mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 195,559 | C→A | 40.5% | T355T (ACC→ACA) | PP_0168 → | putative surface adhesion protein |
| RA | 195,589 | T→C | 16.1% | N365N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,595 | C→G | 12.5% | T367T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 195,629 | A→G | 12.8% | T379A (ACC→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,634 | C→T | 48.8% | T380T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 196,132 | G→C | 20.9% | T546T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,159 | G→A | 14.3% | T555T (ACG→ACA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,285 | T→C | 11.4% | T597T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,759 | T→C | 19.9% | T755T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,879 | G→A | 31.8% | V795V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,885 | C→T | 18.2% | T797T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 196,927 | A→C | 15.2% | T811T (ACA→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,972 | G→A | 16.1% | K826K (AAG→AAA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,990 | T→C | 6.4% | D832D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,032 | C→T | 6.6% | T846T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 197,089 | T→C | 19.0% | N865N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,128 | T→C | 6.2% | D878D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,129 | G→A | 6.0% | A879T (GCC→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,179 | A→G | 10.1% | V895V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,224 | A→G | 15.2% | V910V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,506 | T→C | 14.1% | N1004N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,524 | A→G | 13.0% | V1010V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,551 | C→G | 19.2% | T1019T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,572 | G→A | 30.5% | K1026K (AAG→AAA) | PP_0168 → | putative surface adhesion protein |
| RA | 197,632 | T→C | 27.2% | T1046T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,866 | G→C | 23.3% | A1124A (GCG→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,869 | T→C | 33.1% | G1125G (GGT→GGC) | PP_0168 → | putative surface adhesion protein |
| RA | 199,915 | T→C | 18.0% | F1807F (TTT→TTC) | PP_0168 → | putative surface adhesion protein |
| RA | 200,338 | G→C | 10.8% | V1948V (GTG→GTC) | PP_0168 → | putative surface adhesion protein |
| RA | 205,789 | C→T | 9.3% | G3765G (GGC→GGT) | PP_0168 → | putative surface adhesion protein |
| RA | 210,799 | T→C | 20.2% | D5435D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 278,742:1 | +A | 100% | intergenic (‑237/+77) | PP_0224 ← / ← sctC | Monooxygenase, DszC family/sulfur compound ABC transporter ‑ ATP‑binding subunit |
| RA | 307,865:1 | +C | 100% | intergenic (+880/‑989) | hslO → / → PP_0254 | 33 kDa chaperonin/conserved protein of unknown function |
| RA | 336,124:1 | +T | 100% | coding (209/237 nt) | PP_0278 → | conserved protein of unknown function |
| RA | 353,067 | A→G | 100% | intergenic (+34/+84) | hisF → / ← cbcV | Imidazole glycerol phosphate synthase subunit HisF/choline / betaine / carnitine ABC transporter ‑ ATP binding subunit |
| RA | 499,203 | A→G | 100% | intergenic (+47/‑249) | uhpA → / → PP_0411 | DNA‑binding response regulator UhpA/Polyamine ABC transporter, ATP‑binding protein |
| RA | 699,722 | A→G | 41.5% | intergenic (+115/‑129) | PP_t06 → / → PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| JC | 867,950 | 45 bp→7 bp | 9.9% | intergenic (+48/+85) | PP_0750 → / ← mqo‑I | conserved protein of unknown function/malate:quinone oxidoreductase |
| RA | 1,070,246:1 | +GA | 100% | intergenic (+46/+96) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger related‑protein |
| RA | 1,126,645:1 | +C | 100% | intergenic (‑99/+50) | tdcG‑II ← / ← gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| RA | 1,327,121 | C→T | 56.5% | intergenic (+97/‑196) | PP_16SE → / → PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| RA | 1,419,548:1 | +C | 100% | intergenic (‑37/+99) | PP_1242 ← / ← PP_1244 | conserved protein of unknown function/conserved protein of unknown function |
| RA | 1,499,480 | 2 bp→AC | 100% | intergenic (+57/‑106) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| RA | 1,499,498 | 1 bp→CG | 100% | intergenic (+75/‑89) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| RA | 1,499,506:1 | +C | 100% | intergenic (+83/‑81) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| RA | 1,530,160 | C→T | 11.4% | R395C (CGT→TGT) noncoding (49/244 nt) |
ftsZ → PP_mr19 → |
Cell division protein FtsZ Xoo8 ncRNA |
| RA | 1,530,173 | A→C | 100% | *399S (TAA→TCA) noncoding (62/244 nt) |
ftsZ → PP_mr19 → |
Cell division protein FtsZ Xoo8 ncRNA |
| JC | 1,780,067 | Δ62 bp | 13.6% | intergenic (+26/+19) | PP_1587 → / ← dapC | NhaP‑type Na+/H+ and K+/H+ antiporters/N‑succinyl‑L,L‑diaminopimelate aminotransferase alternative |
| RA | 1,932,638:1 | +C | 100% | intergenic (‑105/+45) | rluA ← / ← minE | 23S rRNA (746) and tRNA (32) pseudouridine synthase/Cell division topological specificity factor |
| RA | 2,550,125 | G→A | 55.5% | noncoding (1436/1522 nt) | PP_16SF → | 16S ribosomal RNA |
| RA | 3,151,990 | A→C | 27.3% | T49P (ACC→CCC) | PP_2768 → | putative Branched‑chain amino acid ABC transporter, permease protein |
| RA | 3,212,276 | T→C | 35.0% | *189W (TGA→TGG) ‡ | PP_2816 ← | putative Transcriptional regulator NfxB |
| RA | 3,212,278 | A→T | 27.8% | *189R (TGA→AGA) ‡ | PP_2816 ← | putative Transcriptional regulator NfxB |
| RA | 3,212,281 | A→T | 23.8% | Y188N (TAT→AAT) | PP_2816 ← | putative Transcriptional regulator NfxB |
| RA | 3,212,283 | G→A | 24.0% | P187L (CCC→CTC) | PP_2816 ← | putative Transcriptional regulator NfxB |
| RA | 3,692,619 | T→A | 23.5% | Q336L (CAG→CTG) | PP_3259 ← | Acyl‑CoA dehydrogenase‑related protein |
| RA | 3,845,703:1 | +G | 100% | intergenic (‑70/+28) | PP_3394 ← / ← PP_3395 | putative 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/Transcriptional regulator, LysR family |
| RA | 3,951,159 | T→C | 100% | intergenic (‑123/+72) | PP_3486 ← / ← PP_3487 | putative cytochrome c/conserved exported protein of unknown function |
| RA | 3,951,161 | A→T | 100% | intergenic (‑125/+70) | PP_3486 ← / ← PP_3487 | putative cytochrome c/conserved exported protein of unknown function |
| RA | 4,348,705 | A→G | 61.0% | intergenic (‑70/+404) | PP_3820 ← / ← galU | Group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| RA | 4,454,592 | C→T | 10.3% | R4H (CGC→CAC) | nicS ← | HTH‑type transcriptional repressor NicS |
| RA | 4,577,672 | C→T | 8.2% | L320L (CTG→TTG) | PP_4057 → | conserved membrane protein of unknown function with autotransporter beta‑domain |
| RA | 4,586,030 | 2 bp→TC | 100% | intergenic (+113/+101) | PP_4061 → / ← PP_4063 | conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase |
| RA | 4,586,033:1 | +G | 100% | intergenic (+116/+99) | PP_4061 → / ← PP_4063 | conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase |
| RA | 4,586,056:1 | +C | 100% | intergenic (+139/+76) | PP_4061 → / ← PP_4063 | conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase |
| RA | 4,635,590 | T→C | 40.0% | K56E (AAA→GAA) | uvrY ← | two‑componenent system BarA/UvrY ‑ regulatory subunit |
| RA | 4,740,805 | Δ1 bp | 100% | intergenic (+42/+711) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,816 | T→G | 100% | intergenic (+53/+700) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,819 | 2 bp→CT | 100% | intergenic (+56/+696) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,229 | A→C | 100% | intergenic (+466/+287) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,245 | A→C | 100% | intergenic (+482/+271) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,254:1 | +T | 20.0% | intergenic (+491/+262) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,255 | C→T | 80.0% | intergenic (+492/+261) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,257 | A→C | 80.0% | intergenic (+494/+259) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,258 | A→G | 20.0% | intergenic (+495/+258) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,260 | C→G | 79.9% | intergenic (+497/+256) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,261 | A→C | 80.0% | intergenic (+498/+255) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,263 | A→C | 100% | intergenic (+500/+253) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,272 | A→G | 100% | intergenic (+509/+244) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,274 | A→C | 100% | intergenic (+511/+242) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,276 | G→C | 100% | intergenic (+513/+240) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,278 | C→T | 100% | intergenic (+515/+238) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,283:1 | +T | 100% | intergenic (+520/+233) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,289 | C→G | 100% | intergenic (+526/+227) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,292 | C→T | 100% | intergenic (+529/+224) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,294 | C→G | 100% | intergenic (+531/+222) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,296 | A→C | 100% | intergenic (+533/+220) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,298 | C→T | 100% | intergenic (+535/+218) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,964,454 | C→T | 100% | D302N (GAC→AAC) | fleQ ← | Transcriptional regulator FleQ |
| JC | 4,980,585 | +GGC | 100% | intergenic (‑24/+44) | PP_4387 ← / ← flgE | conserved exported protein of unknown function/Flagellar hook protein FlgE |
| JC | 5,201,568 | Δ98 bp | 37.4% | intergenic (‑54/‑29) | PP_4582 ← / → PP_4583 | conserved membrane protein of unknown function/putative Peptidase |
| JC | 5,555,608 | +GCC | 100% | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | conserved protein of unknown function/putative methyl‑accepting chemotaxis transducer |
| RA | 5,674,750:1 | +G | 100% | intergenic (+112/+28) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding protein, acidic stress response factor |
| RA | 5,674,753 | G→C | 100% | intergenic (+115/+25) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding protein, acidic stress response factor |
| JC | 5,681,415 | +CGGG | 100% | intergenic (‑133/+71) | PP_4986 ← / ← PP_4987 | Channel protein, hemolysin III family/putative Chemotaxis protein |
| RA | 5,988,760 | C→G | 14.8% | intergenic (+54/‑492) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,763 | C→G | 14.8% | intergenic (+57/‑489) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,809 | G→A | 32.0% | intergenic (+103/‑443) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,889 | C→A | 27.2% | intergenic (+183/‑363) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,894 | C→T | 23.8% | intergenic (+188/‑358) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,895 | A→G | 24.1% | intergenic (+189/‑357) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,905 | T→C | 24.2% | intergenic (+199/‑347) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,911 | Δ1 bp | 21.6% | intergenic (+205/‑341) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 6,013,885 | T→C | 100% | intergenic (+90/+20) | xpt → / ← PP_5266 | Xanthine phosphoribosyltransferase/putative acetyl‑CoA hydrolase family protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AE015451 | 486334 | 486437 | 104 | 5 [4] | [4] 5 | apaG/rsmA | CO2+/MG2+ efflux protein/Ribosomal RNA small subunit methyltransferase A |
| * | * | ÷ | AE015451 | 790164 | 790343 | 180 | 5 [4] | [4] 7 | [PP_0676] | [PP_0676] |
| * | * | ÷ | AE015451 | 926441 | 926576 | 136 | 5 [4] | [4] 5 | PP_0805 | Outer membrane efflux protein |
| * | * | ÷ | AE015451 | 965609 | 965676 | 68 | 5 [4] | [4] 5 | ptxC | putative phosphonate transport system permease protein PtxC |
| * | * | ÷ | AE015451 | 968724 | 968870 | 147 | 6 [3] | [4] 5 | PP_0831/PP_t68 | hypothetical protein/tRNA‑Leu |
| * | * | ÷ | AE015451 | 1367579 | 1367857 | 279 | 7 [1] | [4] 5 | PP_1193 | conserved membrane protein of unknown function |
| * | * | ÷ | AE015451 | 1421691 | 1421981 | 291 | 5 [4] | [3] 5 | PP_1246 | conserved exported protein of unknown function |
| * | * | ÷ | AE015451 | 1544257 | 1544493 | 237 | 5 [4] | [4] 5 | [mdfA] | [mdfA] |
| * | * | ÷ | AE015451 | 1691088 | 1691214 | 127 | 5 [3] | [2] 5 | PP_1487 | conserved protein of unknown function |
| * | * | ÷ | AE015451 | 1934135 | 1934295 | 161 | 5 [4] | [3] 5 | minC | Probable septum site‑determining protein MinC |
| * | * | ÷ | AE015451 | 2027416 | 2027523 | 108 | 5 [4] | [4] 5 | wbpL | Glycosyl transferase WbpL |
| * | * | ÷ | AE015451 | 2033272–2033292 | 2033723–2033332 | 41–452 | 5 [4] | [4] 6 | pgi‑I | glucose‑6‑phosphate isomerase |
| * | * | ÷ | AE015451 | 2038183 | 2038362 | 180 | 5 [4] | [2] 5 | [rffE] | [rffE] |
| * | * | ÷ | AE015451 | 2039432 | 2039677 | 246 | 5 [4] | [4] 6 | [rffE]–[PP_1812] | [rffE],[PP_1812] |
| * | * | ÷ | AE015451 | 2053429 | 2053616 | 188 | 5 [4] | [3] 5 | [PP_1828] | [PP_1828] |
| * | * | ÷ | AE015451 | 2073325 | 2073445 | 121 | 5 [4] | [4] 5 | [PP_1847] | [PP_1847] |
| * | * | ÷ | AE015451 | 2095136 | 2095284 | 149 | 5 [4] | [4] 6 | [alaA] | [alaA] |
| * | * | ÷ | AE015451 | 2142335 | 2142509 | 175 | 5 [4] | [4] 5 | [PP_1897] | [PP_1897] |
| * | * | ÷ | AE015451 | 2478374 | 2478500 | 127 | 5 [4] | [3] 5 | PP_2172 | conserved exported protein of unknown function |
| * | * | ÷ | AE015451 | 2569413 | 2569615 | 203 | 6 [4] | [3] 6 | [PP_2252] | [PP_2252] |
| * | * | ÷ | AE015451 | 2865434 | 2865590 | 157 | 5 [4] | [4] 6 | [glllA] | [glllA] |
| * | * | ÷ | AE015451 | 2960798 | 2960972 | 175 | 6 [4] | [3] 5 | PP_2590 | Outer membrane ferric siderophore receptor |
| * | * | ÷ | AE015451 | 3443446 | 3443571 | 126 | 6 [4] | [4] 5 | PP_3062 | putative Pyocin R2_PP, tail length determination protein |
| * | * | ÷ | AE015451 | 3848803 | 3848920 | 118 | 5 [4] | [4] 5 | PP_3397 | conserved exported protein of unknown function |
| * | * | ÷ | AE015451 | 3985546 | 3985706 | 161 | 6 [4] | [4] 5 | [PP_3513] | [PP_3513] |
| * | * | ÷ | AE015451 | 4705257 | 4705403 | 147 | 6 [4] | [4] 5 | [kdpF] | [kdpF] |
| * | * | ÷ | AE015451 | 4805163 | 4805358 | 196 | 5 [4] | [4] 5 | PP_4234 | Aldehyde oxidase and xanthine dehydrogenase |
| * | * | ÷ | AE015451 | 4839226 | 4839347 | 122 | 5 [4] | [4] 5 | ccoP‑I/PP_4254 | cytochrome c oxidase subunit, cbb3‑type/conserved protein of unknown function |
| * | * | ÷ | AE015451 | 5168109 | 5168269 | 161 | 5 [3] | [4] 5 | hrpA/PP_4547 | ATP‑dependent helicase HrpA/putative Glutamine synthetase |
| * | * | ÷ | AE015451 | 5343484–5343533 | 5343623–5343573 | 41–140 | 5 [4] | [4] 6 | pgi‑II | glucose‑6‑phosphate isomerase |
| * | * | ÷ | AE015451 | 5389517 | 5389595 | 79 | 5 [4] | [4] 7 | dld2/PP_4738 | D‑lactate dehydrogenase/conserved exported protein of unknown function |
| * | * | ÷ | AE015451 | 5401417 | 5401533 | 117 | 5 [4] | [4] 5 | PP_4743/PP_4745 | conserved protein of unknown function/transposase |
| * | * | ÷ | AE015451 | 5660582 | 5660679 | 98 | 5 [3] | [4] 5 | ligB | DNA ligase B |
| * | * | ÷ | AE015451 | 5691833 | 5692009 | 177 | 5 [4] | [2] 5 | PP_4994 | conserved protein of unknown function |
| * | * | ÷ | AE015451 | 5696558 | 5696721 | 164 | 6 [4] | [4] 5 | pyrC'/hslV | dihydroorotase‑like protein/peptidase component of the ATP‑dependent HslVU protease |
| * | * | ÷ | AE015451 | 5816964 | 5817134 | 171 | 6 [4] | [2] 5 | pilT | twitching motility protein |
| * | * | ÷ | AE015451 | 5835130 | 5835269 | 140 | 6 [4] | [4] 5 | [PP_5113]–[PP_5114] | [PP_5113],[PP_5114] |
| * | * | ÷ | AE015451 | 5858332 | 5858529 | 198 | 5 [3] | [4] 7 | PP_5134 | conserved protein of unknown function |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 395366 | 27 (1.050) | 3 (0.120) | 3/302 | NT | 11.2% | coding (748/1200 nt) | fdhA | formaldehyde dehydrogenase |
| ? | AE015451 | = 395394 | 22 (0.900) | coding (776/1200 nt) | fdhA | formaldehyde dehydrogenase | |||||
| * | ? | AE015451 | 409939 = | 35 (1.360) | 3 (0.120) | 3/302 | NT | 9.6% | coding (725/2646 nt) | aceE | Pyruvate dehydrogenase E1 component |
| ? | AE015451 | 410027 = | 23 (0.940) | coding (637/2646 nt) | aceE | Pyruvate dehydrogenase E1 component | |||||
| * | ? | AE015451 | 459279 = | 26 (1.010) | 3 (0.120) | 3/298 | NT | 8.7% | coding (576/912 nt) | pqqB | Coenzyme PQQ synthesis protein B |
| ? | AE015451 | 459831 = | 39 (1.620) | coding (24/912 nt) | pqqB | Coenzyme PQQ synthesis protein B | |||||
| * | ? | AE015451 | 470897 = | 19 (0.740) | 3 (0.120) | 3/304 | NT | 13.6% | coding (60/3744 nt) | PP_0386 | Sensory box protein |
| ? | AE015451 | 470946 = | 20 (0.810) | coding (11/3744 nt) | PP_0386 | Sensory box protein | |||||
| * | ? | AE015451 | = 516759 | 26 (1.010) | 3 (0.120) | 3/306 | NT | 9.8% | coding (233/783 nt) | PP_0429 | Oxidoreductase, short chain dehydrogenase/reductase family |
| ? | AE015451 | = 516797 | 30 (1.210) | coding (195/783 nt) | PP_0429 | Oxidoreductase, short chain dehydrogenase/reductase family | |||||
| * | ? | AE015451 | 611504 = | NA (NA) | 7 (0.280) | 7/304 | NT | NA | coding (401/966 nt) | PP_0526 | transposase |
| ? | AE015451 | 611533 = | NA (NA) | coding (430/966 nt) | PP_0526 | transposase | |||||
| * | ? | AE015451 | 617541 = | 57 (2.210) | 3 (0.120) | 3/304 | NT | 5.2% | coding (869/981 nt) | PP_0531 | hypothetical protein |
| ? | AE015451 | 617572 = | 54 (2.190) | coding (900/981 nt) | PP_0531 | hypothetical protein | |||||
| * | ? | AE015451 | 769920 = | 13 (0.500) | 3 (0.120) | 3/308 | NT | 18.4% | coding (513/885 nt) | PP_0661 | putative Transcriptional regulator AmpR |
| ? | AE015451 | 769949 = | 14 (0.560) | coding (542/885 nt) | PP_0661 | putative Transcriptional regulator AmpR | |||||
| * | ? | AE015451 | 786616 = | 34 (1.320) | 3 (0.130) | 3/290 | NT | 8.8% | intergenic (+38/‑267) | PP_0673/ettA | conserved protein of unknown function/ADP/ATP ratio sensor and inhibitor of translation |
| ? | AE015451 | 786676 = | 31 (1.320) | intergenic (+98/‑207) | PP_0673/ettA | conserved protein of unknown function/ADP/ATP ratio sensor and inhibitor of translation | |||||
| * | ? | AE015451 | 881673 = | 23 (0.890) | 4 (0.160) | 3/300 | NT | 16.4% | coding (1188/1887 nt) | PP_0765 | conserved exported protein of unknown function |
| ? | AE015451 | 881743 = | 19 (0.780) | coding (1258/1887 nt) | PP_0765 | conserved exported protein of unknown function | |||||
| * | ? | AE015451 | = 1045952 | 10 (0.390) | 5 (0.200) | 5/302 | NT | 29.9% | coding (2426/3045 nt) | PP_0906 | putative Multidrug efflux RND transporter |
| ? | AE015451 | = 1046016 | 14 (0.570) | coding (2362/3045 nt) | PP_0906 | putative Multidrug efflux RND transporter | |||||
| * | ? | AE015451 | 1084429 = | 29 (1.130) | 3 (0.120) | 3/298 | NT | 10.3% | coding (254/852 nt) | PP_0939 | Carbon‑nitrogen hydrolase family protein |
| ? | AE015451 | 1084512 = | 25 (1.040) | coding (337/852 nt) | PP_0939 | Carbon‑nitrogen hydrolase family protein | |||||
| * | ? | AE015451 | 1296784 = | NA (NA) | 11 (0.450) | 9/304 | NT | NA | intergenic (‑537/‑29) | nhaA‑I/PP_1133 | Na(+)/H(+) antiporter NhaA 1/transposase |
| ? | AE015451 | 1296822 = | NA (NA) | coding (10/1329 nt) | PP_1133 | transposase | |||||
| * | ? | AE015451 | = 1411412 | 21 (0.810) | 4 (0.160) | 4/300 | NT | 16.7% | coding (523/1437 nt) | PP_1232 | conserved exported protein of unknown function |
| ? | AE015451 | = 1411433 | 20 (0.820) | coding (502/1437 nt) | PP_1232 | conserved exported protein of unknown function | |||||
| * | ? | AE015451 | 1428994 = | 29 (1.130) | 3 (0.120) | 3/302 | NT | 10.6% | coding (1095/1584 nt) | mqo‑II | malate:quinone oxidoreductase |
| ? | AE015451 | 1429099 = | 23 (0.940) | coding (1200/1584 nt) | mqo‑II | malate:quinone oxidoreductase | |||||
| * | ? | AE015451 | = 1587163 | 17 (0.660) | 4 (0.160) | 4/308 | NT | 20.3% | coding (243/909 nt) | PP_1391 | Transcriptional regulator, LysR family |
| ? | AE015451 | = 1587173 | 15 (0.600) | coding (233/909 nt) | PP_1391 | Transcriptional regulator, LysR family | |||||
| * | ? | AE015451 | = 1612861 | 11 (0.430) | 3 (0.120) | 3/298 | NT | 19.8% | coding (658/693 nt) | ung | Uracil‑DNA glycosylase |
| ? | AE015451 | = 1612883 | 14 (0.580) | coding (680/693 nt) | ung | Uracil‑DNA glycosylase | |||||
| * | ? | AE015451 | 1737987 = | 48 (1.860) | 18 (0.780) | 14/284 | NT | 32.5% | coding (32/348 nt) | yffB | putative glutathione‑dependent thiol reductase |
| ? | AE015451 | = 1777401 | 32 (1.390) | intergenic (+135/+157) | PP_5476/PP_1585 | conserved protein of unknown function/putative Antidote protein | |||||
| * | ? | AE015451 | 1797362 = | 34 (1.320) | 4 (0.160) | 4/306 | NT | 10.7% | coding (63/777 nt) | lpxA | Acyl‑[acyl‑carrier‑protein]‑‑UDP‑N‑ acetylglucosamine O‑acyltransferase |
| ? | AE015451 | 1797450 = | 34 (1.370) | coding (151/777 nt) | lpxA | Acyl‑[acyl‑carrier‑protein]‑‑UDP‑N‑ acetylglucosamine O‑acyltransferase | |||||
| * | ? | AE015451 | 1811415 = | 18 (0.700) | 3 (0.140) | 3/272 | NT | 18.0% | intergenic (+22/+106) | ispD/PP_1615 | 2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/Transcriptional regulator, LysR family |
| ? | AE015451 | 1811495 = | 12 (0.540) | intergenic (+102/+26) | ispD/PP_1615 | 2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/Transcriptional regulator, LysR family | |||||
| * | ? | AE015451 | = 2279018 | 27 (1.050) | 3 (0.120) | 3/302 | NT | 10.2% | coding (158/2082 nt) | fadH | 2,4‑dienoyl‑CoA reductase |
| ? | AE015451 | = 2279057 | 27 (1.100) | coding (197/2082 nt) | fadH | 2,4‑dienoyl‑CoA reductase | |||||
| * | ? | AE015451 | = 2472115 | 19 (0.740) | 5 (0.200) | 5/304 | NT | 23.7% | intergenic (+19/+130) | PP_2166/PP_2167 | Anti‑anti‑sigma factor/putative PhoD‑like phosphatase |
| ? | AE015451 | 2472313 = | 14 (0.570) | coding (1783/1851 nt) | PP_2167 | putative PhoD‑like phosphatase | |||||
| * | ? | AE015451 | 2509159 = | 16 (0.620) | 3 (0.120) | 3/308 | NT | 14.5% | coding (855/885 nt) | copB‑I | copper resistance protein B |
| ? | AE015451 | 2509309 = | 20 (0.800) | coding (705/885 nt) | copB‑I | copper resistance protein B | |||||
| * | ? | AE015451 | 2560052 = | 18 (0.700) | 3 (0.120) | 3/298 | NT | 14.7% | coding (14/603 nt) | PP_2243 | conserved protein of unknown function |
| ? | AE015451 | 2560094 = | 18 (0.750) | coding (56/603 nt) | PP_2243 | conserved protein of unknown function | |||||
| * | ? | AE015451 | 2748791 = | 26 (1.010) | 3 (0.120) | 3/300 | NT | 12.4% | coding (66/276 nt) | PP_2404 | conserved exported protein of unknown function |
| ? | AE015451 | 2748910 = | 18 (0.740) | coding (185/276 nt) | PP_2404 | conserved exported protein of unknown function | |||||
| * | ? | AE015451 | = 3052494 | 15 (0.580) | 3 (0.120) | 3/304 | NT | 15.7% | coding (1194/1899 nt) | PP_2664 | putative hybrid sensor and regulator, histidine kinase |
| ? | AE015451 | = 3052505 | 18 (0.730) | coding (1205/1899 nt) | PP_2664 | putative hybrid sensor and regulator, histidine kinase | |||||
| * | ? | AE015451 | = 3134882 | 24 (0.930) | 3 (0.120) | 3/306 | NT | 11.3% | coding (935/1341 nt) | PP_2751 | conserved exported protein of unknown function |
| ? | AE015451 | = 3134950 | 24 (0.970) | coding (1003/1341 nt) | PP_2751 | conserved exported protein of unknown function | |||||
| * | ? | AE015451 | 3398276 = | 23 (0.890) | 3 (0.120) | 3/300 | NT | 12.3% | coding (757/819 nt) | PP_3002 | shikimate dehydrogenase‑related enzyme |
| ? | AE015451 | 3398411 = | 21 (0.860) | coding (69/438 nt) | aroQ‑III | 3‑dehydroquinate dehydratase 3, type II | |||||
| * | ? | AE015451 | = 3538215 | 38 (1.470) | 3 (0.120) | 3/302 | NT | 7.8% | coding (37/1116 nt) | PP_5587 | conserved protein of unknown function |
| ? | AE015451 | = 3538223 | 35 (1.430) | coding (45/1116 nt) | PP_5587 | conserved protein of unknown function | |||||
| * | ? | AE015451 | = 3614175 | 24 (0.930) | 3 (0.120) | 3/304 | NT | 11.3% | coding (48/648 nt) | pet | Pet18 protein |
| ? | AE015451 | = 3614176 | 24 (0.970) | coding (49/648 nt) | pet | Pet18 protein | |||||
| * | ? | AE015451 | 3617570 = | 32 (1.240) | 3 (0.120) | 3/304 | NT | 8.3% | coding (595/1170 nt) | PP_3188 | conserved protein of unknown function |
| ? | AE015451 | 3617599 = | 36 (1.460) | coding (624/1170 nt) | PP_3188 | conserved protein of unknown function | |||||
| * | ? | AE015451 | = 3674369 | 21 (0.810) | 4 (0.160) | 4/300 | NT | 14.1% | coding (187/573 nt) | PP_3238 | putative Transcriptional regulator PyrR |
| ? | AE015451 | = 3674401 | 29 (1.190) | coding (155/573 nt) | PP_3238 | putative Transcriptional regulator PyrR | |||||
| * | ? | AE015451 | = 3744686 | 18 (0.700) | 5 (0.200) | 5/304 | NT | 22.6% | coding (970/1002 nt) | paoB | promiscuous aromatic aldehyde dehydrogenase, FAD‑binding subunit |
| ? | AE015451 | = 3744689 | 17 (0.690) | coding (973/1002 nt) | paoB | promiscuous aromatic aldehyde dehydrogenase, FAD‑binding subunit | |||||
| * | ? | AE015451 | 3910887 = | 31 (1.200) | 3 (0.120) | 3/304 | NT | 9.7% | coding (197/840 nt) | PP_3451 | conserved exported protein of unknown function |
| ? | AE015451 | 3910927 = | 26 (1.060) | coding (237/840 nt) | PP_3451 | conserved exported protein of unknown function | |||||
| * | ? | AE015451 | 3947913 = | 23 (0.890) | 3 (0.140) | 3/262 | NT | 15.0% | coding (136/1797 nt) | PP_3483 | putative Type II secretion system protein |
| ? | AE015451 | 3947998 = | 15 (0.710) | coding (51/1797 nt) | PP_3483 | putative Type II secretion system protein | |||||
| * | ? | AE015451 | = 4158769 | 26 (1.010) | 3 (0.120) | 3/304 | NT | 11.8% | coding (779/1062 nt) | PP_3661 | conserved membrane protein of unknown function, UPF0324 family |
| ? | AE015451 | = 4158850 | 20 (0.810) | coding (860/1062 nt) | PP_3661 | conserved membrane protein of unknown function, UPF0324 family | |||||
| * | ? | AE015451 | 4160673 = | 10 (0.390) | 3 (0.120) | 3/310 | NT | 16.3% | intergenic (+39/+82) | PP_3662/PP_3663 | conserved protein of unknown function/GGDEF domain protein |
| ? | AE015451 | 4160817 = | 21 (0.840) | coding (1240/1302 nt) | PP_3663 | GGDEF domain protein | |||||
| * | ? | AE015451 | 4338572 = | 26 (1.010) | 4 (0.160) | 4/302 | NT | 12.0% | coding (244/294 nt) | PP_5632 | enzyme subunit involved in allo‑isoleucine metabolism |
| ? | AE015451 | 4338688 = | 34 (1.390) | coding (128/294 nt) | PP_5632 | enzyme subunit involved in allo‑isoleucine metabolism | |||||
| * | ? | AE015451 | 4535670 = | 24 (0.930) | 3 (0.120) | 3/302 | NT | 13.1% | intergenic (+197/‑618) | PP_4022/PP_4024 | conserved protein of unknown function/transposase |
| ? | AE015451 | 4535721 = | 17 (0.690) | intergenic (+248/‑567) | PP_4022/PP_4024 | conserved protein of unknown function/transposase | |||||
| * | ? | AE015451 | 4689601 = | 15 (0.580) | 4 (0.170) | 4/296 | NT | 21.6% | coding (481/1605 nt) | yejF | microcin C transporter ‑ ATP binding subunit |
| ? | AE015451 | 4689640 = | 15 (0.630) | coding (520/1605 nt) | yejF | microcin C transporter ‑ ATP binding subunit | |||||
| * | ? | AE015451 | 4808174 = | 0 (0.000) | 6 (0.300) | 3/248 | NT | 46.2% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | = 5988935 | 14 (0.700) | intergenic (+229/‑317) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | = 4808179 | 0 (0.000) | 14 (0.590) | 9/294 | NT | 59.6% | intergenic (‑288/‑267) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | 5988765 = | 19 (0.800) | intergenic (+59/‑487) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | = 4945197 | 28 (1.090) | 5 (0.200) | 5/304 | NT | 20.9% | intergenic (+557/+241) | PP_5673/flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein |
| ? | AE015451 | 4945389 = | 11 (0.450) | intergenic (+749/+49) | PP_5673/flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein | |||||
| * | ? | AE015451 | = 5232679 | 21 (0.810) | 3 (0.130) | 3/282 | NT | 14.4% | coding (17/1578 nt) | PP_4610 | conserved protein of unknown function containing PepSY‑associated TM helix domain |
| ? | AE015451 | = 5232661 | 17 (0.740) | coding (35/1578 nt) | PP_4610 | conserved protein of unknown function containing PepSY‑associated TM helix domain | |||||
| * | ? | AE015451 | = 5325153 | 15 (0.580) | 4 (0.170) | 4/290 | NT | 23.1% | coding (66/279 nt) | PP_4685 | conserved protein of unknown function |
| ? | AE015451 | = 5325139 | 13 (0.550) | coding (52/279 nt) | PP_4685 | conserved protein of unknown function | |||||
| * | ? | AE015451 | = 5509910 | 21 (0.810) | 3 (0.130) | 3/278 | NT | 14.9% | coding (109/1488 nt) | urtB | putative Urea ABC transporter |
| ? | AE015451 | = 5509890 | 16 (0.710) | coding (89/1488 nt) | urtB | putative Urea ABC transporter | |||||
| * | ? | AE015451 | = 5512576 | 28 (1.090) | 3 (0.120) | 3/304 | NT | 10.2% | coding (212/858 nt) | urtD | putative Urea ABC transporter, ATP‑binding protein |
| ? | AE015451 | = 5512713 | 26 (1.060) | coding (349/858 nt) | urtD | putative Urea ABC transporter, ATP‑binding protein | |||||
| * | ? | AE015451 | = 5559582 | 17 (0.660) | 4 (0.180) | 4/278 | NT | 21.7% | coding (915/1188 nt) | hisZ | ATP phosphoribosyltransferase regulatory subunit |
| ? | AE015451 | = 5559562 | 14 (0.620) | coding (935/1188 nt) | hisZ | ATP phosphoribosyltransferase regulatory subunit | |||||
| * | ? | AE015451 | = 5559942 | 29 (1.130) | 4 (0.170) | 3/298 | NT | 12.9% | coding (555/1188 nt) | hisZ | ATP phosphoribosyltransferase regulatory subunit |
| ? | AE015451 | = 5559943 | 27 (1.120) | coding (554/1188 nt) | hisZ | ATP phosphoribosyltransferase regulatory subunit | |||||
| * | ? | AE015451 | = 5988771 | 20 (0.780) | 6 (0.250) | 6/302 | NT | 25.0% | intergenic (+65/‑481) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| ? | AE015451 | 5988963 = | 17 (0.690) | intergenic (+257/‑289) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | = 6029016 | 34 (1.320) | 3 (0.130) | 3/296 | NT | 10.1% | coding (445/1494 nt) | kauB | 4‑guanidinobutyraldehyde dehydrogenase |
| ? | AE015451 | = 6029199 | 22 (0.920) | coding (262/1494 nt) | kauB | 4‑guanidinobutyraldehyde dehydrogenase | |||||
| * | ? | AE015451 | 6032294 = | 23 (0.890) | 3 (0.130) | 3/296 | NT | 11.7% | coding (1148/1590 nt) | dppA‑IV | periplasmic dipeptide transport protein |
| ? | AE015451 | 6032394 = | 24 (1.000) | coding (1248/1590 nt) | dppA‑IV | periplasmic dipeptide transport protein | |||||
| * | ? | AE015451 | 6041683 = | 31 (1.200) | 3 (0.120) | 3/302 | NT | 10.4% | coding (241/723 nt) | rph | Ribonuclease PH |
| ? | AE015451 | 6041753 = | 22 (0.900) | coding (171/723 nt) | rph | Ribonuclease PH | |||||
| * | ? | AE015451 | 6049480 = | 33 (1.280) | 3 (0.120) | 3/302 | NT | 9.2% | coding (342/2109 nt) | spoT | bifunctional (p)ppGpp synthase/hydrolase |
| ? | AE015451 | 6049563 = | 28 (1.140) | coding (425/2109 nt) | spoT | bifunctional (p)ppGpp synthase/hydrolase | |||||