breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
RA 6,332 C→A 6.3% R17R (CGG→CGT trmE ← GTPase
RA 6,339 T→A 8.0% Q15L (CAG→CTG)  trmE ← GTPase
RA 6,346 T→G 5.7% T13P (ACG→CCG)  trmE ← GTPase
RA 65,069 G→T 5.7% G43C (GGC→TGC)  betA‑I → choline dehydrogenase
RA 195,424 G→A 9.9% V310V (GTG→GTA PP_0168 → putative surface adhesion protein
RA 195,505 C→G 12.2% A337A (GCC→GCG PP_0168 → putative surface adhesion protein
RA 195,559 C→A 28.6% T355T (ACC→ACA PP_0168 → putative surface adhesion protein
RA 195,589 T→C 11.2% N365N (AAT→AAC PP_0168 → putative surface adhesion protein
RA 195,634 C→T 28.0% T380T (ACC→ACT PP_0168 → putative surface adhesion protein
RA 195,685 T→C 11.2% T397T (ACT→ACC PP_0168 → putative surface adhesion protein
RA 195,724 A→G 9.7% V410V (GTA→GTG PP_0168 → putative surface adhesion protein
RA 195,732 A→C 18.2% N413T (AAC→ACC)  PP_0168 → putative surface adhesion protein
RA 195,766 G→C 9.2% A424A (GCG→GCC PP_0168 → putative surface adhesion protein
RA 195,769 T→C 11.5% G425G (GGT→GGC PP_0168 → putative surface adhesion protein
RA 195,826 C→T 10.0% G444G (GGC→GGT PP_0168 → putative surface adhesion protein
RA 195,852 G→A 10.2% S453N (AGC→AAC)  PP_0168 → putative surface adhesion protein
RA 195,895 G→C 8.6% T467T (ACG→ACC PP_0168 → putative surface adhesion protein
RA 196,027 T→C 11.1% T511T (ACT→ACC PP_0168 → putative surface adhesion protein
RA 196,132 G→C 13.4% T546T (ACG→ACC PP_0168 → putative surface adhesion protein
RA 196,195 G→C 6.1% T567T (ACG→ACC PP_0168 → putative surface adhesion protein
RA 196,234 T→C 12.6% T580T (ACT→ACC PP_0168 → putative surface adhesion protein
RA 196,285 T→C 7.8% T597T (ACT→ACC PP_0168 → putative surface adhesion protein
RA 196,306 T→C 22.4% N604N (AAT→AAC PP_0168 → putative surface adhesion protein
RA 196,327 A→C 17.4% T611T (ACA→ACC PP_0168 → putative surface adhesion protein
RA 196,351 C→G 24.7% T619T (ACC→ACG PP_0168 → putative surface adhesion protein
RA 196,390 T→C 20.6% D632D (GAT→GAC PP_0168 → putative surface adhesion protein
RA 196,489 T→C 18.7% N665N (AAT→AAC PP_0168 → putative surface adhesion protein
RA 196,495 G→C 16.8% T667T (ACG→ACC PP_0168 → putative surface adhesion protein
RA 196,579 G→A 35.3% V695V (GTG→GTA PP_0168 → putative surface adhesion protein
RA 196,627 A→C 21.7% T711T (ACA→ACC PP_0168 → putative surface adhesion protein
RA 196,672 G→A 16.7% K726K (AAG→AAA PP_0168 → putative surface adhesion protein
RA 196,705 G→C 11.0% A737A (GCG→GCC PP_0168 → putative surface adhesion protein
RA 196,759 T→C 25.3% T755T (ACT→ACC PP_0168 → putative surface adhesion protein
RA 196,885 C→T 18.2% T797T (ACC→ACT PP_0168 → putative surface adhesion protein
RA 196,924 G→A 13.3% V810V (GTG→GTA PP_0168 → putative surface adhesion protein
RA 196,927 A→C 18.5% T811T (ACA→ACC PP_0168 → putative surface adhesion protein
RA 196,951 C→G 11.1% T819T (ACC→ACG PP_0168 → putative surface adhesion protein
RA 196,972 G→A 18.1% K826K (AAG→AAA PP_0168 → putative surface adhesion protein
RA 196,990 T→C 9.2% D832D (GAT→GAC PP_0168 → putative surface adhesion protein
RA 197,032 C→T 6.1% T846T (ACC→ACT PP_0168 → putative surface adhesion protein
RA 197,089 T→C 19.5% N865N (AAT→AAC PP_0168 → putative surface adhesion protein
RA 197,128 T→C 8.0% D878D (GAT→GAC PP_0168 → putative surface adhesion protein
RA 197,129 G→A 7.0% A879T (GCC→ACC)  PP_0168 → putative surface adhesion protein
RA 197,134 C→T 9.5% T880T (ACC→ACT PP_0168 → putative surface adhesion protein
RA 197,179 A→G 18.7% V895V (GTA→GTG PP_0168 → putative surface adhesion protein
RA 197,185 C→T 5.5% T897T (ACC→ACT PP_0168 → putative surface adhesion protein
RA 197,479 G→A 7.6% V995V (GTG→GTA PP_0168 → putative surface adhesion protein
RA 197,496 T→C 14.6% I1001T (ATC→ACC)  PP_0168 → putative surface adhesion protein
RA 197,590 T→C 13.5% D1032D (GAT→GAC PP_0168 → putative surface adhesion protein
RA 197,632 T→C 28.4% T1046T (ACT→ACC PP_0168 → putative surface adhesion protein
RA 197,695 G→C 9.7% T1067T (ACG→ACC PP_0168 → putative surface adhesion protein
RA 197,866 G→C 21.1% A1124A (GCG→GCC PP_0168 → putative surface adhesion protein
RA 197,869 T→C 18.3% G1125G (GGT→GGC PP_0168 → putative surface adhesion protein
RA 199,360 T→C 9.4% A1622A (GCT→GCC PP_0168 → putative surface adhesion protein
RA 199,477 T→C 6.6% A1661A (GCT→GCC PP_0168 → putative surface adhesion protein
RA 199,480 T→C 12.2% G1662G (GGT→GGC PP_0168 → putative surface adhesion protein
RA 199,550 T→C 15.2% L1686L (TTG→CTG)  PP_0168 → putative surface adhesion protein
RA 199,744 T→C 6.4% N1750N (AAT→AAC PP_0168 → putative surface adhesion protein
RA 199,915 T→C 7.0% F1807F (TTT→TTC PP_0168 → putative surface adhesion protein
RA 200,338 G→C 7.0% V1948V (GTG→GTC PP_0168 → putative surface adhesion protein
RA 200,386 C→T 6.5% D1964D (GAC→GAT PP_0168 → putative surface adhesion protein
RA 200,650 T→C 7.4% D2052D (GAT→GAC PP_0168 → putative surface adhesion protein
RA 201,859 G→C 7.1% A2455A (GCG→GCC PP_0168 → putative surface adhesion protein
RA 202,117 T→C 11.0% S2541S (AGT→AGC PP_0168 → putative surface adhesion protein
RA 203,674 T→C 6.7% D3060D (GAT→GAC PP_0168 → putative surface adhesion protein
RA 203,677 T→C 5.8% G3061G (GGT→GGC PP_0168 → putative surface adhesion protein
RA 205,651 C→G 6.6% V3719V (GTC→GTG PP_0168 → putative surface adhesion protein
RA 205,795 T→A 7.2% A3767A (GCT→GCA PP_0168 → putative surface adhesion protein
RA 205,801 C→G 5.1% V3769V (GTC→GTG PP_0168 → putative surface adhesion protein
RA 206,311 G→C 6.6% V3939V (GTG→GTC PP_0168 → putative surface adhesion protein
RA 211,096 C→G 7.8% V5534V (GTC→GTG PP_0168 → putative surface adhesion protein
RA 213,079 C→T 8.4% G6195G (GGC→GGT PP_0168 → putative surface adhesion protein
RA 213,601 G→C 5.4% V6369V (GTG→GTC PP_0168 → putative surface adhesion protein
RA 214,075 G→A 6.9% P6527P (CCG→CCA PP_0168 → putative surface adhesion protein
RA 215,377 C→T 6.0% A6961A (GCC→GCT PP_0168 → putative surface adhesion protein
RA 215,383 A→G 8.1% E6963E (GAA→GAG PP_0168 → putative surface adhesion protein
RA 278,742:1 +A 100% intergenic (‑237/+77) PP_0224 ← / ← sctC Monooxygenase, DszC family/sulfur compound ABC transporter ‑ ATP‑binding subunit
JC 303,121 +GCT 41.7% coding (1286/1314 nt) envZ → Osmolarity sensor protein EnvZ
RA 307,865:1 +C 100% intergenic (+880/‑989) hslO → / → PP_0254 33 kDa chaperonin/conserved protein of unknown function
RA 336,124:1 +T 100% coding (209/237 nt) PP_0278 → conserved protein of unknown function
RA 353,067 A→G 100% intergenic (+34/+84) hisF → / ← cbcV Imidazole glycerol phosphate synthase subunit HisF/choline / betaine / carnitine ABC transporter ‑ ATP binding subunit
RA 499,203 A→G 100% intergenic (+47/‑249) uhpA → / → PP_0411 DNA‑binding response regulator UhpA/Polyamine ABC transporter, ATP‑binding protein
RA 699,722 A→G 50.8% intergenic (+115/‑129) PP_t06 → / → PP_23SD tRNA‑Ala/23S ribosomal RNA
RA 1,070,246:1 +GA 100% intergenic (+46/+96) aroP‑I → / ← PP_0928 aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger related‑protein
RA 1,126,645:1 +C 100% intergenic (‑99/+50) tdcG‑II ← / ← gcvP‑I L‑serine dehydratase/glycine dehydrogenase
JC 1,195,377 30 bp→17 bp 9.3% coding (1516‑1545/1653 nt) uxpA → Lipoprotein UxpA
RA 1,327,121 C→T 59.9% intergenic (+97/‑196) PP_16SE → / → PP_23SE 16S ribosomal RNA/23S ribosomal RNA
RA 1,349,365 C→A 5.6% D20Y (GAC→TAC)  PP_1174 ← conserved protein of unknown function
RA 1,419,548:1 +C 100% intergenic (‑37/+99) PP_1242 ← / ← PP_1244 conserved protein of unknown function/conserved protein of unknown function
RA 1,499,480 2 bp→AC 100% intergenic (+57/‑106) trpS → / → zapE Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain
RA 1,499,498 1 bp→CG 100% intergenic (+75/‑89) trpS → / → zapE Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain
RA 1,499,506:1 +C 100% intergenic (+83/‑81) trpS → / → zapE Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain
RA 1,530,160 C→T 100% R395C (CGT→TGT) 
noncoding (49/244 nt)
ftsZ →
PP_mr19 →
Cell division protein FtsZ
Xoo8 ncRNA
JC 1,531,732 Δ107 bp 23.3% coding (38‑144/630 nt) PP_1344 ← conserved protein of unknown function
RA 1,617,782 C→G 11.3% intergenic (‑37/+136) PP_1417 ← / ← PP_1418 putative Tricarboxylate transport protein TctB/putative Tricarboxylate transport protein TctC
JC 1,780,067 Δ62 bp 17.4% intergenic (+26/+19) PP_1587 → / ← dapC NhaP‑type Na+/H+ and K+/H+ antiporters/N‑succinyl‑L,L‑diaminopimelate aminotransferase alternative
RA 1,844,166 T→A 100% K210* (AAG→TAG)  gacS ← Sensor protein GacS
JC 1,930,392 Δ63 bp 5.8% [apeB] [apeB]
RA 1,932,638:1 +C 100% intergenic (‑105/+45) rluA ← / ← minE 23S rRNA (746) and tRNA (32) pseudouridine synthase/Cell division topological specificity factor
RA 1,962,159:1 +C 7.4% coding (422/1833 nt) PP_1760 → ABC transporter, ATP‑binding protein
RA 2,087,428 G→A 9.6% intergenic (+241/+677) PP_1865 → / ← aroH transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase
RA 2,550,125 G→A 56.2% noncoding (1436/1522 nt) PP_16SF → 16S ribosomal RNA
JC 2,958,772 Δ61 bp 7.0% intergenic (+38/+44) PP_2589 → / ← PP_2590 Aldehyde dehydrogenase family protein/Outer membrane ferric siderophore receptor
RA 3,142,272 C→T 100% A74V (GCG→GTG)  PP_2758 → putative Ribose ABC transporter, periplasmic ribose‑binding protein
RA 3,319,193 G→A 16.7% intergenic (‑157/+35) treSA ← / ← PP_2919 trehalose synthase A/Transcriptional regulator, LysR family
RA 3,845,703:1 +G 100% intergenic (‑70/+28) PP_3394 ← / ← PP_3395 putative 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/Transcriptional regulator, LysR family
RA 3,951,159 T→C 100% intergenic (‑123/+72) PP_3486 ← / ← PP_3487 putative cytochrome c/conserved exported protein of unknown function
RA 3,951,161 A→T 100% intergenic (‑125/+70) PP_3486 ← / ← PP_3487 putative cytochrome c/conserved exported protein of unknown function
RA 4,022,806 C→G 7.0% intergenic (‑501/+167) PP_3547 ← / ← emrB putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit
RA 4,022,807 C→G 6.9% intergenic (‑502/+166) PP_3547 ← / ← emrB putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit
RA 4,348,705 A→G 48.5% intergenic (‑70/+404) PP_3820 ← / ← galU Group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA 4,586,030 2 bp→TC 100% intergenic (+113/+101) PP_4061 → / ← PP_4063 conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase
RA 4,586,033:1 +G 100% intergenic (+116/+99) PP_4061 → / ← PP_4063 conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase
RA 4,586,056:1 +C 100% intergenic (+139/+76) PP_4061 → / ← PP_4063 conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase
RA 4,740,805 Δ1 bp 100% intergenic (+42/+711) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,740,816 T→G 100% intergenic (+53/+700) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,740,819 2 bp→CT 100% intergenic (+56/+696) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,228:1 +C 27.3% intergenic (+465/+288) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,229 A→C 72.7% intergenic (+466/+287) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,230 A→G 27.3% intergenic (+467/+286) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,231 C→G 70.9% intergenic (+468/+285) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,232 C→T 29.1% intergenic (+469/+284) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,234 C→T 69.1% intergenic (+471/+282) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,235 C→T 30.9% intergenic (+472/+281) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,236 G→T 69.0% intergenic (+473/+280) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,237 C→G 69.1% intergenic (+474/+279) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,238 C→G 30.9% intergenic (+475/+278) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,239 A→G 69.1% intergenic (+476/+277) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,240 A→C 30.9% intergenic (+477/+276) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,241 C→T 30.9% intergenic (+478/+275) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,243 G→T 67.2% intergenic (+480/+273) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,244 C→G 67.3% intergenic (+481/+272) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,245 A→C 67.3% intergenic (+482/+271) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,254:1 +T 17.2% intergenic (+491/+262) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,255 C→T 82.8% intergenic (+492/+261) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,257 A→C 82.7% intergenic (+494/+259) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,258 A→G 17.2% intergenic (+495/+258) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,260 C→G 82.7% intergenic (+497/+256) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,261 A→C 82.8% intergenic (+498/+255) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,263 A→C 100% intergenic (+500/+253) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,272 A→G 100% intergenic (+509/+244) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,274 A→C 100% intergenic (+511/+242) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,276 G→C 100% intergenic (+513/+240) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,278 C→T 100% intergenic (+515/+238) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,283:1 +T 100% intergenic (+520/+233) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,289 C→G 100% intergenic (+526/+227) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,292 C→T 100% intergenic (+529/+224) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,294 C→G 100% intergenic (+531/+222) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,296 A→C 100% intergenic (+533/+220) gltA → / ← yeiW citrate synthase/putative oxidoreductase
RA 4,741,298 C→T 100% intergenic (+535/+218) gltA → / ← yeiW citrate synthase/putative oxidoreductase
JC 4,775,320 Δ160 bp 5.6% coding (3788‑3947/10413 nt) pvdD ← non‑ribosomal peptide synthetase
RA 4,808,173 G→A 30.6% intergenic (‑282/‑273) PP_4234 ← / → dsbD‑II Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2
JC 4,808,175 Δ14 bp 100% intergenic (‑284/‑258) PP_4234 ← / → dsbD‑II Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2
JC 4,808,177 Δ103 bp 72.7% intergenic (‑286/‑167) PP_4234 ← / → dsbD‑II Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2
JC 4,864,374 Δ63 bp 9.7% coding (1437‑1499/3489 nt) smc ← Chromosome partition protein Smc
RA 4,945,358 T→C 22.1% intergenic (+718/+80) PP_5673 → / ← flhB putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein
RA 4,945,368 A→G 24.6% intergenic (+728/+70) PP_5673 → / ← flhB putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein
RA 4,945,370 C→T 24.2% intergenic (+730/+68) PP_5673 → / ← flhB putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein
RA 4,964,454 C→T 100% D302N (GAC→AAC)  fleQ ← Transcriptional regulator FleQ
JC 4,980,585 +GGC 100% intergenic (‑24/+44) PP_4387 ← / ← flgE conserved exported protein of unknown function/Flagellar hook protein FlgE
JC 5,201,568 Δ98 bp 39.2% intergenic (‑54/‑29) PP_4582 ← / → PP_4583 conserved membrane protein of unknown function/putative Peptidase
JC 5,555,608 +GCC 100% intergenic (‑84/+87) PP_4887 ← / ← PP_4888 conserved protein of unknown function/putative methyl‑accepting chemotaxis transducer
RA 5,664,432 G→C 6.8% intergenic (+27/+24) PP_4971 → / ← PP_4972 putative Outer membrane‑bound lytic murein transglycolase A/conserved exported protein of unknown function
RA 5,674,750:1 +G 100% intergenic (+112/+28) rhlE‑II → / ← yceI ATP‑dependent RNA helicase/polyisoprene‑binding protein, acidic stress response factor
RA 5,674,753 G→C 100% intergenic (+115/+25) rhlE‑II → / ← yceI ATP‑dependent RNA helicase/polyisoprene‑binding protein, acidic stress response factor
JC 5,681,415 +CGGG 100% intergenic (‑133/+71) PP_4986 ← / ← PP_4987 Channel protein, hemolysin III family/putative Chemotaxis protein
RA 5,749,256 T→C 5.1% T242A (ACC→GCC)  typA ← ribosome associated GTPase
JC 5,859,118 40 bp→40 bp 7.4% coding (829‑868/1026 nt) PP_5135 ← ABC transporter, periplasmic binding protein
RA 6,013,885 T→C 100% intergenic (+90/+20) xpt → / ← PP_5266 Xanthine phosphoribosyltransferase/putative acetyl‑CoA hydrolase family protein
RA 6,050,487 C→G 6.0% P450R (CCG→CGG)  spoT → bifunctional (p)ppGpp synthase/hydrolase
JC 6,077,996 +TACT 8.7% coding (1230/1290 nt) PP_5330 ← Major facilitator family transporter
RA 6,132,525 T→C 20.9% E443G (GAG→GGG)  copA‑II ← copper resistance protein A
RA 6,132,542 A→G 16.8% D437D (GAT→GAC copA‑II ← copper resistance protein A
RA 6,151,153 T→C 5.6% V55A (GTC→GCC)  PP_5395 → conserved protein of unknown function

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ AE015451 486307 486478 172 18 [17] [17] 18 [apaG] [apaG]
* * ÷ AE015451 726776 726944 169 18 [13] [17] 18 PP_0620/PP_0621 GntR family transcriptional regulator/conserved protein of unknown function
* * ÷ AE015451 926349 926559 211 19 [16] [17] 18 PP_0805 Outer membrane efflux protein
* * ÷ AE015451 1367557 1367918 362 19 [17] [17] 18 [PP_1193] [PP_1193]
* * ÷ AE015451 1421685 1422106 422 18 [17] [16] 18 PP_1246 conserved exported protein of unknown function
* * ÷ AE015451 1544220 1544494 275 18 [17] [13] 18 [mdfA] [mdfA]
* * ÷ AE015451 1691034 1691258 225 19 [17] [17] 18 [PP_1487] [PP_1487]
* * ÷ AE015451 2027359 2027615 257 18 [16] [16] 18 wbpL Glycosyl transferase WbpL
* * ÷ AE015451 2038128 2038477 350 18 [17] [16] 18 [rffE] [rffE]
* * ÷ AE015451 2039460 2039718 259 19 [17] [17] 18 [rffE]–[PP_1812] [rffE],[PP_1812]
* * ÷ AE015451 2053401 2053670 270 18 [17] [17] 19 [PP_1828]–[PP_1829] [PP_1828],[PP_1829]
* * ÷ AE015451 2095107 2095331 225 18 [17] [17] 19 [alaA] [alaA]
* * ÷ AE015451 2142198 2142592 395 18 [15] [17] 18 [PP_1897]–[PP_1898] [PP_1897],[PP_1898]
* * ÷ AE015451 2478330 2478550 221 19 [17] [17] 20 PP_2172 conserved exported protein of unknown function
* * ÷ AE015451 3848803 3849070 268 18 [16] [17] 21 PP_3397 conserved exported protein of unknown function
* * ÷ AE015451 3985486 3985752 267 18 [17] [17] 18 [PP_3513]–[oplB] [PP_3513],[oplB]
* * ÷ AE015451 4705255 4705416 162 18 [16] [15] 18 [kdpF] [kdpF]
* * ÷ AE015451 4839197 4839381 185 23 [17] [17] 18 [PP_4254] [PP_4254]
* * ÷ AE015451 5660455 5660679 225 18 [17] [17] 19 ligB DNA ligase B
* * ÷ AE015451 5696550 5696783 234 18 [16] [17] 18 [hslV] [hslV]
* * ÷ AE015451 5816935 5817185 251 18 [17] [17] 18 [pilT] [pilT]
* * ÷ AE015451 6005830 6006138 309 19 [17] [17] 18 ydcJ metalloprotein, putative enzyme

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 5133 =67 (1.160)4 (0.070) 4/324 NT 5.8% coding (1250/1371 nt) trmE GTPase
?AE015451 5218 = 66 (1.210)coding (1165/1371 nt) trmE GTPase
* ? AE015451 = 514167 (1.160)7 (0.130) 6/324 NT 9.8% coding (1242/1371 nt) trmE GTPase
?AE015451 = 5208 66 (1.210)coding (1175/1371 nt) trmE GTPase
* ? AE015451 = 5182856 (0.970)5 (0.100) 5/310 NT 8.9% coding (162/1272 nt) czcC‑I cobalt‑zinc‑cadmium resistance protein
?AE015451 = 51812 51 (0.980)coding (178/1272 nt) czcC‑I cobalt‑zinc‑cadmium resistance protein
* ? AE015451 94636 =57 (0.990)6 (0.110) 6/324 NT 9.8% coding (450/489 nt) PP_0085 conserved protein of unknown function
?AE015451 94723 = 57 (1.040)coding (363/489 nt) PP_0085 conserved protein of unknown function
* ? AE015451 106074 =47 (0.820)3 (0.050) 3/326 NT 6.7% intergenic (+148/‑60) cynT/PP_0101 carbonic anhydrase/putative sulfate transporter
?AE015451 106096 = 39 (0.710)intergenic (+170/‑38) cynT/PP_0101 carbonic anhydrase/putative sulfate transporter
* ? AE015451 128652 =22 (0.380)3 (0.060) 3/310 NT 13.1% coding (1130/2748 nt) polA DNA polymerase I, 5' ‑> 3' polymerase with 5' ‑‑> 3' and 3' ‑‑> 5' exonuclease activity
?AE015451 128668 = 20 (0.380)coding (1146/2748 nt) polA DNA polymerase I, 5' ‑> 3' polymerase with 5' ‑‑> 3' and 3' ‑‑> 5' exonuclease activity
* ? AE015451 199488 =62 (1.080)5 (0.090) 5/332 NT 7.6% coding (4994/26049 nt) PP_0168 putative surface adhesion protein
?AE015451 199512 = 62 (1.110)coding (5018/26049 nt) PP_0168 putative surface adhesion protein
* ? AE015451 200330 =57 (0.990)6 (0.110) 5/326 NT 9.9% coding (5836/26049 nt) PP_0168 putative surface adhesion protein
?AE015451 209635 = NA (NA)coding (15141/26049 nt) PP_0168 putative surface adhesion protein
* ? AE015451 = 20231768 (1.180)4 (0.070) 3/326 NT 5.8% coding (7823/26049 nt) PP_0168 putative surface adhesion protein
?AE015451 = 208957 NA (NA)coding (14463/26049 nt) PP_0168 putative surface adhesion protein
* ? AE015451 = 204045NA (NA)4 (0.070) 3/326 NT 18.1% coding (9551/26049 nt) PP_0168 putative surface adhesion protein
?AE015451 = 204062 19 (0.330)coding (9568/26049 nt) PP_0168 putative surface adhesion protein
* ? AE015451 = 208067NA (NA)5 (0.090) 5/326 NT NA coding (13573/26049 nt) PP_0168 putative surface adhesion protein
?AE015451 = 209370 NA (NA)coding (14876/26049 nt) PP_0168 putative surface adhesion protein
* ? AE015451 248876 =46 (0.800)6 (0.120) 6/302 NT 14.4% coding (457/633 nt) PP_0198 putative transporter
?AE015451 248896 = 31 (0.610)coding (477/633 nt) PP_0198 putative transporter
* ? AE015451 294643 =55 (0.950)4 (0.070) 4/326 NT 7.2% coding (47/813 nt) ssuB Aliphatic sulfonates import ATP‑binding protein SsuB
?AE015451 294683 = 50 (0.910)coding (87/813 nt) ssuB Aliphatic sulfonates import ATP‑binding protein SsuB
* ? AE015451 = 29990567 (1.160)4 (0.070) 4/332 NT 5.9% coding (1221/2586 nt) yhgF putative transcriptional accessory protein
?AE015451 = 299912 62 (1.110)coding (1214/2586 nt) yhgF putative transcriptional accessory protein
* ? AE015451 300399 =50 (0.870)4 (0.070) 4/326 NT 7.5% coding (727/2586 nt) yhgF putative transcriptional accessory protein
?AE015451 300509 = 51 (0.930)coding (617/2586 nt) yhgF putative transcriptional accessory protein
* ? AE015451 331563 =56 (0.970)3 (0.050) 3/324 NT 5.5% coding (1453/2298 nt) PP_0272 Outer membrane ferric siderophore receptor
?AE015451 331586 = 50 (0.920)coding (1476/2298 nt) PP_0272 Outer membrane ferric siderophore receptor
* ? AE015451 400798 =43 (0.750)4 (0.070) 4/326 NT 8.7% coding (384/1059 nt) PP_0334 transposase
?AE015451 400827 = 43 (0.780)coding (413/1059 nt) PP_0334 transposase
* ? AE015451 = 40766234 (0.590)5 (0.090) 4/336 NT 12.6% coding (343/1641 nt) aceF AceF‑S‑acetyldihydrolipoate
?AE015451 = 407678 36 (0.640)coding (327/1641 nt) aceF AceF‑S‑acetyldihydrolipoate
* ? AE015451 449057 =51 (0.880)4 (0.070) 4/326 NT 7.5% coding (228/1779 nt) PP_0370 Acyl‑CoA dehydrogenase family protein
?AE015451 449107 = 50 (0.910)coding (278/1779 nt) PP_0370 Acyl‑CoA dehydrogenase family protein
* ? AE015451 = 48781136 (0.620)3 (0.050) 3/330 NT 8.0% coding (491/990 nt) pdxA 4‑hydroxythreonine‑4‑phosphate dehydrogenase
?AE015451 = 487820 34 (0.610)coding (482/990 nt) pdxA 4‑hydroxythreonine‑4‑phosphate dehydrogenase
* ? AE015451 503644 =47 (0.820)4 (0.070) 4/324 NT 9.8% coding (675/828 nt) PP_0414 Polyamine ABC transporter, permease protein
?AE015451 503701 = 29 (0.530)coding (732/828 nt) PP_0414 Polyamine ABC transporter, permease protein
* ? AE015451 608871 =78 (1.350)4 (0.070) 4/328 NT 5.3% coding (742/813 nt) PP_0524 putative Periplasmic cobalamin‑binding protein HutB
?AE015451 608902 = 68 (1.230)coding (773/813 nt) PP_0524 putative Periplasmic cobalamin‑binding protein HutB
* ? AE015451 611504 =NA (NA)7 (0.130) 7/328 NT NA coding (401/966 nt) PP_0526 transposase
?AE015451 611533 = NA (NA)coding (430/966 nt) PP_0526 transposase
* ? AE015451 = 611935NA (NA)5 (0.090) 5/324 NT NA coding (832/966 nt) PP_0526 transposase
?AE015451 = 611960 NA (NA)coding (857/966 nt) PP_0526 transposase
* ? AE015451 = 64218049 (0.850)4 (0.070) 4/334 NT 8.3% coding (807/1107 nt) acoC Dihydrolipoyllysine‑residue acetyltransferase component of acetoin cleaving system
?AE015451 = 642299 41 (0.730)coding (688/1107 nt) acoC Dihydrolipoyllysine‑residue acetyltransferase component of acetoin cleaving system
* ? AE015451 665413 =64 (1.110)4 (0.070) 4/328 NT 6.1% coding (2279/4902 nt) yfhM lipoprotein of unknown function
?AE015451 665429 = 62 (1.120)coding (2295/4902 nt) yfhM lipoprotein of unknown function
* ? AE015451 665680 =60 (1.040)3 (0.060) 3/322 NT 5.1% coding (2546/4902 nt) yfhM lipoprotein of unknown function
?AE015451 665839 = 55 (1.010)coding (2705/4902 nt) yfhM lipoprotein of unknown function
* ? AE015451 676190 =56 (0.970)3 (0.050) 3/328 NT 5.4% coding (221/750 nt) PP_0578 putative Methyltransferase
?AE015451 676267 = 51 (0.920)coding (144/750 nt) PP_0578 putative Methyltransferase
* ? AE015451 689649 =59 (1.020)3 (0.050) 3/324 NT 5.1% coding (695/714 nt) PP_0590 Transcriptional regulator, ArsR family
?AE015451 689680 = 56 (1.030)intergenic (+12/+9) PP_0590/PP_0591 Transcriptional regulator, ArsR family/Adenine deaminase
* ? AE015451 = 72981340 (0.690)3 (0.050) 3/338 NT 6.7% coding (343/741 nt) yfiH Uncharacterized protein YfiH
?AE015451 = 729829 44 (0.770)coding (359/741 nt) yfiH Uncharacterized protein YfiH
* ? AE015451 734319 =27 (0.470)7 (0.130) 6/320 NT 22.1% coding (998/1296 nt) ndh NADH dehydrogenase
?AE015451 734381 = 24 (0.440)coding (936/1296 nt) ndh NADH dehydrogenase
* ? AE015451 = 74052736 (0.620)5 (0.090) 4/324 NT 12.6% coding (100/1209 nt) pilC Type 4 fimbrial assembly protein PilC
?AE015451 = 740537 35 (0.640)coding (90/1209 nt) pilC Type 4 fimbrial assembly protein PilC
* ? AE015451 741491 =NA (NA)7 (0.130) 5/328 NT NA intergenic (+91/‑409) PP_t12/PP_0635 tRNA‑Thr/Group II intron‑encoding maturase
?AE015451 741509 = NA (NA)intergenic (+109/‑391) PP_t12/PP_0635 tRNA‑Thr/Group II intron‑encoding maturase
* ? AE015451 811732 =59 (1.020)5 (0.090) 5/322 NT 8.3% coding (520/918 nt) PP_0698 Transcriptional regulator, LysR family
?AE015451 811872 = 55 (1.010)coding (380/918 nt) PP_0698 Transcriptional regulator, LysR family
* ? AE015451 818587 =64 (1.110)5 (0.090) 5/330 NT 7.5% coding (89/516 nt) PP_0704 RNA polymerase sigma‑70 factor, ECF subfamily
?AE015451 818605 = 61 (1.100)coding (71/516 nt) PP_0704 RNA polymerase sigma‑70 factor, ECF subfamily
* ? AE015451 872677 =57 (0.990)3 (0.050) 3/326 NT 5.9% coding (485/1272 nt) PP_0756 conserved protein of unknown function
?AE015451 872768 = 42 (0.760)coding (394/1272 nt) PP_0756 conserved protein of unknown function
* ? AE015451 = 87368061 (1.060)6 (0.110) 5/324 NT 10.6% coding (38/621 nt) PP_0758 conserved protein of unknown function
?AE015451 = 873734 43 (0.790)coding (92/621 nt) PP_0758 conserved protein of unknown function
* ? AE015451 = 93879452 (0.900)3 (0.050) 3/332 NT 6.2% coding (6828/18933 nt) PP_0806 putative Surface adhesion protein
?AE015451 = 939185 41 (0.730)coding (6437/18933 nt) PP_0806 putative Surface adhesion protein
* ? AE015451 1015817 =47 (0.820)4 (0.070) 4/324 NT 8.1% coding (424/1431 nt) PP_0875 conserved protein of unknown function
?AE015451 1015933 = 46 (0.840)coding (308/1431 nt) PP_0875 conserved protein of unknown function
* ? AE015451 1030530 =59 (1.020)4 (0.070) 4/322 NT 6.5% coding (588/1353 nt) PP_0887 Sensor histidine kinase
?AE015451 1030592 = 60 (1.110)coding (650/1353 nt) PP_0887 Sensor histidine kinase
* ? AE015451 = 105949769 (1.200)5 (0.100) 5/306 NT 7.6% coding (272/615 nt) PP_0916 Amino acid transporter LysE
?AE015451 = 1059479 59 (1.140)coding (290/615 nt) PP_0916 Amino acid transporter LysE
* ? AE015451 1194168 =53 (0.920)3 (0.060) 3/318 NT 5.8% coding (307/1653 nt) uxpA Lipoprotein UxpA
?AE015451 1194180 = 49 (0.910)coding (319/1653 nt) uxpA Lipoprotein UxpA
* ? AE015451 = 122885965 (1.130)4 (0.070) 4/324 NT 5.6% coding (2039/4320 nt) PP_1072 Leucine‑rich repeat domain protein
?AE015451 = 1228894 73 (1.340)coding (2074/4320 nt) PP_1072 Leucine‑rich repeat domain protein
* ? AE015451 1246664 =52 (0.900)3 (0.060) 3/302 NT 6.6% intergenic (+65/‑306) PP_1087/argG Outer membrane protein, OmpA family/Argininosuccinate synthase
?AE015451 1246730 = 39 (0.770)intergenic (+131/‑240) PP_1087/argG Outer membrane protein, OmpA family/Argininosuccinate synthase
* ? AE015451 = 1296790NA (NA)4 (0.070) 4/328 NT NA intergenic (‑543/‑23) nhaA‑I/PP_1133 Na(+)/H(+) antiporter NhaA 1/transposase
?AE015451 = 1296814 NA (NA)coding (2/1329 nt) PP_1133 transposase
* ? AE015451 1298086 =NA (NA)5 (0.090) 5/318 NT NA coding (1274/1329 nt) PP_1133 transposase
?AE015451 1298113 = NA (NA)coding (1301/1329 nt) PP_1133 transposase
* ? AE015451 = 151027250 (0.870)3 (0.050) 3/332 NT 5.7% coding (1295/1818 nt) PP_1325 putative lipoprotein
?AE015451 = 1510301 50 (0.890)coding (1266/1818 nt) PP_1325 putative lipoprotein
* ? AE015451 = 151633681 (1.410)5 (0.090) 4/322 NT 6.7% coding (1271/1749 nt) ftsI peptidoglycan DD transpeptidase
?AE015451 = 1516459 64 (1.180)coding (1394/1749 nt) ftsI peptidoglycan DD transpeptidase
* ? AE015451 1569240 =55 (0.950)3 (0.050) 3/328 NT 5.5% coding (51/1203 nt) pcaF‑I beta‑ketoadipyl‑CoA thiolase
?AE015451 1569284 = 51 (0.920)coding (95/1203 nt) pcaF‑I beta‑ketoadipyl‑CoA thiolase
* ? AE015451 = 159598832 (0.560)4 (0.070) 4/324 NT 10.5% coding (1023/1335 nt) dctD‑III C4‑dicarboxylate transport transcriptional regulatory protein
?AE015451 = 1596052 38 (0.700)coding (959/1335 nt) dctD‑III C4‑dicarboxylate transport transcriptional regulatory protein
* ? AE015451 1656686 =43 (0.750)4 (0.070) 4/324 NT 8.9% coding (83/4527 nt) PP_1449 conserved exported protein of unknown function
?AE015451 1656725 = 41 (0.750)coding (44/4527 nt) PP_1449 conserved exported protein of unknown function
* ? AE015451 = 171447541 (0.710)3 (0.060) 3/322 NT 6.9% coding (319/870 nt) PP_1509 conserved protein of unknown function
?AE015451 = 1714500 42 (0.770)coding (344/870 nt) PP_1509 conserved protein of unknown function
* ? AE015451 1737987 =66 (1.140)23 (0.440) 19/308 NT 30.0% coding (32/348 nt) yffB putative glutathione‑dependent thiol reductase
?AE015451 = 1777401 48 (0.920)intergenic (+135/+157) PP_5476/PP_1585 conserved protein of unknown function/putative Antidote protein
* ? AE015451 = 184234537 (0.640)3 (0.060) 3/318 NT 7.7% coding (2449/2754 nt) gacS Sensor protein GacS
?AE015451 = 1842393 38 (0.710)coding (2401/2754 nt) gacS Sensor protein GacS
* ? AE015451 = 188625954 (0.940)5 (0.100) 5/310 NT 9.2% coding (926/1488 nt) rmuC DNA recombination limiting inversions protein
?AE015451 = 1886243 50 (0.960)coding (910/1488 nt) rmuC DNA recombination limiting inversions protein
* ? AE015451 1924902 =61 (1.060)3 (0.050) 3/326 NT 5.5% coding (800/837 nt) PP_1725 conserved protein of unknown function
?AE015451 1924933 = 45 (0.820)coding (769/837 nt) PP_1725 conserved protein of unknown function
* ? AE015451 = 194711159 (1.020)4 (0.070) 4/324 NT 6.6% coding (629/1185 nt) PP_1748 conserved protein of unknown function
?AE015451 = 1947134 57 (1.040)coding (606/1185 nt) PP_1748 conserved protein of unknown function
* ? AE015451 = 196220045 (0.780)5 (0.090) 3/324 NT 10.1% coding (463/1833 nt) PP_1760 ABC transporter, ATP‑binding protein
?AE015451 = 1962206 46 (0.840)coding (469/1833 nt) PP_1760 ABC transporter, ATP‑binding protein
* ? AE015451 2057883 =65 (1.130)5 (0.090) 5/316 NT 7.7% intergenic (+99/+29) PP_1832/PP_1833 putative Oxidase/conserved protein of unknown function
?AE015451 2057988 = 59 (1.110)coding (227/303 nt) PP_1833 conserved protein of unknown function
* ? AE015451 2064117 =47 (0.820)3 (0.060) 3/310 NT 6.8% intergenic (+21/+80) PP_1840/PP_1841 conserved protein of unknown function/Cytochrome c family protein
?AE015451 2064133 = 40 (0.770)intergenic (+37/+64) PP_1840/PP_1841 conserved protein of unknown function/Cytochrome c family protein
* ? AE015451 = 2086080NA (NA)9 (0.160) 9/328 NT NA coding (195/1302 nt) PP_1865 transposase
?AE015451 = 2086138 NA (NA)coding (253/1302 nt) PP_1865 transposase
* ? AE015451 2087730 =26 (0.450)4 (0.070) 4/328 NT 9.9% intergenic (+543/+375) PP_1865/aroH transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase
?AE015451 2256224 = 48 (0.870)intergenic (+284/‑420) asd/PP_1990 Aspartate‑semialdehyde dehydrogenase/transposase
* ? AE015451 2101747 =56 (0.970)3 (0.060) 3/306 NT 5.7% coding (561/768 nt) PP_1878 conserved protein of unknown function
?AE015451 2101765 = 50 (0.970)coding (543/768 nt) PP_1878 conserved protein of unknown function
* ? AE015451 = 213040564 (1.110)4 (0.080) 4/310 NT 6.6% coding (1794/2496 nt) fimD Type 1 pili subunit FimD
?AE015451 = 2130389 56 (1.070)coding (1810/2496 nt) fimD Type 1 pili subunit FimD
* ? AE015451 = 225620956 (0.970)4 (0.070) 3/322 NT 9.1% intergenic (+269/‑435) asd/PP_1990 Aspartate‑semialdehyde dehydrogenase/transposase
?AE015451 = 4022295 27 (0.500)coding (11/942 nt) PP_3547 putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain
* ? AE015451 2262655 =50 (0.870)3 (0.050) 3/330 NT 5.9% coding (370/861 nt) truA tRNA pseudouridine (38‑40)synthase
?AE015451 2262708 = 48 (0.860)coding (423/861 nt) truA tRNA pseudouridine (38‑40)synthase
* ? AE015451 2274562 =28 (0.490)4 (0.070) 4/332 NT 12.5% coding (928/1119 nt) PP_2005 conserved exported protein of unknown function
?AE015451 2274588 = 29 (0.520)coding (902/1119 nt) PP_2005 conserved exported protein of unknown function
* ? AE015451 = 228331139 (0.680)3 (0.050) 3/324 NT 8.1% coding (504/978 nt) PP_2011 conserved exported protein of unknown function
?AE015451 = 2283449 31 (0.570)coding (366/978 nt) PP_2011 conserved exported protein of unknown function
* ? AE015451 2310856 =56 (0.970)3 (0.050) 3/324 NT 5.4% coding (607/1311 nt) PP_2033 conserved protein of unknown function
?AE015451 2311137 = 52 (0.950)coding (888/1311 nt) PP_2033 conserved protein of unknown function
* ? AE015451 2315333 =58 (1.010)3 (0.050) 3/332 NT 5.2% coding (619/783 nt) PP_2037 putative Aldolase
?AE015451 2315365 = 52 (0.930)coding (587/783 nt) PP_2037 putative Aldolase
* ? AE015451 2320513 =50 (0.870)3 (0.050) 3/326 NT 6.0% coding (728/945 nt) PP_2041 Transcriptional regulator, LysR family
?AE015451 2320540 = 47 (0.860)coding (701/945 nt) PP_2041 Transcriptional regulator, LysR family
* ? AE015451 2343559 =37 (0.640)3 (0.060) 3/320 NT 6.8% coding (145/249 nt) PP_2059 UPF0337 protein PP_2059
?AE015451 2343648 = 47 (0.870)coding (56/249 nt) PP_2059 UPF0337 protein PP_2059
* ? AE015451 = 235779348 (0.830)4 (0.070) 3/328 NT 8.3% coding (518/825 nt) PP_2072 Transcriptional regulator, AraC family
?AE015451 = 2357821 42 (0.760)coding (490/825 nt) PP_2072 Transcriptional regulator, AraC family
* ? AE015451 = 235793953 (0.920)3 (0.050) 3/324 NT 5.1% coding (372/825 nt) PP_2072 Transcriptional regulator, AraC family
?AE015451 = 2357967 61 (1.120)coding (344/825 nt) PP_2072 Transcriptional regulator, AraC family
* ? AE015451 = 236345642 (0.730)3 (0.050) 3/332 NT 6.9% coding (421/2724 nt) PP_2076 conserved protein of unknown function
?AE015451 = 2363464 40 (0.710)coding (413/2724 nt) PP_2076 conserved protein of unknown function
* ? AE015451 2382955 =40 (0.690)4 (0.070) 4/326 NT 9.3% coding (942/1671 nt) PP_2091 putative Serine/threonine‑protein kinase
?AE015451 2382997 = 40 (0.730)coding (900/1671 nt) PP_2091 putative Serine/threonine‑protein kinase
* ? AE015451 = 238810327 (0.470)3 (0.050) 3/326 NT 10.2% coding (863/1023 nt) pyrD Dihydroorotate dehydrogenase (quinone)
?AE015451 = 2388114 27 (0.490)coding (874/1023 nt) pyrD Dihydroorotate dehydrogenase (quinone)
* ? AE015451 = 240534744 (0.760)3 (0.050) 3/324 NT 6.6% coding (344/432 nt) PP_2108 conserved protein of unknown function
?AE015451 = 2405351 43 (0.790)coding (348/432 nt) PP_2108 conserved protein of unknown function
* ? AE015451 2436352 =0 (0.000)10 (0.190) 5/320 NT 87.0% coding (896/966 nt) PP_2134 transposase
?AE015451 = 6038060 3 (0.060)coding (921/966 nt) PP_5290 transposase
* ? AE015451 2456238 =60 (1.040)3 (0.050) 3/324 NT 5.4% coding (953/1464 nt) gapB glyceraldehyde‑3‑phosphate dehydrogenase
?AE015451 2456321 = 49 (0.900)coding (1036/1464 nt) gapB glyceraldehyde‑3‑phosphate dehydrogenase
* ? AE015451 = 245964943 (0.750)4 (0.070) 4/328 NT 8.6% coding (644/717 nt) ugpQ glycerophosphoryl diester phosphodiesterase
?AE015451 = 2459657 44 (0.800)coding (636/717 nt) ugpQ glycerophosphoryl diester phosphodiesterase
* ? AE015451 2460050 =47 (0.820)3 (0.050) 3/328 NT 6.5% coding (243/717 nt) ugpQ glycerophosphoryl diester phosphodiesterase
?AE015451 2460124 = 41 (0.740)coding (169/717 nt) ugpQ glycerophosphoryl diester phosphodiesterase
* ? AE015451 = 247211546 (0.800)10 (0.180) 8/328 NT 19.2% intergenic (+19/+130) PP_2166/PP_2167 Anti‑anti‑sigma factor/putative PhoD‑like phosphatase
?AE015451 2472313 = 40 (0.720)coding (1783/1851 nt) PP_2167 putative PhoD‑like phosphatase
* ? AE015451 = 247576357 (0.990)3 (0.050) 3/328 NT 5.1% coding (606/1011 nt) dusA tRNA‑dihydrouridine synthase A
?AE015451 = 2475772 56 (1.010)coding (597/1011 nt) dusA tRNA‑dihydrouridine synthase A
* ? AE015451 = 248767141 (0.710)3 (0.060) 3/322 NT 6.6% coding (43/516 nt) PP_2182 conserved protein of unknown function
?AE015451 = 2487726 46 (0.850)coding (98/516 nt) PP_2182 conserved protein of unknown function
* ? AE015451 = 250892236 (0.620)3 (0.060) 3/310 NT 8.6% coding (193/429 nt) PP_2203 conserved protein of unknown function
?AE015451 = 2508906 31 (0.590)coding (209/429 nt) PP_2203 conserved protein of unknown function
* ? AE015451 2526824 =55 (0.950)3 (0.060) 3/322 NT 5.8% coding (1068/1194 nt) PP_2215 acetyl‑CoA acetyltransferase
?AE015451 2526872 = 45 (0.830)coding (1116/1194 nt) PP_2215 acetyl‑CoA acetyltransferase
* ? AE015451 2566600 =55 (0.950)4 (0.070) 4/320 NT 7.3% coding (352/1932 nt) pctB Methyl‑accepting chemotaxis protein PctB
?AE015451 2566704 = 50 (0.930)coding (248/1932 nt) pctB Methyl‑accepting chemotaxis protein PctB
* ? AE015451 = 261644266 (1.140)4 (0.070) 3/326 NT 6.0% coding (609/1641 nt) PP_2288 Phage tail fiber protein
?AE015451 = 2616471 62 (1.130)coding (638/1641 nt) PP_2288 Phage tail fiber protein
* ? AE015451 2641297 =48 (0.830)3 (0.060) 3/306 NT 6.8% coding (284/798 nt) tatD Mg‑dependent cytoplasmic DNase / RNase
?AE015451 2641315 = 39 (0.760)coding (266/798 nt) tatD Mg‑dependent cytoplasmic DNase / RNase
* ? AE015451 = 266197253 (0.920)4 (0.070) 4/324 NT 7.2% coding (76/891 nt) mmgF 2‑methylisocitrate lyase
?AE015451 = 2661979 53 (0.970)coding (83/891 nt) mmgF 2‑methylisocitrate lyase
* ? AE015451 = 275299541 (0.710)4 (0.070) 4/328 NT 9.1% coding (552/1215 nt) czcB‑II cobalt‑zinc‑cadmium resistance protein
?AE015451 = 2753007 41 (0.740)coding (564/1215 nt) czcB‑II cobalt‑zinc‑cadmium resistance protein
* ? AE015451 2774802 =45 (0.780)4 (0.070) 4/326 NT 8.9% coding (710/1353 nt) PP_5521 protein of unknown function
?AE015451 2774821 = 39 (0.710)coding (691/1353 nt) PP_5521 protein of unknown function
* ? AE015451 = 279228741 (0.710)3 (0.050) 3/326 NT 6.4% coding (252/894 nt) PP_2444 Transcriptional regulator, LysR family
?AE015451 = 2792374 48 (0.870)coding (165/894 nt) PP_2444 Transcriptional regulator, LysR family
* ? AE015451 = 297675860 (1.040)3 (0.050) 3/324 NT 5.0% coding (694/816 nt) PP_2603 conserved protein of unknown function
?AE015451 = 2976807 57 (1.040)coding (743/816 nt) PP_2603 conserved protein of unknown function
* ? AE015451 = 301206858 (1.010)3 (0.050) 3/328 NT 5.0% coding (1129/1614 nt) bcsG putative endoglucanase
?AE015451 = 3012069 58 (1.050)coding (1130/1614 nt) bcsG putative endoglucanase
* ? AE015451 3021021 =54 (0.940)5 (0.090) 5/324 NT 8.8% coding (1559/3519 nt) PP_2638 putative Cellulose synthase operon C protein
?AE015451 3021040 = 52 (0.950)coding (1578/3519 nt) PP_2638 putative Cellulose synthase operon C protein
* ? AE015451 3025474 =54 (0.940)4 (0.070) 4/326 NT 8.0% coding (1162/1800 nt) PP_2641 Iron‑sulfur cluster‑binding protein
?AE015451 3025501 = 41 (0.750)coding (1135/1800 nt) PP_2641 Iron‑sulfur cluster‑binding protein
* ? AE015451 = 308259257 (0.990)3 (0.050) 3/326 NT 5.2% coding (1476/1551 nt) PP_2692 putative Transporter, BCCT family
?AE015451 = 3082723 54 (0.980)coding (1345/1551 nt) PP_2692 putative Transporter, BCCT family
* ? AE015451 3121594 =44 (0.760)3 (0.050) 3/334 NT 6.7% coding (269/423 nt) PP_2738 putative Transcriptional regulator
?AE015451 3121649 = 41 (0.730)coding (214/423 nt) PP_2738 putative Transcriptional regulator
* ? AE015451 = 312645054 (0.940)3 (0.050) 3/328 NT 5.5% intergenic (‑181/+15) PP_2743/PP_2744 Acetyltransferase, GNAT family/Ribose‑phosphate pyrophosphokinase family protein
?AE015451 = 3126455 52 (0.940)intergenic (‑186/+10) PP_2743/PP_2744 Acetyltransferase, GNAT family/Ribose‑phosphate pyrophosphokinase family protein
* ? AE015451 3140058 =48 (0.830)6 (0.110) 5/326 NT 13.4% coding (612/1245 nt) sfnB sulfur acquisition oxidoreductase, SfnB family
?AE015451 3140103 = 32 (0.580)coding (657/1245 nt) sfnB sulfur acquisition oxidoreductase, SfnB family
* ? AE015451 3155135 =42 (0.730)4 (0.070) 4/330 NT 9.4% intergenic (+13/+24) PP_2770/PP_2771 conserved exported protein of unknown function/Sigma‑54 dependent transcriptional regulator
?AE015451 3155157 = 37 (0.670)intergenic (+35/+2) PP_2770/PP_2771 conserved exported protein of unknown function/Sigma‑54 dependent transcriptional regulator
* ? AE015451 3158934 =42 (0.730)5 (0.090) 5/326 NT 11.0% coding (953/2097 nt) opuA glycine betaine ABC transporter, ATPase/permease fusion protein
?AE015451 3158952 = 41 (0.750)coding (971/2097 nt) opuA glycine betaine ABC transporter, ATPase/permease fusion protein
* ? AE015451 = 328972631 (0.540)3 (0.050) 3/328 NT 8.7% coding (758/1752 nt) PP_2892 conserved exported protein of unknown function
?AE015451 = 3289733 33 (0.600)coding (765/1752 nt) PP_2892 conserved exported protein of unknown function
* ? AE015451 3296619 =41 (0.710)4 (0.070) 4/328 NT 9.2% coding (256/492 nt) PP_2898 conserved exported protein of unknown function
?AE015451 3296638 = 40 (0.720)coding (237/492 nt) PP_2898 conserved exported protein of unknown function
* ? AE015451 = 332528355 (0.950)3 (0.050) 3/326 NT 5.5% coding (36/1620 nt) mqo‑III malate:quinone oxidoreductase
?AE015451 = 3325294 50 (0.910)coding (47/1620 nt) mqo‑III malate:quinone oxidoreductase
* ? AE015451 3409928 =57 (0.990)6 (0.110) 5/332 NT 9.3% intergenic (‑494/‑42) PP_3022/PP_3024 Transcriptional regulator, AraC family/conserved protein of unknown function
?AE015451 = 3450711 62 (1.110)intergenic (‑125/+258) PP_5558/PP_3069 putative transcriptional xre family of phage origin/Outer membrane autotransporter
* ? AE015451 = 349060359 (1.020)4 (0.070) 4/324 NT 6.4% coding (788/2637 nt) clpV Protein ClpV1
?AE015451 = 3490689 62 (1.140)coding (702/2637 nt) clpV Protein ClpV1
* ? AE015451 = 366151853 (0.920)3 (0.060) 3/314 NT 6.1% coding (177/945 nt) PP_3225 D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
?AE015451 = 3661504 43 (0.810)coding (191/945 nt) PP_3225 D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
* ? AE015451 = 377961448 (0.830)4 (0.070) 4/334 NT 7.6% coding (65/1575 nt) nikA nickel ABC transporter periplasmic binding protein
?AE015451 = 3779631 51 (0.910)coding (82/1575 nt) nikA nickel ABC transporter periplasmic binding protein
* ? AE015451 = 378271450 (0.870)3 (0.050) 3/326 NT 6.5% coding (651/846 nt) nikC nickel ABC transporter permease subunit
?AE015451 = 3782954 38 (0.690)coding (45/771 nt) nikD nickel ABC transporter ATP‑binding subunit
* ? AE015451 3794442 =40 (0.690)5 (0.090) 5/326 NT 11.0% coding (81/1191 nt) PP_3355 Beta‑ketothiolase
?AE015451 3794568 = 43 (0.780)intergenic (‑46/+2) PP_3355/fcs Beta‑ketothiolase/feruloyl‑CoA‑synthetase
* ? AE015451 3796487 =44 (0.760)3 (0.050) 3/324 NT 6.7% intergenic (‑34/+58) fcs/vdh feruloyl‑CoA‑synthetase/vanillin dehydrogenase
?AE015451 3796514 = 42 (0.770)intergenic (‑61/+31) fcs/vdh feruloyl‑CoA‑synthetase/vanillin dehydrogenase
* ? AE015451 = 383791660 (1.040)4 (0.070) 4/328 NT 6.5% coding (1511/2673 nt) PP_3388 conserved protein of unknown function
?AE015451 = 3837926 58 (1.050)coding (1521/2673 nt) PP_3388 conserved protein of unknown function
* ? AE015451 3914680 =49 (0.850)3 (0.050) 3/324 NT 6.3% coding (107/702 nt) PP_3454 putative transcriptional regulatory protein
?AE015451 3914699 = 43 (0.790)coding (88/702 nt) PP_3454 putative transcriptional regulatory protein
* ? AE015451 3933799 =55 (0.950)3 (0.050) 3/326 NT 5.8% coding (1614/1911 nt) PP_3467 Sigma‑54 dependent transcriptional regulator
?AE015451 3933920 = 45 (0.820)coding (1493/1911 nt) PP_3467 Sigma‑54 dependent transcriptional regulator
* ? AE015451 3941236 =36 (0.620)4 (0.070) 4/324 NT 10.4% coding (322/387 nt) PP_3476 Type II secretion system protein G
?AE015451 3941263 = 35 (0.640)coding (295/387 nt) PP_3476 Type II secretion system protein G
* ? AE015451 = 395109735 (0.610)10 (0.170) 6/340 NT 23.0% intergenic (‑61/+134) PP_3486/PP_3487 putative cytochrome c/conserved exported protein of unknown function
?AE015451 = 3951157 32 (0.560)intergenic (‑121/+74) PP_3486/PP_3487 putative cytochrome c/conserved exported protein of unknown function
* ? AE015451 = 395414639 (0.680)3 (0.050) 3/326 NT 7.8% coding (377/1977 nt) PP_5606 conserved exported protein of unknown function with YVTN beta‑propeller repeat
?AE015451 = 3954204 34 (0.620)coding (319/1977 nt) PP_5606 conserved exported protein of unknown function with YVTN beta‑propeller repeat
* ? AE015451 3970595 =NA (NA)7 (0.130) 7/310 NT NA coding (514/1536 nt) PP_3501 transposase
?AE015451 3970611 = NA (NA)coding (530/1536 nt) PP_3501 transposase
* ? AE015451 = 3970610NA (NA)5 (0.100) 5/310 NT NA coding (529/1536 nt) PP_3501 transposase
?AE015451 = 3970594 NA (NA)coding (513/1536 nt) PP_3501 transposase
* ? AE015451 = 3971345NA (NA)6 (0.110) 6/326 NT NA coding (1264/1536 nt) PP_3501 transposase
?AE015451 = 3971349 NA (NA)coding (1268/1536 nt) PP_3501 transposase
* ? AE015451 = 398451548 (0.830)3 (0.050) 3/326 NT 5.7% coding (122/441 nt) PP_3512 conserved membrane protein of unknown function
?AE015451 = 3984581 54 (0.980)coding (56/441 nt) PP_3512 conserved membrane protein of unknown function
* ? AE015451 = 402230530 (0.520)17 (0.310) 13/322 NT 33.3% coding (1/942 nt) PP_3547 putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain
?AE015451 4022806 = 40 (0.740)intergenic (‑501/+167) PP_3547/emrB putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit
* ? AE015451 = 402244532 (0.560)7 (0.130) 7/322 NT 20.9% intergenic (‑140/+528) PP_3547/emrB putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit
?AE015451 4022664 = 23 (0.420)intergenic (‑359/+309) PP_3547/emrB putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit
* ? AE015451 = 405347549 (0.850)3 (0.050) 3/326 NT 5.9% coding (49/1320 nt) PP_3573 putative Monooxygenase
?AE015451 = 4053476 49 (0.890)coding (50/1320 nt) PP_3573 putative Monooxygenase
* ? AE015451 = 412370049 (0.850)3 (0.050) 3/326 NT 5.4% coding (175/1746 nt) PP_3628 Choline/carnitine/betaine transporter family protein
?AE015451 = 4123796 58 (1.060)coding (271/1746 nt) PP_3628 Choline/carnitine/betaine transporter family protein
* ? AE015451 4123926 =44 (0.760)4 (0.070) 4/320 NT 8.8% coding (401/1746 nt) PP_3628 Choline/carnitine/betaine transporter family protein
?AE015451 4123974 = 42 (0.780)coding (449/1746 nt) PP_3628 Choline/carnitine/betaine transporter family protein
* ? AE015451 4133059 =40 (0.690)4 (0.070) 4/326 NT 9.4% coding (102/1206 nt) PP_3636 putative Sulfonate ABC transporter, periplasmic sulfonate‑binding protein
?AE015451 4133114 = 39 (0.710)coding (47/1206 nt) PP_3636 putative Sulfonate ABC transporter, periplasmic sulfonate‑binding protein
* ? AE015451 = 413858253 (0.920)3 (0.050) 3/328 NT 5.4% coding (81/486 nt) PP_3643 putative Oxidoreductase
?AE015451 = 4138588 55 (0.990)coding (87/486 nt) PP_3643 putative Oxidoreductase
* ? AE015451 = 416043841 (0.710)3 (0.050) 3/326 NT 6.7% coding (1178/1374 nt) PP_3662 conserved protein of unknown function
?AE015451 = 4160588 44 (0.800)coding (1328/1374 nt) PP_3662 conserved protein of unknown function
* ? AE015451 = 419247882 (1.420)5 (0.100) 5/302 NT 6.5% intergenic (+84/‑565) PP_5613/PP_5614 protein of unknown function/protein of unknown function
?AE015451 = 4192458 72 (1.410)intergenic (+64/‑585) PP_5613/PP_5614 protein of unknown function/protein of unknown function
* ? AE015451 4244793 =45 (0.780)7 (0.130) 6/328 NT 13.7% coding (228/1191 nt) aruH Arginine‑‑pyruvate transaminase AruH
?AE015451 4244808 = 45 (0.810)coding (213/1191 nt) aruH Arginine‑‑pyruvate transaminase AruH
* ? AE015451 4261045 =57 (0.990)4 (0.070) 4/324 NT 6.7% coding (1717/2460 nt) PP_3734 putative ABC transporter, permease protein
?AE015451 4261097 = 58 (1.060)coding (1665/2460 nt) PP_3734 putative ABC transporter, permease protein
* ? AE015451 = 427988340 (0.690)4 (0.070) 3/324 NT 8.9% coding (1083/1434 nt) PP_3750 Transcriptional regulator, GntR family
?AE015451 = 4280008 44 (0.810)coding (1208/1434 nt) PP_3750 Transcriptional regulator, GntR family
* ? AE015451 = 429085343 (0.750)4 (0.070) 4/324 NT 8.9% coding (1734/3468 nt) PP_3761 Sensor histidine kinase/response regulator
?AE015451 = 4290920 41 (0.750)coding (1667/3468 nt) PP_3761 Sensor histidine kinase/response regulator
* ? AE015451 = 433222833 (0.570)4 (0.070) 3/324 NT 11.4% coding (32/864 nt) PP_3804 conserved exported protein of unknown function
?AE015451 = 4332298 31 (0.570)coding (102/864 nt) PP_3804 conserved exported protein of unknown function
* ? AE015451 4353286 =41 (0.710)5 (0.090) 5/322 NT 12.4% coding (412/1086 nt) yrpB 2‑nitropropane dioxygenase
?AE015451 4353307 = 32 (0.590)coding (433/1086 nt) yrpB 2‑nitropropane dioxygenase
* ? AE015451 4371608 =59 (1.020)17 (0.480) 15/208 NT 30.9% intergenic (‑193/‑1379) PP_5636/PP_3849 protein of unknown function/putative calcium‑binding protein, hemolysin‑type
?AE015451 = 4427498 40 (1.140)intergenic (+82/+20) PP_3920/PP_t61 putative Phage integrase/tRNA‑Cys
* ? AE015451 4417589 =65 (1.130)5 (0.090) 5/314 NT 7.7% coding (482/552 nt) PP_3905 Transcriptional regulator, LuxR family
?AE015451 4417603 = 61 (1.150)coding (496/552 nt) PP_3905 Transcriptional regulator, LuxR family
* ? AE015451 = 444404554 (0.940)4 (0.070) 4/336 NT 7.5% intergenic (‑64/+145) nicT/nicF Putative metabolite transport protein NicT/maleamate amidohydrolase
?AE015451 = 4444068 46 (0.810)intergenic (‑87/+122) nicT/nicF Putative metabolite transport protein NicT/maleamate amidohydrolase
* ? AE015451 = 452669259 (1.020)4 (0.070) 4/332 NT 6.0% coding (502/627 nt) PP_4015 HflD‑like high frequency lysogenization protein
?AE015451 = 4526735 68 (1.220)coding (545/627 nt) PP_4015 HflD‑like high frequency lysogenization protein
* ? AE015451 4578272 =58 (1.010)3 (0.050) 3/328 NT 5.5% coding (1839/2211 nt) glgB 1,4‑alpha‑glucan branching enzyme
?AE015451 4578296 = 47 (0.850)coding (1815/2211 nt) glgB 1,4‑alpha‑glucan branching enzyme
* ? AE015451 = 459385929 (0.500)3 (0.060) 3/294 NT 9.5% intergenic (+165/+134) mccA/PP_4068 methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Transcriptional regulator, Cro/CI family
?AE015451 = 4593904 32 (0.650)intergenic (+210/+89) mccA/PP_4068 methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Transcriptional regulator, Cro/CI family
* ? AE015451 4604194 =51 (0.880)5 (0.090) 5/322 NT 10.1% coding (24/411 nt) PP_4076 conserved protein of unknown function
?AE015451 4604216 = 41 (0.760)coding (46/411 nt) PP_4076 conserved protein of unknown function
* ? AE015451 = 465367775 (1.300)4 (0.070) 3/322 NT 5.4% coding (155/1326 nt) aceA isocitrate lyase
?AE015451 = 4653754 70 (1.290)coding (232/1326 nt) aceA isocitrate lyase
* ? AE015451 = 466767041 (0.710)6 (0.110) 6/328 NT 13.1% coding (1436/1854 nt) nuoL NADH:ubiquinone oxidoreductase, membrane subunit L
?AE015451 = 4667687 40 (0.720)coding (1453/1854 nt) nuoL NADH:ubiquinone oxidoreductase, membrane subunit L
* ? AE015451 = 468179145 (0.780)5 (0.090) 4/324 NT 10.2% coding (81/1431 nt) mltD Membrane‑bound lytic murein transglycosylase D
?AE015451 = 4681800 45 (0.820)coding (90/1431 nt) mltD Membrane‑bound lytic murein transglycosylase D
* ? AE015451 = 470382946 (0.800)5 (0.090) 5/328 NT 10.6% coding (1335/1695 nt) kdpA potassium‑transporting ATPase A chain
?AE015451 = 4703830 40 (0.720)coding (1334/1695 nt) kdpA potassium‑transporting ATPase A chain
* ? AE015451 4743577 =75 (1.300)8 (0.150) 7/326 NT 10.1% coding (415/1593 nt) PP_4197 Transcriptional regulator, GntR family
?AE015451 4743666 = 71 (1.290)coding (326/1593 nt) PP_4197 Transcriptional regulator, GntR family
* ? AE015451 = 478190554 (0.940)5 (0.090) 5/324 NT 9.3% coding (5409/7887 nt) pvdJ non‑ribosomal peptide synthetase (subunit of ferribactin synthase)
?AE015451 = 4781937 46 (0.840)coding (5377/7887 nt) pvdJ non‑ribosomal peptide synthetase (subunit of ferribactin synthase)
* ? AE015451 = 479176440 (0.690)3 (0.060) 3/316 NT 7.6% coding (2076/6525 nt) pvdI non‑ribosomal peptide synthetase (subunit of ferribactin synthase)
?AE015451 = 4791873 36 (0.680)coding (1967/6525 nt) pvdI non‑ribosomal peptide synthetase (subunit of ferribactin synthase)
* ? AE015451 4808173 =0 (0.000)15 (0.260) 10/338 NT 39.5% intergenic (‑282/‑273) PP_4234/dsbD‑II Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2
?AE015451 = 4945372 46 (0.810)intergenic (+732/+66) PP_5673/flhB putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein
* ? AE015451 = 48081790 (0.000)15 (0.280) 11/318 NT 42.9% intergenic (‑288/‑267) PP_4234/dsbD‑II Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2
?AE015451 5988765 = 40 (0.750)intergenic (+59/‑487) kefB‑III/PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
* ? AE015451 = 480872826 (0.450)4 (0.080) 4/314 NT 14.6% coding (283/1716 nt) dsbD‑II thiol/disulfide interchange protein 2
?AE015451 = 4808714 23 (0.430)coding (269/1716 nt) dsbD‑II thiol/disulfide interchange protein 2
* ? AE015451 = 483274866 (1.140)4 (0.070) 4/330 NT 6.0% coding (443/1014 nt) pvdY hydroxyproline acetylase
?AE015451 = 4832762 62 (1.110)coding (429/1014 nt) pvdY hydroxyproline acetylase
* ? AE015451 4833372 =71 (1.230)5 (0.090) 5/324 NT 7.7% coding (683/801 nt) PP_4246 Periplasmic binding protein
?AE015451 4833436 = 52 (0.950)coding (619/801 nt) PP_4246 Periplasmic binding protein
* ? AE015451 4848146 =44 (0.760)3 (0.050) 3/328 NT 7.0% coding (235/684 nt) PP_4263 putative membrane‑bounded cytochrome biogenesis cycZ‑like domain, copper tolerance protein
?AE015451 4848162 = 38 (0.690)coding (251/684 nt) PP_4263 putative membrane‑bounded cytochrome biogenesis cycZ‑like domain, copper tolerance protein
* ? AE015451 = 488326656 (0.970)6 (0.110) 6/326 NT 9.8% intergenic (+68/‑286) PP_4291/PP_4293 conserved exported protein of unknown function/conserved exported protein of unknown function
?AE015451 = 4883277 57 (1.040)intergenic (+79/‑275) PP_4291/PP_4293 conserved exported protein of unknown function/conserved exported protein of unknown function
* ? AE015451 4884710 =58 (1.010)3 (0.050) 3/328 NT 5.8% coding (668/915 nt) yedI conserved inner membrane protein
?AE015451 4884763 = 42 (0.760)coding (615/915 nt) yedI conserved inner membrane protein
* ? AE015451 = 490286151 (0.880)6 (0.110) 4/320 NT 11.1% intergenic (+47/+72) PP_4310/PP_4311 putative Hydantoin racemase/putative D‑amino acid dehydrogenase 2 small subunit
?AE015451 = 4902896 48 (0.890)intergenic (+82/+37) PP_4310/PP_4311 putative Hydantoin racemase/putative D‑amino acid dehydrogenase 2 small subunit
* ? AE015451 = 494519747 (0.820)16 (0.290) 15/328 NT 25.0% intergenic (+557/+241) PP_5673/flhB putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein
?AE015451 4945389 = 51 (0.920)intergenic (+749/+49) PP_5673/flhB putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein
* ? AE015451 = 494519849 (0.850)4 (0.070) 4/332 NT 8.0% intergenic (+558/+240) PP_5673/flhB putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein
?AE015451 4945577 = 45 (0.800)coding (1004/1143 nt) flhB flagellin export apparatus, substrate specificity protein
* ? AE015451 = 494520948 (0.830)7 (0.130) 6/324 NT 13.1% intergenic (+569/+229) PP_5673/flhB putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein
?AE015451 4945455 = 47 (0.860)coding (1126/1143 nt) flhB flagellin export apparatus, substrate specificity protein
* ? AE015451 = 495374259 (1.020)3 (0.060) 3/320 NT 5.1% coding (690/1692 nt) PP_4363 Sensor histidine kinase/response regulator
?AE015451 = 4953780 57 (1.060)coding (652/1692 nt) PP_4363 Sensor histidine kinase/response regulator
* ? AE015451 = 496118145 (0.780)4 (0.070) 3/326 NT 8.7% coding (1257/1356 nt) atoC two component system AtoC DNA‑binding transcriptional activator
?AE015451 = 4961188 41 (0.750)coding (1250/1356 nt) atoC two component system AtoC DNA‑binding transcriptional activator
* ? AE015451 = 5036488NA (NA)3 (0.050) 3/328 NT NA coding (296/321 nt) PP_4441 transposase
?AE015451 = 5036555 NA (NA)coding (46/336 nt) PP_4442 transposase
* ? AE015451 5036643 =NA (NA)3 (0.050) 3/324 NT NA coding (134/336 nt) PP_4442 transposase
?AE015451 5036738 = NA (NA)coding (229/336 nt) PP_4442 transposase
* ? AE015451 5039357 =53 (0.920)5 (0.090) 5/328 NT 9.6% coding (658/759 nt) PP_4445 transposase
?AE015451 5039381 = 43 (0.780)coding (682/759 nt) PP_4445 transposase
* ? AE015451 = 510107142 (0.730)4 (0.070) 4/334 NT 8.9% coding (556/1560 nt) phhR sigma‑54 dependent transcriptional regulator
?AE015451 = 5101092 41 (0.730)coding (535/1560 nt) phhR sigma‑54 dependent transcriptional regulator
* ? AE015451 = 513841338 (0.660)3 (0.060) 3/322 NT 8.0% coding (600/963 nt) PP_4523 putative Agmatinase
?AE015451 = 5138512 33 (0.610)coding (699/963 nt) PP_4523 putative Agmatinase
* ? AE015451 5160627 =59 (1.020)3 (0.050) 3/330 NT 5.0% coding (428/1212 nt) PP_4543 conserved protein of unknown function
?AE015451 5160650 = 57 (1.020)coding (405/1212 nt) PP_4543 conserved protein of unknown function
* ? AE015451 5188554 =57 (0.990)3 (0.050) 3/324 NT 5.6% coding (343/882 nt) PP_4568 putative metabolite efflux pump
?AE015451 5188590 = 47 (0.860)coding (307/882 nt) PP_4568 putative metabolite efflux pump
* ? AE015451 = 526931158 (1.010)4 (0.080) 4/314 NT 6.9% coding (1028/1371 nt) radA DNA repair enzyme
?AE015451 = 5269297 55 (1.040)coding (1042/1371 nt) radA DNA repair enzyme
* ? AE015451 = 529772748 (0.830)3 (0.060) 3/322 NT 5.4% coding (199/567 nt) PP_4671 conserved exported protein of unknown function
?AE015451 = 5297808 59 (1.090)coding (118/567 nt) PP_4671 conserved exported protein of unknown function
* ? AE015451 = 532515362 (1.080)3 (0.060) 3/314 NT 5.0% coding (66/279 nt) PP_4685 conserved protein of unknown function
?AE015451 = 5325139 57 (1.080)coding (52/279 nt) PP_4685 conserved protein of unknown function
* ? AE015451 5336714 =42 (0.730)6 (0.110) 6/334 NT 12.6% coding (164/1443 nt) PP_4696 Nitrogen regulation protein NR(I)
?AE015451 5336732 = 42 (0.750)coding (182/1443 nt) PP_4696 Nitrogen regulation protein NR(I)
* ? AE015451 = 543421137 (0.640)3 (0.050) 3/330 NT 7.0% coding (1053/2529 nt) hrpB ATP‑dependent helicase HrpB
?AE015451 = 5434277 44 (0.790)coding (987/2529 nt) hrpB ATP‑dependent helicase HrpB
* ? AE015451 5452441 =57 (0.990)3 (0.050) 3/330 NT 5.2% coding (972/1518 nt) lnt Apolipoprotein N‑acyltransferase
?AE015451 5452490 = 55 (0.990)coding (1021/1518 nt) lnt Apolipoprotein N‑acyltransferase
* ? AE015451 = 545955910 (0.170)3 (0.050) 3/324 NT 25.6% intergenic (+17/‑23) PP_4795/holA putative Lipoprotein/DNA polymerase III, delta subunit
?AE015451 = 5459561 8 (0.150)intergenic (+19/‑21) PP_4795/holA putative Lipoprotein/DNA polymerase III, delta subunit
* ? AE015451 = 550291716 (0.280)4 (0.070) 4/322 NT 19.5% coding (365/432 nt) PP_4837 conserved protein of unknown function
?AE015451 = 5502938 18 (0.330)coding (386/432 nt) PP_4837 conserved protein of unknown function
* ? AE015451 = 550991046 (0.800)5 (0.100) 5/302 NT 10.8% coding (109/1488 nt) urtB putative Urea ABC transporter
?AE015451 = 5509890 42 (0.830)coding (89/1488 nt) urtB putative Urea ABC transporter
* ? AE015451 5545321 =NA (NA)62 (1.090) 52/338 NT 75.8% intergenic (‑461/+416) rpsF/rlmB 30S ribosomal protein S6/23S rRNA (guanosine‑2'‑O‑)‑methyltransferase RlmB
?AE015451 = 5621245 20 (0.350)coding (19/774 nt) PP_4939 conserved protein of unknown function
* ? AE015451 = 5545666NA (NA)34 (0.600) 29/336 NT 63.4% intergenic (‑806/+71) rpsF/rlmB 30S ribosomal protein S6/23S rRNA (guanosine‑2'‑O‑)‑methyltransferase RlmB
?AE015451 5621244 = 20 (0.350)coding (20/774 nt) PP_4939 conserved protein of unknown function
* ? AE015451 = 555958263 (1.090)5 (0.100) 5/302 NT 8.4% coding (915/1188 nt) hisZ ATP phosphoribosyltransferase regulatory subunit
?AE015451 = 5559562 54 (1.060)coding (935/1188 nt) hisZ ATP phosphoribosyltransferase regulatory subunit
* ? AE015451 = 556700652 (0.900)4 (0.070) 4/328 NT 7.9% coding (480/1899 nt) mutL DNA mismatch repair protein MutL
?AE015451 = 5567149 44 (0.800)coding (337/1899 nt) mutL DNA mismatch repair protein MutL
* ? AE015451 = 560984843 (0.750)4 (0.070) 4/328 NT 9.8% coding (667/906 nt) PP_4929 Transcriptional regulator, LysR family
?AE015451 = 5609893 32 (0.580)coding (622/906 nt) PP_4929 Transcriptional regulator, LysR family
* ? AE015451 5611082 =49 (0.850)3 (0.050) 3/328 NT 6.1% coding (76/1176 nt) PP_4931 conserved protein of unknown function
?AE015451 5611134 = 46 (0.830)coding (128/1176 nt) PP_4931 conserved protein of unknown function
* ? AE015451 5647932 =56 (0.970)3 (0.050) 3/326 NT 5.8% coding (192/453 nt) elaA putative acyltransferase
?AE015451 5648003 = 44 (0.800)coding (263/453 nt) elaA putative acyltransferase
* ? AE015451 = 565578556 (0.970)3 (0.050) 3/326 NT 5.5% coding (1910/1998 nt) tktA transketolase A
?AE015451 = 5655842 50 (0.910)coding (1853/1998 nt) tktA transketolase A
* ? AE015451 5728252 =55 (0.950)3 (0.050) 3/326 NT 5.7% coding (386/1680 nt) opgG Glucans biosynthesis protein G
?AE015451 5728289 = 47 (0.860)coding (349/1680 nt) opgG Glucans biosynthesis protein G
* ? AE015451 = 579088346 (0.800)4 (0.070) 4/326 NT 8.3% coding (835/1065 nt) hemE Uroporphyrinogen decarboxylase
?AE015451 = 5790885 44 (0.800)coding (833/1065 nt) hemE Uroporphyrinogen decarboxylase
* ? AE015451 = 580366054 (0.940)3 (0.050) 3/326 NT 5.7% coding (138/1017 nt) PP_5081 Type IV pili biogenesis protein
?AE015451 = 5803676 47 (0.860)coding (122/1017 nt) PP_5081 Type IV pili biogenesis protein
* ? AE015451 5825709 =55 (0.950)3 (0.050) 3/326 NT 5.0% coding (586/813 nt) thiG thiazole synthase
?AE015451 5825778 = 61 (1.110)coding (517/813 nt) thiG thiazole synthase
* ? AE015451 5839023 =46 (0.800)5 (0.090) 5/328 NT 9.6% coding (393/993 nt) yheT putative hydrolase
?AE015451 5839105 = 50 (0.900)coding (475/993 nt) yheT putative hydrolase
* ? AE015451 = 587028946 (0.800)4 (0.080) 4/284 NT 8.8% intergenic (+50/+84) PP_5144/ptsP conserved protein of unknown function/phosphoenolpyruvate‑dependent regulator (with NPR and NTR proteins)
?AE015451 = 5870324 45 (0.940)intergenic (+85/+49) PP_5144/ptsP conserved protein of unknown function/phosphoenolpyruvate‑dependent regulator (with NPR and NTR proteins)
* ? AE015451 = 589200361 (1.060)4 (0.070) 4/318 NT 6.6% coding (621/831 nt) PP_5166 Sigma‑54 dependent transcriptional regulator
?AE015451 = 5892260 57 (1.060)coding (364/831 nt) PP_5166 Sigma‑54 dependent transcriptional regulator
* ? AE015451 = 592707344 (0.760)3 (0.050) 3/326 NT 6.5% coding (822/1623 nt) PP_5195 putative Iron ABC transporter, permease protein
?AE015451 = 5927083 44 (0.800)coding (812/1623 nt) PP_5195 putative Iron ABC transporter, permease protein
* ? AE015451 = 596972946 (0.800)5 (0.090) 5/318 NT 10.2% coding (1565/2124 nt) PP_5236 conserved protein of unknown function
?AE015451 = 5969738 45 (0.840)coding (1556/2124 nt) PP_5236 conserved protein of unknown function
* ? AE015451 = 598866845 (0.780)8 (0.140) 7/328 NT 17.7% coding (1750/1788 nt) kefB‑III glutathione‑regulated potassium/H+ antiporter
?AE015451 5988956 = 31 (0.560)intergenic (+250/‑296) kefB‑III/PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
* ? AE015451 = 598875740 (0.690)21 (0.380) 19/326 NT 39.6% intergenic (+51/‑495) kefB‑III/PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
?AE015451 5988979 = 26 (0.470)intergenic (+273/‑273) kefB‑III/PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
* ? AE015451 = 598875940 (0.690)4 (0.070) 4/328 NT 10.5% intergenic (+53/‑493) kefB‑III/PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
?AE015451 5988951 = 30 (0.540)intergenic (+245/‑301) kefB‑III/PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
* ? AE015451 = 598877140 (0.690)9 (0.160) 9/326 NT 20.9% intergenic (+65/‑481) kefB‑III/PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
?AE015451 5988963 = 30 (0.550)intergenic (+257/‑289) kefB‑III/PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
* ? AE015451 5999458 =32 (0.560)4 (0.070) 4/324 NT 10.6% intergenic (‑313/‑8) ycaC‑IV/PP_5256 putative hydrolase/Cyclic nucleotide‑binding protein
?AE015451 5999593 = 37 (0.680)coding (128/1428 nt) PP_5256 Cyclic nucleotide‑binding protein
* ? AE015451 6070767 =76 (1.320)4 (0.070) 4/322 NT 5.2% intergenic (‑123/+40) PP_5324/phoU Response regulator/phosphate transport‑associated protein
?AE015451 6070789 = 73 (1.350)intergenic (‑145/+18) PP_5324/phoU Response regulator/phosphate transport‑associated protein
* ? AE015451 6071413 =83 (1.440)6 (0.110) 4/322 NT 7.5% coding (165/771 nt) phoU phosphate transport‑associated protein
?AE015451 6071506 = 70 (1.290)coding (72/771 nt) phoU phosphate transport‑associated protein
* ? AE015451 = 607784460 (1.040)7 (0.140) 7/294 NT 11.0% intergenic (‑146/+92) PP_5329/PP_5330 putative phosphate ABC transporter, periplasmic phosphate‑binding protein/Major facilitator family transporter
?AE015451 = 6077896 62 (1.250)intergenic (‑198/+40) PP_5329/PP_5330 putative phosphate ABC transporter, periplasmic phosphate‑binding protein/Major facilitator family transporter
* ? AE015451 = 611512354 (0.940)4 (0.070) 4/320 NT 7.3% coding (564/1287 nt) PP_5365 putative fatty acid methyltransferase
?AE015451 = 6115151 51 (0.950)coding (536/1287 nt) PP_5365 putative fatty acid methyltransferase