Wed Feb  4 20:44:59 2026

/usr/bin/breseq-0.35.4-Linux-x86_64/bin/breseq -j 4 --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -o breseq_processes/0 -r /var/data/ae015451_pham1.gb -r /var/data/pS4413_qbsFH.gb /var/alemutpipe-outputs/good/HL2KG8_4_S84_L002_R1_001.good.fq /var/alemutpipe-outputs/good/HL2KG8_4_S84_L002_R2_001.good.fq