breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence seq id position mutation annotation gene description
RA AM260479 160,041 G→C G102A (GGG→GCG)  h16_A0146 → conserved hypothetical protein
RA AM260479 160,043 G→C V103L (GTA→CTA)  h16_A0146 → conserved hypothetical protein
RA AM260479 160,050 +C coding (314/939 nt) h16_A0146 → conserved hypothetical protein
RA AM260479 208,932 A→C H322Q (CAT→CAG h16_A0195 ← Putative GTPase (G3E family)
RA AM260479 208,953 A→C V315V (GTT→GTG h16_A0195 ← Putative GTPase (G3E family)
RA AM260479 245,288 T→G L247V (TTG→GTG)  betA2 → choline dehydrogenase
RA AM260479 275,969 +C coding (268/558 nt) h16_A0264 ← Hypothetical protein
RA AM260479 342,407 T→C L180L (TTG→CTG)  amtB → ammonium transporter
RA AM260479 406,488 G→T L70I (CTC→ATC)  h16_A0388 ← ABC‑type transporter, ATPase component: HAAT family
RA AM260479 500,512 G→A W23* (TGG→TAG)  h16_A0473 → ABC‑type transporter, permease component: PAAT family
RA AM260479 518,612 G→C intergenic (+17/‑48) h16_A0492 → / → pgam2 Phospholipid‑binding protein/phosphoglycerate mutase 2 protein
RA AM260479 547,818 +C intergenic (‑10/+27) glyS ← / ← h16_A0522 Glycyl‑tRNA synthetase beta subunit/conserved hypothetical protein
RA AM260479 547,839 Δ1 bp intergenic (‑31/+6) glyS ← / ← h16_A0522 Glycyl‑tRNA synthetase beta subunit/conserved hypothetical protein
RA AM260479 547,879 2 bp→GA coding (595‑596/630 nt) h16_A0522 ← conserved hypothetical protein
RA AM260479 561,006 +G intergenic (+9/+38) h16_A0532 → / ← h16_A0533 conserved hypothetical protein/universal stress protein, UspA family
RA AM260479 564,366 C→G P73A (CCC→GCC)  h16_A0537 → Uncharacterized protein conserved in bacteria
RA AM260479 581,821 +C coding (117/1734 nt) h16_A0555 → zinc metalloprotease
RA AM260479 582,589 T→G H295Q (CAT→CAG h16_A0555 → zinc metalloprotease
RA AM260479 582,759 G→T C352F (TGT→TTT)  h16_A0555 → zinc metalloprotease
RA AM260479 619,859 G→T H108N (CAC→AAC)  acrA1 ← Cation/multidrug efflux system, mebrane‑fusion component
RA AM260479 628,642 Δ1 bp coding (756/1206 nt) h16_A0595 ← Uncharacterized Fe‑S protein
RA AM260479 628,654 +C coding (744/1206 nt) h16_A0595 ← Uncharacterized Fe‑S protein
RA AM260479 637,111 +G intergenic (‑164/+218) adk ← / ← kdsB adenylate kinase/3‑Deoxy‑manno‑octulosonate cytidylyltransferase
RA AM260479 724,768 +C coding (82/669 nt) lysE → lysine efflux permease
RA AM260479 735,524 +G intergenic (‑409/+175) h16_A0685 ← / ← h16_A0686 hypothetical membrane spanning protein/Predictedpermease/CBS‑domain‑containing membrane protein
RA AM260479 782,330 +G intergenic (‑680/‑42) h16_A0723 ← / → h16_A0724 hypothetical membrane protein/hypothetical membrane protein
RA AM260479 782,333 +A intergenic (‑683/‑39) h16_A0723 ← / → h16_A0724 hypothetical membrane protein/hypothetical membrane protein
RA AM260479 787,769 +T intergenic (‑549/+743) h16_A0728 ← / ← h16_A0729 response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family
RA AM260479 787,882 +T intergenic (‑662/+630) h16_A0728 ← / ← h16_A0729 response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family
RA AM260479 916,512 T→C V341A (GTG→GCG)  h16_A0836 → predicted exporter of the RND superfamily
MC JC AM260479 973,838 Δ1,320 bp [h16_A0881]h16_A0882 [h16_A0881], h16_A0882
RA AM260479 1,056,947 +G intergenic (+211/‑15) h16_A0964 → / → h16_A0965 conserved hypothetical protein/conserved hypothetical protein
RA AM260479 1,071,935 +G coding (626/627 nt) h16_A0979 → Hypothetical protein
RA AM260479 1,071,996 +G intergenic (+60/‑123) h16_A0979 → / → h16_A0980 Hypothetical protein/Hypothetical protein
RA AM260479 1,076,499 C→T P267L (CCG→CTG)  cpaF3 → flp pilus assembly ATPase CpaF
RA AM260479 1,076,517 C→T P273L (CCG→CTG)  cpaF3 → flp pilus assembly ATPase CpaF
RA AM260479 1,081,436 +C coding (437/447 nt) h16_A0989 → Hypothetical protein
RA AM260479 1,081,530 T→C L30L (TTG→CTG)  h16_A0990 → outer membrane protein and related peptidoglycan‑associated (lipo)proteins
RA AM260479 1,089,440 Δ1 bp intergenic (+115/‑17) h16_A0996 → / → h16_A0997 FAD/FMN‑containing dehydrogenase/conserved hypothetical protein
RA AM260479 1,112,158 Δ1 bp coding (2295/2469 nt) xdhB1 ← xanthine dehydrogenase, subunit B
RA AM260479 1,167,791 T→C intergenic (+238/‑365) h16_A1070 → / → cyoA1 acyl dehydratase/bo3‑type quinol oxidase, subunit II
RA AM260479 1,191,426 Δ1 bp coding (350/390 nt) h16_A1095 ← Hypothetical protein
RA AM260479 1,191,771 Δ1 bp coding (5/390 nt) h16_A1095 ← Hypothetical protein
RA AM260479 1,231,117 Δ1 bp coding (2606/2652 nt) glnE → glutamine synthetase adenylyltransferase
RA AM260479 1,231,142 Δ1 bp coding (2631/2652 nt) glnE → glutamine synthetase adenylyltransferase
RA AM260479 1,231,143 C→G P878A (CCC→GCC)  glnE → glutamine synthetase adenylyltransferase
RA AM260479 1,231,177 Δ1 bp intergenic (+14/‑201) glnE → / → h16_A1128 glutamine synthetase adenylyltransferase/Membrane protein
RA AM260479 1,231,226 2 bp→CA intergenic (+63/‑151) glnE → / → h16_A1128 glutamine synthetase adenylyltransferase/Membrane protein
RA AM260479 1,240,057 +T intergenic (‑57/‑218) h16_A1136 ← / → grpE conserved hypothetical protein/molecular chaperone GrpE
RA AM260479 1,354,645 +C intergenic (+98/‑15) h16_A1248 → / → h16_A1249 predicted signal transduction protein containingCHASE, PAS, GGDEF and EAL domains/Hypothetical protein
RA AM260479 1,402,540 C→G G893A (GGC→GCC)  h16_A1292 ← ATP‑dependent transcriptional regulator,MalT‑family
RA AM260479 1,464,365 Δ1 bp coding (49/552 nt) h16_A1354 → conserved hypothetical protein
RA AM260479 1,464,433 A→G Q39Q (CAA→CAG h16_A1354 → conserved hypothetical protein
RA AM260479 1,464,435 T→C L40P (CTG→CCG)  h16_A1354 → conserved hypothetical protein
MC JC AM260479 1,464,441 Δ37 bp coding (125‑161/552 nt) h16_A1354 → conserved hypothetical protein
RA AM260479 1,492,923 T→C L191L (TTG→CTG)  pdhB → dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex
RA AM260479 1,492,953 T→G S201A (TCA→GCA)  pdhB → dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex
RA AM260479 1,493,307 T→G F319V (TTC→GTC)  pdhB → dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex
RA AM260479 1,744,688 G→C G211A (GGC→GCC)  h16_A1608 → conserved hypothetical protein containing von Willebrand factor (vWF) type A
RA AM260479 1,841,200 +G intergenic (‑2736/‑2680) h16_A1684 ← / → ycaC conserved hypothetical protein/YcaC related amidohydrolase
RA AM260479 2,016,501 T→C V678V (GTT→GTC h16_A1857 → Uncharacterized protein involved in exopolysaccharide biosynthesis
RA AM260479 2,111,013 +G coding (553/1089 nt) h16_A1942 → Hypothetical protein
RA AM260479 2,111,023 +G coding (563/1089 nt) h16_A1942 → Hypothetical protein
RA AM260479 2,253,193 +C coding (243/258 nt) h16_A2071 → Hypothetical protein
RA AM260479 2,274,430 C→G G565G (GGG→GGC h16_A2092 ← Lysophospholipase, contains weak SAM‑dependent methyltransferase domain
RA AM260479 2,303,559 A→C S217R (AGT→AGG h16_A2116 ← Putative DNA polymerase bacteriophage‑type,uracil‑DNA glycosylase superfamily
RA AM260479 2,517,378 T→G P77A (CCA→GCC zntA ← putative heavy metal transporting P‑type ATPase
RA AM260479 2,517,380 G→C P77A (CCA→GCC)  zntA ← putative heavy metal transporting P‑type ATPase
RA AM260479 2,517,386 A→G Y75H (TAT→CAT)  zntA ← putative heavy metal transporting P‑type ATPase
RA AM260479 2,579,212 G→C A121A (GCC→GCG h16_A2374 ← Metallopeptidase, M23B subfamily
RA AM260479 2,579,243 A→G I111T (ATT→ACT)  h16_A2374 ← Metallopeptidase, M23B subfamily
RA AM260479 2,580,039 A→G R155R (CGT→CGC h16_A2375 ← Protein‑L‑isoaspartate carboxylmethyltransferase
RA AM260479 2,594,082 T→C Q124Q (CAA→CAG cR ← Recombinational DNA repair protein (RecF pathway)
RA AM260479 2,594,128 Δ1 bp coding (326/957 nt) cR ← Recombinational DNA repair protein (RecF pathway)
RA AM260479 2,616,505 C→G A45G (GCC→GGC)  h16_A2404 → predicted esterase of the alpha‑beta hydrolase superfamily
RA AM260479 2,787,923 +C intergenic (+165/‑55) cafA2 → / → moaA1 Ribonuclease G and E/molybdopterin biosynthesis protein
RA AM260479 2,907,305 2 bp→AT coding (181‑182/1221 nt) h16_A2693 → conserved hypothetical protein
RA AM260479 2,907,313 Δ1 bp coding (189/1221 nt) h16_A2693 → conserved hypothetical protein
RA AM260479 2,907,329 Δ1 bp coding (205/1221 nt) h16_A2693 → conserved hypothetical protein
RA AM260479 2,907,333 Δ1 bp coding (209/1221 nt) h16_A2693 → conserved hypothetical protein
RA AM260479 2,955,197 Δ1 bp coding (1034/1071 nt) h16_A2735 → phenylpropionate dioxygenase or related ring‑hydroxylating dioxygenase, large terminal subunit
RA AM260479 3,247,959 2 bp→CA coding (723‑724/813 nt) h16_A3001 → transcriptional regulator, LysR‑family
RA AM260479 3,247,987 Δ1 bp coding (751/813 nt) h16_A3001 → transcriptional regulator, LysR‑family
RA AM260479 3,247,992 Δ1 bp coding (756/813 nt) h16_A3001 → transcriptional regulator, LysR‑family
RA AM260479 3,247,999 Δ1 bp coding (763/813 nt) h16_A3001 → transcriptional regulator, LysR‑family
RA AM260479 3,248,007 Δ1 bp coding (771/813 nt) h16_A3001 → transcriptional regulator, LysR‑family
RA AM260479 3,248,010 C→G A258A (GCC→GCG h16_A3001 → transcriptional regulator, LysR‑family
RA AM260479 3,248,045 Δ1 bp coding (809/813 nt) h16_A3001 → transcriptional regulator, LysR‑family
RA AM260479 3,248,064 +A intergenic (+15/‑203) h16_A3001 → / → hemK1 transcriptional regulator, LysR‑family/methylase of polypeptide chain release factors
RA AM260479 3,248,092 G→C intergenic (+43/‑175) h16_A3001 → / → hemK1 transcriptional regulator, LysR‑family/methylase of polypeptide chain release factors
RA AM260479 3,285,635 G→C G181R (GGC→CGC)  nadB → L‑Aspartate oxidase
RA AM260479 3,301,576 +G intergenic (+45/‑146) lspA → / → dfp lipoprotein signal peptidase II/phosphopantothenoylcysteine synthetase/decarboxylase
RA AM260479 3,302,920 +C coding (1199/1251 nt) dfp → phosphopantothenoylcysteine synthetase/decarboxylase
RA AM260479 3,333,763 +G coding (5/615 nt) serB2 → phosphoserine phosphatase
MC JC AM260479 3,399,144 Δ1,321 bp [leuS]h16_A3140 [leuS], h16_A3140
RA AM260479 3,461,712 +G coding (823/969 nt) h16_A3204 ← transcriptional regulator, LysR‑family
RA AM260479 3,515,018 C→G noncoding (32/75 nt) tRNA‑Pro (CGG) → tRNA‑Pro
RA AM260479 3,515,314 Δ1 bp intergenic (+253/‑570) tRNA‑Pro (CGG) → / → pilB tRNA‑Pro/Type IV pilus assembly protein PilB
RA AM260479 3,515,428 +C intergenic (+367/‑456) tRNA‑Pro (CGG) → / → pilB tRNA‑Pro/Type IV pilus assembly protein PilB
RA AM260479 3,529,526 +G intergenic (‑40/‑264) secA ← / → h16_A3265 preprotein translocase subunit SecA/Hypothetical protein
RA AM260479 3,529,607 +C intergenic (‑121/‑183) secA ← / → h16_A3265 preprotein translocase subunit SecA/Hypothetical protein
RA AM260479 3,602,642 +A intergenic (‑39/+87) h16_A3328 ← / ← h16_A3329 conserved hypothetical membrane protein/unassigned peptidase, M61 subfamily (glycyl aminopeptidase)
RA AM260479 3,602,688 (G)6→5 intergenic (‑85/+41) h16_A3328 ← / ← h16_A3329 conserved hypothetical membrane protein/unassigned peptidase, M61 subfamily (glycyl aminopeptidase)
RA AM260479 3,615,716 +C intergenic (+42/‑147) prfA → / → h16_A3341 protein chain release factor A (RF‑1)/Hypothetical protein
RA AM260479 3,615,722 +A intergenic (+48/‑141) prfA → / → h16_A3341 protein chain release factor A (RF‑1)/Hypothetical protein
RA AM260479 3,720,402 G→T D170Y (GAC→TAC)  h16_A3441 → periplasmic multimodular transpeptidase/transglycosylase
RA AM260479 3,905,524 G→C A1285G (GCC→GGC)  putA ← bifunctional proline dehydrogenase and proline oxidase
RA AM260479 3,972,184 +C intergenic (‑136/‑395) h16_A3682 ← / → h16_A3683 putative methyltransferase/Hypothetical protein
RA AM260479 3,983,831 C→T D23N (GAC→AAC)  ntrX ← response regulator containing a Fis‑type DNA‑binding domain, NtrX
RA AM260479 3,998,635 +C intergenic (‑221/+527) h16_A3705 ← / ← h16_A3706 transcriptional regulator, LysR‑family/conserved hypothetical protein
RA AM260480 69,908 +G intergenic (+89/‑184) h16_B0060 → / → h16_B0061 conserved hypothetical membrane protein/ABC‑type transporter, periplasmic component
RA AM260480 153,689 +G intergenic (‑67/+93) h16_B0133 ← / ← h16_B0134 conserved hypothetical protein/outer membrane protein (porin)
RA AM260480 157,096 +G intergenic (‑26/+41) h16_B0136 ← / ← h16_B0137 cysteine desulfurase/conserved hypothetical membrane protein
RA AM260480 159,381 +G intergenic (‑13/‑342) h16_B0138 ← / → h16_B0139 transcriptional regulator, IclR‑family/conserved hypothetical transmembrane protein
RA AM260480 159,389 +G intergenic (‑21/‑334) h16_B0138 ← / → h16_B0139 transcriptional regulator, IclR‑family/conserved hypothetical transmembrane protein
RA AM260480 164,760 C→T A15V (GCC→GTC)  acoR → transcriptional regulator of acetoin catabolism,PspF‑family
RA AM260480 274,470 (G)10→9 intergenic (+18/‑626) h16_B0246 → / → fhaB Hypothetical protein/filamentous hemagglutinin / adhesin
RA AM260480 293,407 T→A Y759N (TAC→AAC)  flhF → Flagellar GTP‑binding protein
RA AM260480 433,189 A→C R133R (CGA→CGC h16_B0381 → Acetyl‑CoA acetyltransferase
RA AM260480 507,425 +A coding (27/564 nt) h16_B0448 → fragment of ABC‑type transport system,periplasmic component: APC family
RA AM260480 635,877 T→C E259E (GAA→GAG fliM ← flagellar motor switch protein
RA AM260480 753,133 T→C K37E (AAG→GAG)  h16_B0675 ← Acyl‑CoA dehydrogenase,short‑chain specific
RA AM260480 919,006 T→G C159G (TGC→GGC)  h16_B0812 → hydrolase or acyltransferase (alpha/beta hydrolase superfamily)
RA AM260480 951,073 +G intergenic (‑29/+230) h16_B0838 ← / ← h16_B0839 conserved hypothetical protein/transcriptional regulator, CRP‑family
RA AM260480 963,917 Δ1 bp intergenic (+84/‑3) h16_B0849 → / → h16_B0850 Acyl‑CoA dehydrogenase/Acyl‑CoA dehydrogenase, short‑chain specific
RA AM260480 978,518 A→G S117G (AGC→GGC)  h16_B0862 → cytosine deaminase or related metal‑dependent hydrolase
RA AM260480 1,166,676 +G intergenic (+150/‑109) h16_B1032 → / → h16_B1033 conserved hypothetical protein/probable extra‑cytoplasmic solute receptor
RA AM260480 1,192,562 +C coding (163/594 nt) cccA → cytochrome c, mono‑or diheme variant
RA AM260480 1,326,746 +G intergenic (+47/‑123) h16_B1172 → / → h16_B1173 Amidase/MFS transporter
RA AM260480 1,326,751 +G intergenic (+52/‑118) h16_B1172 → / → h16_B1173 Amidase/MFS transporter
RA AM260480 1,326,761 +G intergenic (+62/‑108) h16_B1172 → / → h16_B1173 Amidase/MFS transporter
RA AM260480 2,018,102 +C intergenic (+111/+98) h16_B1778 → / ← h16_B1779 putative peptidase/putative peptidase, S33 family
RA AM260480 2,135,859 +C intergenic (‑237/‑97) h16_B1889 ← / → h16_B1890 transcriptional regulator, IclR‑family/APC transporter, AAT family
RA AM260480 2,295,879 T→A Q603L (CAG→CTG)  h16_B2042 ← Hypothetical protein
RA AM260480 2,308,233 (C)5→4 intergenic (+176/‑161) h16_B2050 → / → h16_B2051 response regulator containing a GGDEF effector domain/conserved hypothetical protein
RA AM260480 2,431,093 Δ1 bp coding (2380/2469 nt) h16_B2148 → membrane carboxypeptidase
RA AM260480 2,737,499 A→G intergenic (‑216/+28) h16_B2423 ← / ← h16_B2424 periplasmic solute binding protein/Hypothetical protein
RA AM260480 2,737,505 Δ1 bp intergenic (‑222/+22) h16_B2423 ← / ← h16_B2424 periplasmic solute binding protein/Hypothetical protein
RA AM260480 2,737,510 T→G intergenic (‑227/+17) h16_B2423 ← / ← h16_B2424 periplasmic solute binding protein/Hypothetical protein
RA AM260480 2,843,580 +G intergenic (‑1/+68) pip ← / ← h16_B2516 prolyl aminopeptidase/transcriptional regulator, LysR‑family
RA AY305378 682 C→A P190T (CCG→ACG)  hoxK → membrane‑bound [NiFe] hydrogenase small subunit
JC JC AY305378 84,810 ISAE1 (+) +8 bp [hoxW] [hoxW]

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ AM260479 55305 55332 28 2 [0] [1] 2 h16_A0040 predicted membrane protein
* * ÷ AM260479 89772 89827 56 2 [1] [0] 2 h16_A0074 transcriptional regulator, AraC‑family
* * ÷ AM260479 156375 156435 61 2 [0] [0] 5 [h16_A0142] [h16_A0142]
* * ÷ AM260479 159919 159934 16 2 [1] [1] 3 h16_A0146 conserved hypothetical protein
* * ÷ AM260479 254004 254024 21 9 [0] [0] 2 h16_A0240 Acetyltransferase (GNAT) family
* * ÷ AM260479 254330 254366 37 5 [1] [0] 2 h16_A0241 Uncharacterized protein, possibly involved in aromatic compounds catabolism
* * ÷ AM260479 313450 313453 4 4 [0] [1] 3 h16_A0296/gltR1 putative membrane associated dehydrogenase (flavoprotein)/response regulator of C4‑dicarboxylate transportsystem
* * ÷ AM260479 342052 342053 2 2 [1] [0] 2 amtB ammonium transporter
* * ÷ AM260479 370844 370852 9 2 [0] [0] 4 sco2 cytochrome oxidase assembly protein, Sco1/SenC family
* * ÷ AM260479 378886 378896 11 2 [0] [0] 4 h16_A0360/h16_A0361 response regulator with putative antiterminator output/putative fumarylacetoacetat hydroxylase
* * ÷ AM260479 381507 381643 137 2 [0] [0] 2 ftsY signal recognition particle receptor FtsY
* * ÷ AM260479 388431 388446 16 2 [0] [0] 2 rfbB1 dTDP‑D‑glucose 4,6‑dehydratase
* * ÷ AM260479 487027 487084 58 5 [1] [0] 2 h16_A0461 two domain protein: 3‑hydroxyacyl‑CoA dehydrogenase
* * ÷ AM260479 522631 522675 45 2 [1] [0] 2 ruvB holliday junction resolvasome, helicase subunit RuvB
* * ÷ AM260479 570426 570537 112 3 [1] [0] 2 h16_A0542/h16_A0543 signal transduction histidine kinase/response regulator, OmpR‑family
* * ÷ AM260479 663334 663376 43 3 [0] [0] 3 h16_A0625 outer membrane protein (porin)
* * ÷ AM260479 718102 718176 75 2 [1] [0] 2 h16_A0667 Sodium:sulfate symporter transmembrane region
* * ÷ AM260479 791450 791484 35 2 [0] [1] 2 h16_A0732 Beta‑propeller domains of methanol dehydrogenase‑type (homolog)
* * ÷ AM260479 857668 857679 12 2 [0] [1] 2 h16_A0786 predicted phosphatase
* * ÷ AM260479 1017304 1017315 12 2 [0] [0] 2 h16_A0921 Aerobic‑type carbon monoxide dehydrogenase homolog, small subunit
* * ÷ AM260479 1092572 1092577 6 3 [1] [0] 2 pepN alanyl aminopeptidase N
* * ÷ AM260479 1129310 1129392 83 2 [0] [1] 4 [h16_A1031] [h16_A1031]
* * ÷ AM260479 1191206 1191211 6 2 [0] [1] 2 h16_A1094 Hypothetical protein
* * ÷ AM260479 1206095 1206172 78 2 [1] [1] 3 h16_A1108 conserved hypothetical protein
* * ÷ AM260479 1243308 1243328 21 5 [0] [0] 2 h16_A1141 predicted permease, DMT superfamily
* * ÷ AM260479 1319170 1319193 24 2 [0] [0] 4 h16_A1213/suhB conserved hypothetical protein/inositol monophosphatase
* * ÷ AM260479 1380850 1380921 72 2 [1] [0] 2 h16_A1272 conserved hypothetical protein
* * ÷ AM260479 1381113 1381238 126 3 [1] [1] 3 h16_A1272 conserved hypothetical protein
* * ÷ AM260479 1535839 1535852 14 2 [0] [1] 3 h16_A1417 ABC‑type transporter, ATPase component: HAAT family
* * ÷ AM260479 1578923 1578947 25 2 [0] [0] 2 mfd/h16_A1456 Transcription‑repair coupling factor/4‑Diphosphocytidyl‑2‑methyl‑D‑erithritol synthase
* * ÷ AM260479 1647005 1647023 19 3 [1] [0] 2 [h16_A1515] [h16_A1515]
* * ÷ AM260479 1670865 1670885 21 4 [1] [1] 5 h16_A1536 conserved hypothetical protein
* * ÷ AM260479 1723480 1723481 2 2 [0] [0] 2 h16_A1589 transcriptional regulator, MocR family
* * ÷ AM260479 1847989 1848027 39 2 [1] [1] 3 h16_A1692/h16_A1693 conserved hypothetical protein/transcriptional regulator, LacI‑family
* * ÷ AM260479 1953144 1953159 16 2 [0] [0] 3 h16_A1789/h16_A1791 glycerol trinitrate reductase/predicted redox protein, regulator of disulfide bond formation
* * ÷ AM260479 1993262 1993368 107 2 [1] [1] 2 h16_A1831 Hypothetical protein
* * ÷ AM260479 2081625 2081671 47 5 [1] [0] 2 [h16_A1915] [h16_A1915]
* * ÷ AM260479 2154170 2154199 30 2 [0] [1] 3 h16_A1978/h16_A1979 conserved hypothetical protein/conserved hypothetical protein
* * ÷ AM260479 2208785 2208850 66 2 [0] [1] 2 h16_A2032 hypothetical membrane associated protein
* * ÷ AM260479 2253282 2253324 43 2 [0] [1] 4 h16_A2072 predicted permease
* * ÷ AM260479 2426120 2426148 29 2 [0] [1] 4 [lytT] [lytT]
* * ÷ AM260479 2463504 2463544 41 2 [1] [0] 2 h16_A2268/h16_A2269 uncharacterized conserved protein/bacterioferritin comigratory protein
* * ÷ AM260479 2595364 2595374 11 2 [0] [0] 2 dnaX DNA polymerase III tau/gamma subunit
* * ÷ AM260479 2878434 2878434 1 2 [0] [0] 2 parC Topoisomerase IV subunit A
* * ÷ AM260479 2909083 2909136 54 2 [0] [1] 4 h16_A2694 Serine/threonine protein kinase
* * ÷ AM260479 3032745 3032774 30 3 [1] [0] 2 h16_A2804 conserved hypothetical protein
* * ÷ AM260479 3058207 3058285 79 2 [0] [1] 2 h16_A2830 hypothetical membrane associated protein
* * ÷ AM260479 3341367 3341431 65 2 [1] [1] 2 [h16_A3087] [h16_A3087]
* * ÷ AM260479 3365809 3365842 34 2 [0] [1] 3 cG ATP‑dependent DNA helicase
* * ÷ AM260479 3366730 3366798 69 2 [0] [1] 3 cG ATP‑dependent DNA helicase
* * ÷ AM260479 3462495 3462535 41 3 [1] [0] 3 [h16_A3204] [h16_A3204]
* * ÷ AM260479 3482481 3482520 40 2 [0] [1] 4 h16_A3225/h16_A3226 ABC‑type transporter, ATPase and permease components/Hypothetical protein
* * ÷ AM260479 3554467 3554510 44 2 [1] [0] 2 h16_A3287 Hypothetical protein
* * ÷ AM260479 3597213 3597232 20 2 [0] [0] 5 h16_A3326 ABC‑type transporter, duplicated permease domains: TauT family
* * ÷ AM260479 3609128 3609201 74 2 [0] [1] 4 h16_A3334 conserved hypothetical protein
* * ÷ AM260479 3671706 3671736 31 2 [0] [0] 2 h16_A3390/h16_A3391 signal transduction histidine kinase/Hypothetical protein related to helicases
* * ÷ AM260479 3722912 3722995 84 2 [0] [1] 2 h16_A3442/lysA2 protein implicated in iron transport, frataxin homolog/diaminopimelate decarboxylase
* * ÷ AM260479 3857090 3857091 2 2 [0] [0] 2 h16_A3590 C4‑dicarboxylate transport protein
* * ÷ AM260479 3871534 3871602 69 3 [1] [1] 2 [h16_A3603] [h16_A3603]
* * ÷ AM260479 3911231 3911270 40 2 [0] [1] 2 priA Primosomal protein N'
* * ÷ AM260480 81705 81742 38 4 [0] [2] 4 [h16_B0073] [h16_B0073]
* * ÷ AM260480 174665–175127 180009–175130 4–5345 4 [2] [2] 3 rrsD–[rrfD] rrsD,tRNA‑Ile (GAT),tRNA‑Ala (TGC),rrlD,[rrfD]
* * ÷ AM260480 193533 193619 87 4 [2] [2] 4 h16_B0168 putative multidrug resistance protein
* * ÷ AM260480 287723 287758 36 4 [2] [2] 3 h16_B0251/flhB1 Lipoprotein/flagellar biosynthesis protein
* * ÷ AM260480 334546 334584 39 4 [2] [2] 4 h16_B0298/h16_B0299 transcriptional regulator, LysR‑family/putative glucose/sorbosone dehydrogenase
* * ÷ AM260480 571270 571288 19 3 [2] [0] 4 h16_B0507 Hypothetical protein
* * ÷ AM260480 633603 633665 63 8 [0] [2] 4 [fliQ] [fliQ]
* * ÷ AM260480 752012 752055 44 4 [2] [2] 3 h16_B0674/h16_B0675 conserved hypothetical protein/Acyl‑CoA dehydrogenase,short‑chain specific
* * ÷ AM260480 860301 860332 32 4 [2] [2] 4 h16_B0761/h16_B0762 transcriptional regulator, TetR/AcrR‑family/conserved hypothetical membrane protein
* * ÷ AM260480 867733–869615 872730–869620 6–4998 5 [2] [1] 3 [rrsE]–[rrfE] [rrsE],tRNA‑Ile (GAT),tRNA‑Ala (TGC),rrlE,[rrfE]
* * ÷ AM260480 1086832 1086884 53 4 [2] [1] 5 h16_B0964 conserved hypothetical protein
* * ÷ AM260480 1208433 1208533 101 3 [2] [0] 3 h16_B1068 conserved hypothetical protein
* * ÷ AM260480 1222264 1222294 31 4 [2] [2] 4 h16_B1080/tyrB2 Hypothetical protein/tyrosine aminotransferase
* * ÷ AM260480 1319229 1319268 40 4 [0] [2] 4 h16_B1167/h16_B1168 Hypothetical protein/conserved hypothetical protein
* * ÷ AM260480 1416956 1417009 54 3 [2] [2] 4 [h16_B1257] [h16_B1257]
* * ÷ AM260480 1434810 1434852 43 3 [1] [1] 3 h16_B1277 hypothetical membrane associated protein
* * ÷ AM260480 1465454 1465529 76 3 [2] [1] 3 h16_B1311 Hypothetical protein
* * ÷ AM260480 1482245 1482289 45 8 [1] [2] 4 h16_B1335 Acyl‑CoA synthetase (AMP‑forming)/AMP‑acid ligase II
* * ÷ AM260480 1808129 1808160 32 3 [1] [2] 4 h16_B1604 predicted phosphohydrolase
* * ÷ AM260480 1861307 1861323 17 4 [2] [0] 5 h16_B1648 Hypothetical protein
* * ÷ AM260480 2139643 2139695 53 5 [2] [2] 6 dadA7 D‑amino‑acid dehydrogenase
* * ÷ AM260480 2459876 2459908 33 4 [2] [2] 3 h16_B2171 Glycosyltransferase, probably involved in cell wall biogenesis
* * ÷ AM260480 2532176 2532207 32 3 [2] [2] 5 bkdA1 2‑Oxoisovalerate dehydrogenase E1 component,alpha subunit
* * ÷ AM260480 2866432 2866468 37 3 [0] [2] 4 h16_B2539 conserved hypothetical protein
* * ÷ AY305378 69642 69651 10 4 [0] [0] 2 hypC2/gmhA HypC2/putative sedoheptulose 7‑phosphate isomerase
* * ÷ AY305378 85312 85334 23 2 [0] [0] 2 hoxI HoxI
* * ÷ AY305378 99506 99539 34 3 [1] [0] 2 kfrA1 putative KfrA protein
* * ÷ AY305378 99937 100063 127 2 [0] [0] 2 kfrA1 putative KfrA protein
* * ÷ AY305378 100146 100288–100286 141–143 2 [0] [1] 3 [kfrA1]–[PHG106] [kfrA1],[PHG106]
* * ÷ AY305378 151823 151868 46 3 [1] [1] 2 PHG152/PHG153 conserved hypothetical protein/conserved hypothetical protein
* * ÷ AY305378 156580 156701 122 3 [1] [1] 2 kfrA2 putative KfrA‑like protein
* * ÷ AY305378 261514 261521 8 2 [0] [1] 2 norR sigma 54 dependent transcriptional activator
* * ÷ AY305378 346769 346815 47 3 [1] [0] 2 PHG331 conserved hypothetical protein
* * ÷ AY305378 451836 451847 12 2 [0] [0] 2 cbbLp/– ribulose‑1,5‑bisphosphate carboxylase/oxygenase large subunit/–

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 = 19745816 (0.570)4 (0.150) 4/196 2.0 20.1% coding (171/2028 nt) accC1 biotin carboxylase
?AM260479 = 197469 17 (0.650)coding (182/2028 nt) accC1 biotin carboxylase
* ? AM260479 = 163155829 (1.030)5 (0.200) 5/192 1.7 23.1% coding (465/963 nt) h16_A1503 permease of the drug/metabolite transporter (DMT) superfamily
?AM260479 = 1631620 7 (0.280)coding (403/963 nt) h16_A1503 permease of the drug/metabolite transporter (DMT) superfamily
* ? AM260479 = 176571612 (0.430)6 (0.230) 6/196 1.5 33.2% coding (309/2826 nt) h16_A1623 molecular chaperone
?AM260479 = 1765746 13 (0.500)coding (279/2826 nt) h16_A1623 molecular chaperone
* ? AM260479 2746850 =16 (0.570)5 (0.190) 5/196 1.7 23.9% coding (354/414 nt) exbD1 biopolymer transport protein
?AM260479 2746873 = 17 (0.650)coding (377/414 nt) exbD1 biopolymer transport protein
* ? AM260479 3208755 =27 (0.960)8 (0.310) 6/194 1.5 22.0% coding (581/969 nt) cbiB cobalamin biosynthesis protein (CbiB)
?AM260479 3208790 = 32 (1.240)coding (616/969 nt) cbiB cobalamin biosynthesis protein (CbiB)
* ? AM260479 3700270 =9 (0.320)5 (0.200) 5/192 1.7 26.9% coding (492/780 nt) ttg2B ABC‑type transporter, permease component involved in toluene tolerance
?AM260479 3700457 = 19 (0.750)coding (305/780 nt) ttg2B ABC‑type transporter, permease component involved in toluene tolerance
* ? AM260479 3846016 =13 (0.460)3 (0.120) 3/192 2.2 20.8% coding (83/1266 nt) hcaD Uncharacterized NAD(FAD)‑dependent dehydrogenase
?AM260479 3846078 = 11 (0.430)coding (21/1266 nt) hcaD Uncharacterized NAD(FAD)‑dependent dehydrogenase
* ? AM260479 4036814 =16 (0.570)4 (0.160) 4/194 2.0 21.8% coding (55/1281 nt) h16_A3733 conserved hypothetical protein
?AM260479 4036962 = 14 (0.540)coding (1297/1353 nt) h16_A3734 conserved hypothetical protein
* ? AM260480 = 36074623 (0.700)4 (0.130) 4/196 2.3 20.9% coding (1290/1605 nt) h16_B0322 aldehyde dehydrogenase, NAD‑dependent
?AM260480 = 360969 9 (0.300)coding (1067/1605 nt) h16_B0322 aldehyde dehydrogenase, NAD‑dependent
* ? AM260480 = 110701717 (0.520)4 (0.130) 4/194 2.3 21.9% coding (168/1452 nt) gabD1 Succinate‑semialdehyde dehydrogenase (NADP+)
?AM260480 = 1107039 13 (0.440)coding (190/1452 nt) gabD1 Succinate‑semialdehyde dehydrogenase (NADP+)
* ? AM260480 2564349 =18 (0.550)4 (0.150) 4/206 1.6 21.3% coding (1361/3738 nt) narG2 respiratory nitrate reductase alpha chain (NarG)
?AY305378 288727 = 12 (0.570)coding (1384/3762 nt) narG respiratory nitrate reductase catalytic subunit
* ? AM260480 = 266350929 (0.890)5 (0.170) 5/192 2.0 21.6% coding (651/2733 nt) h16_B2352 ATP‑dependent DNA ligase
?AM260480 = 2663631 10 (0.340)coding (773/2733 nt) h16_B2352 ATP‑dependent DNA ligase
* ? AM260480 = 289994319 (0.580)5 (0.170) 5/194 2.0 22.5% coding (553/1281 nt) h16_B2569 Putative MFS transporter
?AM260480 = 2899965 17 (0.570)coding (531/1281 nt) h16_B2569 Putative MFS transporter