 (0.170) | 5/194 | 2.0 | 22.5% | coding (553/1281 nt) | h16_B2569 | Putative MFS transporter |
? | AM260480 | = 2899965 | 17 (0.570) | coding (531/1281 nt) | h16_B2569 | Putative MFS transporter |