mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 195,424 | G→A | 11.5% | V310V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 195,505 | C→G | 9.0% | A337A (GCC→GCG) | PP_0168 → | putative surface adhesion protein |
| RA | 195,559 | C→A | 24.2% | T355T (ACC→ACA) | PP_0168 → | putative surface adhesion protein |
| RA | 195,589 | T→C | 10.7% | N365N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,634 | C→T | 25.3% | T380T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 195,685 | T→C | 8.2% | T397T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,706 | C→T | 7.4% | N404N (AAC→AAT) | PP_0168 → | putative surface adhesion protein |
| RA | 195,724 | A→G | 9.6% | V410V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 195,732 | A→C | 19.5% | N413T (AAC→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,852 | G→A | 9.9% | S453N (AGC→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,895 | G→C | 9.1% | T467T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,979 | G→A | 7.9% | V495V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,027 | T→C | 12.6% | T511T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,069 | T→C | 9.1% | G525G (GGT→GGC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,105 | C→G | 13.5% | A537A (GCC→GCG) | PP_0168 → | putative surface adhesion protein |
| RA | 196,132 | G→C | 23.0% | T546T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,159 | G→A | 14.3% | T555T (ACG→ACA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,195 | G→C | 12.4% | T567T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,234 | T→C | 11.0% | T580T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,285 | T→C | 18.0% | T597T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,372 | A→G | 10.1% | K626K (AAA→AAG) | PP_0168 → | putative surface adhesion protein |
| RA | 196,390 | T→C | 27.6% | D632D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,438 | T→C | 16.7% | S648S (AGT→AGC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,627 | A→C | 14.3% | T711T (ACA→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,752 | A→G | 14.3% | N753S (AAC→AGC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,879 | G→A | 20.7% | V795V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,885 | C→T | 19.9% | T797T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 196,951 | C→G | 6.1% | T819T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 196,972 | G→A | 10.9% | K826K (AAG→AAA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,990 | T→C | 6.8% | D832D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,089 | T→C | 17.2% | N865N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,095 | C→G | 5.1% | T867T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,179 | A→G | 12.4% | V895V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,395 | G→C | 13.4% | T967T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,551 | C→G | 10.1% | T1019T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,572 | G→A | 17.5% | K1026K (AAG→AAA) | PP_0168 → | putative surface adhesion protein |
| RA | 197,590 | T→C | 11.5% | D1032D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,632 | T→C | 38.5% | T1046T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,695 | G→C | 23.0% | T1067T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,715 | C→A | 11.6% | T1074N (ACC→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,834 | T→C | 20.6% | L1114L (TTG→CTG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,866 | G→C | 22.8% | A1124A (GCG→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,869 | T→C | 21.2% | G1125G (GGT→GGC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,872 | A→G | 11.3% | K1126K (AAA→AAG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,905 | C→G | 8.7% | A1137A (GCC→GCG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,926 | C→T | 10.5% | G1144G (GGC→GGT) | PP_0168 → | putative surface adhesion protein |
| RA | 199,315 | C→T | 6.8% | G1607G (GGC→GGT) | PP_0168 → | putative surface adhesion protein |
| RA | 199,318 | T→G | 11.0% | T1608T (ACT→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 199,360 | T→C | 9.3% | A1622A (GCT→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 199,550 | T→C | 8.1% | L1686L (TTG→CTG) | PP_0168 → | putative surface adhesion protein |
| RA | 199,744 | T→C | 13.7% | N1750N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 200,113 | T→C | 6.0% | N1873N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 200,473 | T→C | 7.7% | G1993G (GGT→GGC) | PP_0168 → | putative surface adhesion protein |
| RA | 201,798 | T→C | 7.4% | V2435A (GTA→GCA) | PP_0168 → | putative surface adhesion protein |
| RA | 203,547 | A→C | 12.1% | E3018A (GAG→GCG) | PP_0168 → | putative surface adhesion protein |
| RA | 203,674 | T→C | 7.6% | D3060D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 205,663 | C→T | 5.3% | G3723G (GGC→GGT) | PP_0168 → | putative surface adhesion protein |
| RA | 205,672 | T→C | 6.6% | T3726T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 206,782 | T→C | 9.5% | A4096A (GCT→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 206,821 | T→C | 9.6% | G4109G (GGT→GGC) | PP_0168 → | putative surface adhesion protein |
| RA | 210,088 | A→G | 6.3% | E5198E (GAA→GAG) | PP_0168 → | putative surface adhesion protein |
| RA | 210,229 | T→C | 7.1% | V5245V (GTT→GTC) | PP_0168 → | putative surface adhesion protein |
| RA | 210,319 | C→G | 13.6% | T5275T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 210,337 | C→T | 6.3% | G5281G (GGC→GGT) | PP_0168 → | putative surface adhesion protein |
| RA | 210,343 | G→A | 8.6% | P5283P (CCG→CCA) | PP_0168 → | putative surface adhesion protein |
| RA | 210,388 | G→A | 10.3% | K5298K (AAG→AAA) | PP_0168 → | putative surface adhesion protein |
| RA | 210,430 | A→C | 8.4% | A5312A (GCA→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 211,003 | A→G | 6.1% | P5503P (CCA→CCG) | PP_0168 → | putative surface adhesion protein |
| RA | 211,783 | T→C | 8.9% | D5763D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 212,134 | T→C | 9.9% | D5880D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 212,155 | T→C | 9.8% | G5887G (GGT→GGC) | PP_0168 → | putative surface adhesion protein |
| RA | 212,506 | T→C | 6.5% | D6004D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 212,650 | G→A | 6.7% | K6052K (AAG→AAA) | PP_0168 → | putative surface adhesion protein |
| RA | 212,737 | T→C | 9.4% | A6081A (GCT→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 212,740 | C→T | 7.7% | G6082G (GGC→GGT) | PP_0168 → | putative surface adhesion protein |
| RA | 212,794 | C→T | 8.1% | D6100D (GAC→GAT) | PP_0168 → | putative surface adhesion protein |
| RA | 213,619 | T→C | 11.5% | I6375I (ATT→ATC) | PP_0168 → | putative surface adhesion protein |
| RA | 213,874 | T→G | 11.0% | T6460T (ACT→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 213,918 | C→T | 10.4% | P6475L (CCG→CTG) | PP_0168 → | putative surface adhesion protein |
| RA | 215,383 | A→G | 6.9% | E6963E (GAA→GAG) | PP_0168 → | putative surface adhesion protein |
| RA | 258,506 | C→T | 5.4% | L14F (CTC→TTC) | PP_0207 → | putative Nitrate ABC transporter, periplasmic nitrate‑binding protein |
| RA | 258,510 | Δ1 bp | 5.3% | coding (44/1407 nt) | PP_0207 → | putative Nitrate ABC transporter, periplasmic nitrate‑binding protein |
| RA | 258,511 | Δ1 bp | 5.4% | coding (45/1407 nt) | PP_0207 → | putative Nitrate ABC transporter, periplasmic nitrate‑binding protein |
| RA | 258,515:1 | +A | 5.4% | coding (49/1407 nt) | PP_0207 → | putative Nitrate ABC transporter, periplasmic nitrate‑binding protein |
| RA | 258,515:2 | +G | 5.4% | coding (49/1407 nt) | PP_0207 → | putative Nitrate ABC transporter, periplasmic nitrate‑binding protein |
| RA | 258,519 | A→G | 5.6% | N18S (AAC→AGC) | PP_0207 → | putative Nitrate ABC transporter, periplasmic nitrate‑binding protein |
| RA | 278,742:1 | +A | 100% | intergenic (‑237/+77) | PP_0224 ← / ← sctC | Monooxygenase, DszC family/sulfur compound ABC transporter ‑ ATP‑binding subunit |
| JC | 303,121 | +GCT | 89.4% | coding (1286/1314 nt) | envZ → | Osmolarity sensor protein EnvZ |
| RA | 307,865:1 | +C | 100% | intergenic (+880/‑989) | hslO → / → PP_0254 | 33 kDa chaperonin/conserved protein of unknown function |
| RA | 336,124:1 | +T | 100% | coding (209/237 nt) | PP_0278 → | conserved protein of unknown function |
| RA | 353,067 | A→G | 100% | intergenic (+34/+84) | hisF → / ← cbcV | Imidazole glycerol phosphate synthase subunit HisF/choline / betaine / carnitine ABC transporter ‑ ATP binding subunit |
| RA | 499,203 | A→G | 100% | intergenic (+47/‑249) | uhpA → / → PP_0411 | DNA‑binding response regulator UhpA/Polyamine ABC transporter, ATP‑binding protein |
| RA | 699,722 | A→G | 45.3% | intergenic (+115/‑129) | PP_t06 → / → PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| RA | 863,376 | A→T | 6.3% | A170A (GCA→GCT) | hemH → | Ferrochelatase |
| RA | 940,149 | T→C | 6.6% | I1825V (ATT→GTT) | PP_0806 ← | putative Surface adhesion protein |
| RA | 940,152 | A→G | 6.8% | L1824L (TTG→CTG) | PP_0806 ← | putative Surface adhesion protein |
| RA | 940,159 | A→G | 5.9% | N1821N (AAT→AAC) | PP_0806 ← | putative Surface adhesion protein |
| RA | 1,070,246:1 | +GA | 100% | intergenic (+46/+96) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger related‑protein |
| RA | 1,126,645:1 | +C | 100% | intergenic (‑99/+50) | tdcG‑II ← / ← gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| RA | 1,327,121 | C→T | 44.6% | intergenic (+97/‑196) | PP_16SE → / → PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| RA | 1,397,918 | C→A | 10.2% | A289D (GCC→GAC) ‡ | tolA → | colicin S4 and filamentous phage transport system |
| RA | 1,397,919 | C→A | 10.9% | A289A (GCC→GCA) ‡ | tolA → | colicin S4 and filamentous phage transport system |
| RA | 1,397,922 | G→C | 10.4% | E290D (GAG→GAC) | tolA → | colicin S4 and filamentous phage transport system |
| RA | 1,397,925 | C→A | 10.4% | G291G (GGC→GGA) | tolA → | colicin S4 and filamentous phage transport system |
| RA | 1,397,926 | T→C | 10.4% | W292R (TGG→CGG) ‡ | tolA → | colicin S4 and filamentous phage transport system |
| RA | 1,397,928 | G→T | 10.9% | W292C (TGG→TGT) ‡ | tolA → | colicin S4 and filamentous phage transport system |
| RA | 1,397,931 | A→C | 10.4% | A293A (GCA→GCC) | tolA → | colicin S4 and filamentous phage transport system |
| RA | 1,397,933 | G→A | 9.8% | R294H (CGT→CAT) ‡ | tolA → | colicin S4 and filamentous phage transport system |
| RA | 1,397,934 | T→G | 10.7% | R294R (CGT→CGG) ‡ | tolA → | colicin S4 and filamentous phage transport system |
| RA | 1,397,938 | C→T | 9.7% | P296S (CCT→TCT) ‡ | tolA → | colicin S4 and filamentous phage transport system |
| RA | 1,397,940 | T→G | 9.6% | P296P (CCT→CCG) ‡ | tolA → | colicin S4 and filamentous phage transport system |
| RA | 1,397,941 | T→G | 9.6% | S297A (TCC→GCC) | tolA → | colicin S4 and filamentous phage transport system |
| RA | 1,419,548:1 | +C | 100% | intergenic (‑37/+99) | PP_1242 ← / ← PP_1244 | conserved protein of unknown function/conserved protein of unknown function |
| RA | 1,499,480 | 2 bp→AC | 100% | intergenic (+57/‑106) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| RA | 1,499,498 | 1 bp→CG | 100% | intergenic (+75/‑89) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| RA | 1,499,506:1 | +C | 100% | intergenic (+83/‑81) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| RA | 1,526,571 | G→T | 5.0% | C253F (TGC→TTC) | ddlB → | D‑alanine‑‑D‑alanine ligase B |
| RA | 1,530,160 | C→T | 100% | R395C (CGT→TGT) noncoding (49/244 nt) |
ftsZ → PP_mr19 → |
Cell division protein FtsZ Xoo8 ncRNA |
| JC | 1,531,732 | Δ107 bp | 29.3% | coding (38‑144/630 nt) | PP_1344 ← | conserved protein of unknown function |
| JC | 1,780,067 | Δ62 bp | 20.5% | intergenic (+26/+19) | PP_1587 → / ← dapC | NhaP‑type Na+/H+ and K+/H+ antiporters/N‑succinyl‑L,L‑diaminopimelate aminotransferase alternative |
| RA | 1,844,166 | T→A | 100% | K210* (AAG→TAG) | gacS ← | Sensor protein GacS |
| RA | 1,932,638:1 | +C | 100% | intergenic (‑105/+45) | rluA ← / ← minE | 23S rRNA (746) and tRNA (32) pseudouridine synthase/Cell division topological specificity factor |
| RA | 2,087,314 | C→G | 8.6% | intergenic (+127/+791) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,087,315:1 | +C | 8.8% | intergenic (+128/+790) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,087,635 | T→C | 19.9% | intergenic (+448/+470) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,087,670 | C→T | 19.6% | intergenic (+483/+435) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,087,672 | C→G | 19.6% | intergenic (+485/+433) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,087,676 | G→C | 20.4% | intergenic (+489/+429) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,087,677 | C→A | 21.0% | intergenic (+490/+428) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,087,690 | G→A | 23.1% | intergenic (+503/+415) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,087,719:1 | +A | 15.8% | intergenic (+532/+386) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,087,726:1 | +T | 14.6% | intergenic (+539/+379) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,256,267 | C→T | 15.1% | intergenic (+327/‑377) | asd → / → PP_1990 | Aspartate‑semialdehyde dehydrogenase/transposase |
| RA | 2,256,285 | T→C | 7.8% | intergenic (+345/‑359) | asd → / → PP_1990 | Aspartate‑semialdehyde dehydrogenase/transposase |
| RA | 2,256,290 | C→T | 17.6% | intergenic (+350/‑354) | asd → / → PP_1990 | Aspartate‑semialdehyde dehydrogenase/transposase |
| RA | 2,550,125 | G→A | 56.9% | noncoding (1436/1522 nt) | PP_16SF → | 16S ribosomal RNA |
| RA | 3,142,272 | C→T | 100% | A74V (GCG→GTG) | PP_2758 → | putative Ribose ABC transporter, periplasmic ribose‑binding protein |
| RA | 3,845,703:1 | +G | 100% | intergenic (‑70/+28) | PP_3394 ← / ← PP_3395 | putative 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/Transcriptional regulator, LysR family |
| RA | 3,951,159 | T→C | 100% | intergenic (‑123/+72) | PP_3486 ← / ← PP_3487 | putative cytochrome c/conserved exported protein of unknown function |
| RA | 3,951,161 | A→T | 100% | intergenic (‑125/+70) | PP_3486 ← / ← PP_3487 | putative cytochrome c/conserved exported protein of unknown function |
| RA | 4,022,325 | Δ1 bp | 14.3% | intergenic (‑20/+648) | PP_3547 ← / ← emrB | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit |
| RA | 4,053,476 | A→T | 8.7% | Q17L (CAG→CTG) | PP_3573 → | putative Monooxygenase |
| RA | 4,348,705 | A→G | 44.2% | intergenic (‑70/+404) | PP_3820 ← / ← galU | Group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| RA | 4,586,030 | 2 bp→TC | 100% | intergenic (+113/+101) | PP_4061 → / ← PP_4063 | conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase |
| RA | 4,586,033:1 | +G | 100% | intergenic (+116/+99) | PP_4061 → / ← PP_4063 | conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase |
| RA | 4,586,056:1 | +C | 100% | intergenic (+139/+76) | PP_4061 → / ← PP_4063 | conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase |
| RA | 4,740,805 | Δ1 bp | 100% | intergenic (+42/+711) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,816 | T→G | 100% | intergenic (+53/+700) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,819 | 2 bp→CT | 100% | intergenic (+56/+696) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,228:1 | +C | 12.1% | intergenic (+465/+288) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,229 | A→C | 87.9% | intergenic (+466/+287) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,230 | A→G | 12.1% | intergenic (+467/+286) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,231 | C→G | 87.9% | intergenic (+468/+285) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,232 | C→T | 12.1% | intergenic (+469/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,234 | C→T | 87.9% | intergenic (+471/+282) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,235 | C→T | 12.1% | intergenic (+472/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,236 | G→T | 87.9% | intergenic (+473/+280) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,237 | C→G | 87.9% | intergenic (+474/+279) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,238 | C→G | 12.1% | intergenic (+475/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,239 | A→G | 87.9% | intergenic (+476/+277) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,240 | A→C | 12.1% | intergenic (+477/+276) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,241 | C→T | 12.1% | intergenic (+478/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,243 | G→T | 86.0% | intergenic (+480/+273) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,244 | C→G | 86.2% | intergenic (+481/+272) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,245 | A→C | 86.2% | intergenic (+482/+271) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,255 | C→T | 100% | intergenic (+492/+261) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,257 | A→C | 100% | intergenic (+494/+259) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,260 | 2 bp→GC | 100% | intergenic (+497/+255) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,263 | A→C | 100% | intergenic (+500/+253) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,272 | A→G | 100% | intergenic (+509/+244) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,274 | A→C | 100% | intergenic (+511/+242) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,276 | G→C | 100% | intergenic (+513/+240) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,278 | C→T | 100% | intergenic (+515/+238) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,283:1 | +T | 100% | intergenic (+520/+233) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,289 | C→G | 100% | intergenic (+526/+227) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,292 | C→T | 100% | intergenic (+529/+224) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,294 | C→G | 100% | intergenic (+531/+222) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,296 | A→C | 100% | intergenic (+533/+220) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,298 | C→T | 100% | intergenic (+535/+218) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| JC | 4,808,177 | Δ103 bp | 61.2% | intergenic (‑286/‑167) | PP_4234 ← / → dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| RA | 4,907,411 | Δ1 bp | 6.7% | coding (378/939 nt) | PP_4316 ← | D‑isomer specific 2‑hydroxyacid dehydrogenase family protein |
| RA | 4,907,412 | G→A | 6.7% | T126M (ACG→ATG) | PP_4316 ← | D‑isomer specific 2‑hydroxyacid dehydrogenase family protein |
| RA | 4,907,416 | T→C | 6.2% | S125G (AGC→GGC) | PP_4316 ← | D‑isomer specific 2‑hydroxyacid dehydrogenase family protein |
| RA | 4,907,417 | G→A | 6.6% | A124A (GCC→GCT) | PP_4316 ← | D‑isomer specific 2‑hydroxyacid dehydrogenase family protein |
| RA | 4,907,420:1 | +C | 6.8% | coding (369/939 nt) | PP_4316 ← | D‑isomer specific 2‑hydroxyacid dehydrogenase family protein |
| RA | 4,907,421 | T→G | 6.8% | D123A (GAT→GCT) | PP_4316 ← | D‑isomer specific 2‑hydroxyacid dehydrogenase family protein |
| RA | 4,964,454 | C→T | 100% | D302N (GAC→AAC) | fleQ ← | Transcriptional regulator FleQ |
| JC | 4,980,585 | +GGC | 100% | intergenic (‑24/+44) | PP_4387 ← / ← flgE | conserved exported protein of unknown function/Flagellar hook protein FlgE |
| JC | 5,201,568 | Δ98 bp | 34.8% | intergenic (‑54/‑29) | PP_4582 ← / → PP_4583 | conserved membrane protein of unknown function/putative Peptidase |
| JC | 5,225,843 | 164 bp→TTGT | 5.6% | coding (81‑244/876 nt) | PP_4605 → | Transcriptional regulator, AraC family |
| RA | 5,304,902 | C→A | 5.3% | G784C (GGC→TGC) | recC ← | ATP‑dependent DNA helicase and dsDNA/ssDNA exonuclease, ssDNA endonuclease, recombinase subunit |
| RA | 5,304,903 | C→T | 5.3% | Q783Q (CAG→CAA) | recC ← | ATP‑dependent DNA helicase and dsDNA/ssDNA exonuclease, ssDNA endonuclease, recombinase subunit |
| RA | 5,335,000 | T→A | 5.4% | I477N (ATC→AAC) | PP_4695 → | Sensory box histidine kinase |
| JC | 5,555,608 | +GCC | 100% | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | conserved protein of unknown function/putative methyl‑accepting chemotaxis transducer |
| RA | 5,674,750:1 | +G | 100% | intergenic (+112/+28) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding protein, acidic stress response factor |
| RA | 5,674,753 | G→C | 100% | intergenic (+115/+25) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding protein, acidic stress response factor |
| JC | 5,681,415 | +CGGG | 100% | intergenic (‑133/+71) | PP_4986 ← / ← PP_4987 | Channel protein, hemolysin III family/putative Chemotaxis protein |
| RA | 5,739,789 | A→C | 6.1% | E240A (GAA→GCA) | hutF → | probable formiminoglutamate deiminase |
| RA | 5,988,809 | G→A | 21.6% | intergenic (+103/‑443) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,819 | T→C | 22.2% | intergenic (+113/‑433) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,824 | C→T | 23.5% | intergenic (+118/‑428) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,825 | G→T | 23.5% | intergenic (+119/‑427) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,826 | C→T | 23.6% | intergenic (+120/‑426) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,829 | A→G | 24.7% | intergenic (+123/‑423) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,835 | G→C | 27.7% | intergenic (+129/‑417) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,837 | C→G | 29.4% | intergenic (+131/‑415) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,840 | C→T | 31.4% | intergenic (+134/‑412) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,844 | C→G | 33.3% | intergenic (+138/‑408) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,848 | C→T | 30.5% | intergenic (+142/‑404) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,850 | C→T | 32.3% | intergenic (+144/‑402) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,889 | C→A | 25.6% | intergenic (+183/‑363) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,894 | C→T | 27.8% | intergenic (+188/‑358) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,895 | A→G | 27.8% | intergenic (+189/‑357) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,905 | T→C | 32.5% | intergenic (+199/‑347) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,911 | Δ1 bp | 28.7% | intergenic (+205/‑341) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 6,013,885 | T→C | 100% | intergenic (+90/+20) | xpt → / ← PP_5266 | Xanthine phosphoribosyltransferase/putative acetyl‑CoA hydrolase family protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AE015451 | 486246 | 486449 | 204 | 19 [18] | [18] 21 | [apaG] | [apaG] |
| * | * | ÷ | AE015451 | 790145 | 790393 | 249 | 21 [18] | [18] 19 | [PP_0676] | [PP_0676] |
| * | * | ÷ | AE015451 | 965535 | 965729 | 195 | 19 [18] | [18] 19 | ptxC | putative phosphonate transport system permease protein PtxC |
| * | * | ÷ | AE015451 | 1367509 | 1367977 | 469 | 19 [17] | [18] 19 | [PP_1193] | [PP_1193] |
| * | * | ÷ | AE015451 | 1421685 | 1422125 | 441 | 19 [18] | [18] 19 | PP_1246 | conserved exported protein of unknown function |
| * | * | ÷ | AE015451 | 1544242 | 1544484–1544457 | 216–243 | 21 [18] | [18] 19 | [mdfA] | [mdfA] |
| * | * | ÷ | AE015451 | 1691034 | 1691363 | 330 | 19 [17] | [17] 19 | [PP_1487] | [PP_1487] |
| * | * | ÷ | AE015451 | 2027313 | 2027588 | 276 | 20 [17] | [18] 19 | wbpL | Glycosyl transferase WbpL |
| * | * | ÷ | AE015451 | 2038104 | 2038420 | 317 | 19 [18] | [18] 22 | [rffE] | [rffE] |
| * | * | ÷ | AE015451 | 2039438 | 2039692 | 255 | 19 [18] | [18] 19 | [rffE]–[PP_1812] | [rffE],[PP_1812] |
| * | * | ÷ | AE015451 | 2095153 | 2095332 | 180 | 19 [17] | [17] 19 | [alaA] | [alaA] |
| * | * | ÷ | AE015451 | 2142014 | 2142566 | 553 | 20 [18] | [18] 19 | [PP_1897]–[PP_1898] | [PP_1897],[PP_1898] |
| * | * | ÷ | AE015451 | 2388175 | 2388381 | 207 | 21 [16] | [18] 21 | [pyrD] | [pyrD] |
| * | * | ÷ | AE015451 | 2478288 | 2478585 | 298 | 19 [18] | [18] 20 | [PP_2172] | [PP_2172] |
| * | * | ÷ | AE015451 | 2569376 | 2569624 | 249 | 19 [18] | [17] 20 | [PP_2252] | [PP_2252] |
| * | * | ÷ | AE015451 | 2960678 | 2961028 | 351 | 19 [17] | [18] 19 | PP_2590 | Outer membrane ferric siderophore receptor |
| * | * | ÷ | AE015451 | 3286784 | 3287306 | 523 | 19 [17] | [17] 20 | [PP_2889]–[xthA] | [PP_2889],[xthA] |
| * | * | ÷ | AE015451 | 3848740 | 3848941 | 202 | 19 [18] | [16] 20 | PP_3397 | conserved exported protein of unknown function |
| * | * | ÷ | AE015451 | 3985521 | 3985781 | 261 | 20 [18] | [18] 19 | [PP_3513]–[oplB] | [PP_3513],[oplB] |
| * | * | ÷ | AE015451 | 4705155 | 4705465 | 311 | 20 [18] | [18] 19 | [kdpA]–[PP_4162] | [kdpA],kdpF,[PP_4162] |
| * | * | ÷ | AE015451 | 4839164 | 4839390 | 227 | 21 [17] | [18] 19 | [ccoP‑I]–[PP_4254] | [ccoP‑I],[PP_4254] |
| * | * | ÷ | AE015451 | 5401198 | 5401588 | 391 | 19 [18] | [16] 20 | PP_4743/PP_4745 | conserved protein of unknown function/transposase |
| * | * | ÷ | AE015451 | 5660458 | 5660670 | 213 | 19 [18] | [18] 19 | ligB | DNA ligase B |
| * | * | ÷ | AE015451 | 5696575 | 5696739 | 165 | 26 [18] | [18] 19 | pyrC'/hslV | dihydroorotase‑like protein/peptidase component of the ATP‑dependent HslVU protease |
| * | * | ÷ | AE015451 | 5816897 | 5817312 | 416 | 22 [18] | [15] 20 | [pilT] | [pilT] |
| * | * | ÷ | AE015451 | 5835116 | 5835351 | 236 | 21 [18] | [17] 19 | [PP_5113]–[PP_5114] | [PP_5113],[PP_5114] |
| * | * | ÷ | AE015451 | 5858250 | 5858573 | 324 | 19 [18] | [18] 19 | PP_5134 | conserved protein of unknown function |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 181541 | NA (NA) | 5 (0.080) | 4/336 | NT | NA | intergenic (+7/‑126) | PP_23SB/PP_r01 | 23S ribosomal RNA/5S ribosomal RNA |
| ? | AE015451 | = 529682 | NA (NA) | intergenic (+18/‑102) | PP_23SC/PP_5SC | 23S ribosomal RNA/5S ribosomal RNA | |||||
| * | ? | AE015451 | 205652 = | 93 (1.500) | 6 (0.100) | 6/328 | NT | 6.3% | coding (11158/26049 nt) | PP_0168 | putative surface adhesion protein |
| ? | AE015451 | 207646 = | NA (NA) | coding (13152/26049 nt) | PP_0168 | putative surface adhesion protein | |||||
| * | ? | AE015451 | = 271323 | 50 (0.810) | 4 (0.070) | 4/330 | NT | 7.4% | coding (1224/1896 nt) | PP_0218 | Sensory box protein |
| ? | AE015451 | = 271335 | 52 (0.880) | coding (1236/1896 nt) | PP_0218 | Sensory box protein | |||||
| * | ? | AE015451 | = 299909 | 56 (0.910) | 7 (0.120) | 7/326 | NT | 12.0% | coding (1217/2586 nt) | yhgF | putative transcriptional accessory protein |
| ? | AE015451 | = 300062 | 50 (0.850) | coding (1064/2586 nt) | yhgF | putative transcriptional accessory protein | |||||
| * | ? | AE015451 | 300399 = | 63 (1.020) | 3 (0.050) | 3/328 | NT | 5.4% | coding (727/2586 nt) | yhgF | putative transcriptional accessory protein |
| ? | AE015451 | 300509 = | 45 (0.760) | coding (617/2586 nt) | yhgF | putative transcriptional accessory protein | |||||
| * | ? | AE015451 | 378076 = | 81 (1.310) | 4 (0.070) | 4/318 | NT | 5.9% | intergenic (+19/+46) | PP_0314/gbcA | conserved protein of unknown function/putative glycine‑betaine dioxygenase subunit |
| ? | AE015451 | 378109 = | 53 (0.930) | intergenic (+52/+13) | PP_0314/gbcA | conserved protein of unknown function/putative glycine‑betaine dioxygenase subunit | |||||
| * | ? | AE015451 | 449057 = | 46 (0.740) | 6 (0.100) | 4/328 | NT | 12.5% | coding (228/1779 nt) | PP_0370 | Acyl‑CoA dehydrogenase family protein |
| ? | AE015451 | 449107 = | 40 (0.680) | coding (278/1779 nt) | PP_0370 | Acyl‑CoA dehydrogenase family protein | |||||
| * | ? | AE015451 | 503644 = | 38 (0.610) | 9 (0.150) | 8/326 | NT | 23.7% | coding (675/828 nt) | PP_0414 | Polyamine ABC transporter, permease protein |
| ? | AE015451 | 503701 = | 22 (0.380) | coding (732/828 nt) | PP_0414 | Polyamine ABC transporter, permease protein | |||||
| * | ? | AE015451 | 521092 = | 66 (1.070) | 4 (0.070) | 4/328 | NT | 6.2% | coding (204/1092 nt) | anmK | Anhydro‑N‑acetylmuramic acid kinase |
| ? | AE015451 | 521162 = | 58 (0.980) | coding (134/1092 nt) | anmK | Anhydro‑N‑acetylmuramic acid kinase | |||||
| * | ? | AE015451 | = 601414 | 41 (0.660) | 5 (0.090) | 5/324 | NT | 11.8% | coding (765/1137 nt) | ribD | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5‑amino‑6‑(5‑phosphoribosylamino)uracil reductase |
| ? | AE015451 | = 601573 | 36 (0.620) | coding (924/1137 nt) | ribD | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5‑amino‑6‑(5‑phosphoribosylamino)uracil reductase | |||||
| * | ? | AE015451 | 611504 = | NA (NA) | 7 (0.120) | 7/330 | NT | NA | coding (401/966 nt) | PP_0526 | transposase |
| ? | AE015451 | 611533 = | NA (NA) | coding (430/966 nt) | PP_0526 | transposase | |||||
| * | ? | AE015451 | = 611510 | NA (NA) | 9 (0.150) | 8/330 | NT | NA | coding (407/966 nt) | PP_0526 | transposase |
| ? | AE015451 | = 611525 | NA (NA) | coding (422/966 nt) | PP_0526 | transposase | |||||
| * | ? | AE015451 | = 615343 | 47 (0.760) | 3 (0.050) | 3/312 | NT | 6.7% | coding (143/243 nt) | xseB | Exodeoxyribonuclease 7 small subunit |
| ? | AE015451 | = 615327 | 41 (0.730) | coding (159/243 nt) | xseB | Exodeoxyribonuclease 7 small subunit | |||||
| * | ? | AE015451 | = 631260 | 67 (1.080) | 4 (0.070) | 3/326 | NT | 5.7% | coding (433/1449 nt) | PP_0544 | Ethanolamine transporter |
| ? | AE015451 | = 631305 | 70 (1.190) | coding (388/1449 nt) | PP_0544 | Ethanolamine transporter | |||||
| * | ? | AE015451 | = 654184 | 57 (0.920) | 3 (0.050) | 3/330 | NT | 5.1% | coding (559/1962 nt) | ctpL | Methyl‑accepting chemotaxis protein CtpL |
| ? | AE015451 | = 654231 | 58 (0.980) | coding (512/1962 nt) | ctpL | Methyl‑accepting chemotaxis protein CtpL | |||||
| * | ? | AE015451 | 682075 = | 46 (0.740) | 3 (0.050) | 3/316 | NT | 6.7% | coding (1198/1944 nt) | PP_0584 | Methyl‑accepting chemotaxis transducer |
| ? | AE015451 | 682089 = | 41 (0.720) | coding (1184/1944 nt) | PP_0584 | Methyl‑accepting chemotaxis transducer | |||||
| * | ? | AE015451 | = 728937 | 64 (1.030) | 5 (0.080) | 5/330 | NT | 7.4% | coding (426/963 nt) | rluD | 23S rRNA pseudouridine(1911,1915,1917) synthase |
| ? | AE015451 | = 728945 | 64 (1.080) | coding (434/963 nt) | rluD | 23S rRNA pseudouridine(1911,1915,1917) synthase | |||||
| * | ? | AE015451 | = 779916 | 63 (1.020) | 4 (0.070) | 4/328 | NT | 6.0% | coding (555/954 nt) | PP_0670 | Transporter, bile acid/Na+ symporter family |
| ? | AE015451 | = 779919 | 65 (1.100) | coding (552/954 nt) | PP_0670 | Transporter, bile acid/Na+ symporter family | |||||
| * | ? | AE015451 | 873907 = | 60 (0.970) | 3 (0.050) | 3/330 | NT | 5.2% | coding (265/621 nt) | PP_0758 | conserved protein of unknown function |
| ? | AE015451 | 873953 = | 52 (0.880) | coding (311/621 nt) | PP_0758 | conserved protein of unknown function | |||||
| * | ? | AE015451 | 907868 = | 69 (1.120) | 3 (0.050) | 3/320 | NT | 5.1% | coding (343/777 nt) | yjjV | putative hydrolase |
| ? | AE015451 | 908152 = | 47 (0.820) | coding (59/777 nt) | yjjV | putative hydrolase | |||||
| * | ? | AE015451 | = 923303 | 60 (0.970) | 4 (0.070) | 4/318 | NT | 6.6% | coding (1890/2169 nt) | PP_0804 | Protein secretion ABC efflux system, permease and ATP‑binding protein |
| ? | AE015451 | = 923379 | 58 (1.010) | coding (1814/2169 nt) | PP_0804 | Protein secretion ABC efflux system, permease and ATP‑binding protein | |||||
| * | ? | AE015451 | 923641 = | 60 (0.970) | 6 (0.110) | 5/304 | NT | 10.3% | coding (1552/2169 nt) | PP_0804 | Protein secretion ABC efflux system, permease and ATP‑binding protein |
| ? | AE015451 | 923661 = | 52 (0.950) | coding (1532/2169 nt) | PP_0804 | Protein secretion ABC efflux system, permease and ATP‑binding protein | |||||
| * | ? | AE015451 | = 981334 | 63 (1.020) | 5 (0.090) | 5/324 | NT | 6.4% | coding (211/1863 nt) | hscA | DnaK‑like molecular chaperone specific for IscU |
| ? | AE015451 | = 981392 | 86 (1.480) | coding (269/1863 nt) | hscA | DnaK‑like molecular chaperone specific for IscU | |||||
| * | ? | AE015451 | 1025267 = | 60 (0.970) | 13 (0.250) | 8/290 | NT | 21.2% | intergenic (‑121/+108) | opdP/dppA‑II | glycine‑glutamate dipeptide porin/dipeptide ABC transporter ‑ periplasmic binding protein |
| ? | AE015451 | 1025360 = | 46 (0.880) | intergenic (‑214/+15) | opdP/dppA‑II | glycine‑glutamate dipeptide porin/dipeptide ABC transporter ‑ periplasmic binding protein | |||||
| * | ? | AE015451 | = 1039478 | 61 (0.990) | 8 (0.140) | 7/312 | NT | 12.7% | intergenic (‑84/‑166) | PP_0897/PP_0899 | Fumarate hydratase, class I/putative Ferredoxin reductase |
| ? | AE015451 | = 1039462 | 55 (0.980) | intergenic (‑68/‑182) | PP_0897/PP_0899 | Fumarate hydratase, class I/putative Ferredoxin reductase | |||||
| * | ? | AE015451 | 1094944 = | 60 (0.970) | 6 (0.100) | 5/326 | NT | 9.2% | coding (1117/1494 nt) | rpoN | RNA polymerase sigma‑54 factor |
| ? | AE015451 | 1095025 = | 62 (1.060) | coding (1036/1494 nt) | rpoN | RNA polymerase sigma‑54 factor | |||||
| * | ? | AE015451 | = 1128406 | 53 (0.860) | 5 (0.090) | 4/322 | NT | 9.0% | coding (1145/2856 nt) | gcvP‑I | glycine dehydrogenase |
| ? | AE015451 | = 1128424 | 51 (0.880) | coding (1127/2856 nt) | gcvP‑I | glycine dehydrogenase | |||||
| * | ? | AE015451 | 1196535 = | 44 (0.710) | 4 (0.070) | 4/328 | NT | 8.1% | coding (596/1755 nt) | xcpQ | Type II secretion pathway protein XcpQ |
| ? | AE015451 | 1196595 = | 49 (0.830) | coding (656/1755 nt) | xcpQ | Type II secretion pathway protein XcpQ | |||||
| * | ? | AE015451 | 1217706 = | 75 (1.210) | 6 (0.100) | 4/324 | NT | 8.5% | coding (704/918 nt) | metR‑I | DNA‑binding transcriptional regulator, homocysteine‑binding |
| ? | AE015451 | 1217888 = | 59 (1.010) | coding (522/918 nt) | metR‑I | DNA‑binding transcriptional regulator, homocysteine‑binding | |||||
| * | ? | AE015451 | 1296784 = | NA (NA) | 19 (0.320) | 14/330 | NT | NA | intergenic (‑537/‑29) | nhaA‑I/PP_1133 | Na(+)/H(+) antiporter NhaA 1/transposase |
| ? | AE015451 | 1296822 = | NA (NA) | coding (10/1329 nt) | PP_1133 | transposase | |||||
| * | ? | AE015451 | 1369367 = | 61 (0.990) | 6 (0.100) | 6/322 | NT | 9.8% | coding (163/1719 nt) | PP_1195 | conserved exported protein of unknown function |
| ? | AE015451 | 1369415 = | 53 (0.920) | coding (211/1719 nt) | PP_1195 | conserved exported protein of unknown function | |||||
| * | ? | AE015451 | 1464187 = | 51 (0.820) | 4 (0.070) | 4/326 | NT | 8.4% | coding (1431/1440 nt) | algX | Alginate biosynthesis protein AlgX |
| ? | AE015451 | 1464210 = | 39 (0.670) | coding (1408/1440 nt) | algX | Alginate biosynthesis protein AlgX | |||||
| * | ? | AE015451 | 1464311 = | 53 (0.860) | 3 (0.050) | 3/328 | NT | 5.4% | coding (1307/1440 nt) | algX | Alginate biosynthesis protein AlgX |
| ? | AE015451 | 1464336 = | 54 (0.920) | coding (1282/1440 nt) | algX | Alginate biosynthesis protein AlgX | |||||
| * | ? | AE015451 | = 1672366 | 46 (0.740) | 6 (0.100) | 6/324 | NT | 12.6% | coding (523/1806 nt) | PP_1467 | NhaP‑type Na+(K+)/H+ antiporter |
| ? | AE015451 | = 1672526 | 40 (0.690) | coding (363/1806 nt) | PP_1467 | NhaP‑type Na+(K+)/H+ antiporter | |||||
| * | ? | AE015451 | 1678612 = | 76 (1.230) | 5 (0.090) | 4/326 | NT | 6.5% | intergenic (+94/+93) | PP_1473/PP_1474 | conserved protein of unknown function/conserved exported protein of unknown function |
| ? | AE015451 | 1678640 = | 72 (1.230) | intergenic (+122/+65) | PP_1473/PP_1474 | conserved protein of unknown function/conserved exported protein of unknown function | |||||
| * | ? | AE015451 | = 1716625 | 65 (1.050) | 7 (0.130) | 7/304 | NT | 11.3% | coding (573/621 nt) | PP_1512 | conserved protein of unknown function |
| ? | AE015451 | = 1716605 | 52 (0.950) | coding (593/621 nt) | PP_1512 | conserved protein of unknown function | |||||
| * | ? | AE015451 | 1737987 = | 70 (1.130) | 15 (0.270) | 15/310 | NT | 19.6% | coding (32/348 nt) | yffB | putative glutathione‑dependent thiol reductase |
| ? | AE015451 | = 1777401 | 60 (1.080) | intergenic (+135/+157) | PP_5476/PP_1585 | conserved protein of unknown function/putative Antidote protein | |||||
| * | ? | AE015451 | = 1933967 | 43 (0.700) | 4 (0.070) | 3/326 | NT | 8.9% | coding (724/828 nt) | minC | Probable septum site‑determining protein MinC |
| ? | AE015451 | = 1934030 | 41 (0.700) | coding (661/828 nt) | minC | Probable septum site‑determining protein MinC | |||||
| * | ? | AE015451 | = 2051064 | 53 (0.860) | 5 (0.090) | 5/326 | NT | 8.9% | intergenic (‑62/+24) | PP_1825/PP_1826 | conserved exported protein of unknown function/Hydrolase, isochorismatase family |
| ? | AE015451 | = 2051065 | 52 (0.890) | intergenic (‑63/+23) | PP_1825/PP_1826 | conserved exported protein of unknown function/Hydrolase, isochorismatase family | |||||
| * | ? | AE015451 | = 2085466 | 50 (0.810) | 4 (0.070) | 3/324 | NT | 8.1% | intergenic (+175/‑420) | PP_1864/PP_1865 | conserved protein of unknown function/transposase |
| ? | AE015451 | 2087373 = | 44 (0.760) | intergenic (+186/+732) | PP_1865/aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase | |||||
| * | ? | AE015451 | = 2097456 | 54 (0.870) | 5 (0.090) | 5/324 | NT | 10.2% | coding (403/489 nt) | gpx | Hydroperoxy fatty acid reductase gpx1 |
| ? | AE015451 | = 2097554 | 37 (0.640) | coding (2336/2358 nt) | PP_1875 | Sensor histidine kinase/response regulator | |||||
| * | ? | AE015451 | = 2256197 | 46 (0.740) | 3 (0.050) | 3/324 | NT | 9.3% | intergenic (+257/‑447) | asd/PP_1990 | Aspartate‑semialdehyde dehydrogenase/transposase |
| ? | AE015451 | 2258124 = | 15 (0.260) | intergenic (+179/‑213) | PP_1990/asd | transposase/aspartate‑semialdehyde dehydrogenase | |||||
| * | ? | AE015451 | = 2256197 | 46 (0.740) | 7 (0.120) | 7/324 | NT | 13.8% | intergenic (+257/‑447) | asd/PP_1990 | Aspartate‑semialdehyde dehydrogenase/transposase |
| ? | AE015451 | = 4908026 | 44 (0.760) | intergenic (‑2/‑280) | PP_4317/PP_4318 | conserved protein of unknown function/transposase | |||||
| * | ? | AE015451 | 2258126 = | 17 (0.270) | 6 (0.100) | 5/324 | NT | 20.3% | intergenic (+181/‑211) | PP_1990/asd | transposase/aspartate‑semialdehyde dehydrogenase |
| ? | AE015451 | 4022806 = | 31 (0.530) | intergenic (‑501/+167) | PP_3547/emrB | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit | |||||
| * | ? | AE015451 | = 2301454 | 46 (0.740) | 4 (0.070) | 3/340 | NT | 8.1% | intergenic (‑98/‑233) | sbcD/PP_5497 | Exonuclease SbcD/conserved protein of unknown function with rhs repeat‑associated core domain |
| ? | AE015451 | 5545321 = | NA (NA) | intergenic (‑461/+416) | rpsF/rlmB | 30S ribosomal protein S6/23S rRNA (guanosine‑2'‑O‑)‑methyltransferase RlmB | |||||
| * | ? | AE015451 | 2309090 = | 57 (0.920) | 5 (0.090) | 5/326 | NT | 8.1% | coding (932/960 nt) | PP_2032 | putative ATPase |
| ? | AE015451 | 2309250 = | 59 (1.010) | coding (772/960 nt) | PP_2032 | putative ATPase | |||||
| * | ? | AE015451 | 2331342 = | 57 (0.920) | 3 (0.050) | 3/326 | NT | 5.6% | coding (1695/1776 nt) | PP_2048 | putative acyl‑CoA dehydrogenase |
| ? | AE015451 | 2331383 = | 48 (0.820) | coding (1736/1776 nt) | PP_2048 | putative acyl‑CoA dehydrogenase | |||||
| * | ? | AE015451 | = 2412887 | 48 (0.780) | 12 (0.210) | 9/324 | NT | 20.8% | intergenic (+151/‑270) | rlmM/PP_2114 | Ribosomal RNA large subunit methyltransferase M/transposase |
| ? | AE015451 | 2414813 = | 46 (0.790) | coding (11/198 nt) | PP_2115 | conserved protein of unknown function | |||||
| * | ? | AE015451 | = 2472115 | 51 (0.820) | 23 (0.390) | 17/330 | NT | 33.6% | intergenic (+19/+130) | PP_2166/PP_2167 | Anti‑anti‑sigma factor/putative PhoD‑like phosphatase |
| ? | AE015451 | 2472313 = | 42 (0.710) | coding (1783/1851 nt) | PP_2167 | putative PhoD‑like phosphatase | |||||
| * | ? | AE015451 | 2524484 = | 44 (0.710) | 3 (0.050) | 3/324 | NT | 7.7% | coding (1206/1686 nt) | PP_2213 | putative acyl‑CoA synthetase |
| ? | AE015451 | 2524563 = | 30 (0.510) | coding (1285/1686 nt) | PP_2213 | putative acyl‑CoA synthetase | |||||
| * | ? | AE015451 | = 2528999 | 50 (0.810) | 4 (0.070) | 4/324 | NT | 11.7% | intergenic (+126/‑281) | PP_2217/PP_2218 | enoyl‑CoA hydratase/transposase |
| ? | AE015451 | 2530760 = | 13 (0.220) | intergenic (+179/‑2) | PP_2218/PP_2219 | transposase/conserved protein of unknown function | |||||
| * | ? | AE015451 | 2568148 = | 53 (0.860) | 6 (0.100) | 5/338 | NT | 10.3% | coding (119/429 nt) | PP_2251 | conserved membrane protein of unknown function |
| ? | AE015451 | 2568169 = | 52 (0.860) | coding (140/429 nt) | PP_2251 | conserved membrane protein of unknown function | |||||
| * | ? | AE015451 | = 2612197 | 52 (0.840) | 3 (0.050) | 3/326 | NT | 5.3% | coding (1136/4710 nt) | PP_2287 | Phage internal core protein |
| ? | AE015451 | = 2612226 | 58 (0.990) | coding (1165/4710 nt) | PP_2287 | Phage internal core protein | |||||
| * | ? | AE015451 | = 2643724 | 56 (0.910) | 7 (0.120) | 6/330 | NT | 10.8% | intergenic (+30/‑219) | PP_2313/PP_2314 | conserved membrane protein of unknown function/conserved protein of unknown function |
| ? | AE015451 | = 2643759 | 62 (1.040) | intergenic (+65/‑184) | PP_2313/PP_2314 | conserved membrane protein of unknown function/conserved protein of unknown function | |||||
| * | ? | AE015451 | = 2718948 | 50 (0.810) | 3 (0.050) | 3/328 | NT | 6.3% | coding (75/585 nt) | nfuA | Fe/S biogenesis protein NfuA |
| ? | AE015451 | = 2719016 | 41 (0.700) | coding (143/585 nt) | nfuA | Fe/S biogenesis protein NfuA | |||||
| * | ? | AE015451 | = 2719525 | 57 (0.920) | 3 (0.050) | 3/330 | NT | 5.2% | intergenic (+67/‑130) | nfuA/PP_2379 | Fe/S biogenesis protein NfuA/putative cytochrome oxidase biogenesis protein |
| ? | AE015451 | = 2719534 | 55 (0.930) | intergenic (+76/‑121) | nfuA/PP_2379 | Fe/S biogenesis protein NfuA/putative cytochrome oxidase biogenesis protein | |||||
| * | ? | AE015451 | 2832682 = | 74 (1.200) | 7 (0.120) | 7/324 | NT | 9.0% | intergenic (‑30/+37) | PP_2485/PP_2486 | conserved protein of unknown function/NADH‑dependent flavin oxidoreductase, Oye family |
| ? | AE015451 | 2832710 = | 71 (1.220) | intergenic (‑58/+9) | PP_2485/PP_2486 | conserved protein of unknown function/NADH‑dependent flavin oxidoreductase, Oye family | |||||
| * | ? | AE015451 | 2927093 = | 49 (0.790) | 7 (0.120) | 5/326 | NT | 13.0% | coding (360/2472 nt) | PP_2565 | putative helicase, UvrD/REP family |
| ? | AE015451 | 2927180 = | 47 (0.800) | coding (447/2472 nt) | PP_2565 | putative helicase, UvrD/REP family | |||||
| * | ? | AE015451 | 3136368 = | 32 (0.520) | 3 (0.050) | 3/328 | NT | 7.9% | coding (1021/1335 nt) | PP_2752 | conserved exported protein of unknown function |
| ? | AE015451 | 3136456 = | 39 (0.660) | coding (1109/1335 nt) | PP_2752 | conserved exported protein of unknown function | |||||
| * | ? | AE015451 | 3194834 = | 36 (0.580) | 3 (0.050) | 3/330 | NT | 7.9% | coding (36/1332 nt) | PP_2802 | Amino acid permease family protein |
| ? | AE015451 | 3194851 = | 35 (0.590) | coding (19/1332 nt) | PP_2802 | Amino acid permease family protein | |||||
| * | ? | AE015451 | 3209796 = | 57 (0.920) | 4 (0.070) | 4/322 | NT | 7.5% | intergenic (+57/+60) | PP_2813/PP_2814 | BNR domain protein/conserved protein of unknown function |
| ? | AE015451 | 3209843 = | 45 (0.780) | intergenic (+104/+13) | PP_2813/PP_2814 | BNR domain protein/conserved protein of unknown function | |||||
| * | ? | AE015451 | = 3237184 | 38 (0.610) | 4 (0.070) | 4/330 | NT | 9.5% | coding (678/1035 nt) | PP_2835 | putative oxidoreductase |
| ? | AE015451 | = 3237241 | 40 (0.670) | coding (735/1035 nt) | PP_2835 | putative oxidoreductase | |||||
| * | ? | AE015451 | 3248931 = | 48 (0.780) | 4 (0.070) | 4/328 | NT | 8.4% | coding (551/1704 nt) | ureC | urease subunit alpha |
| ? | AE015451 | 3249025 = | 41 (0.700) | coding (645/1704 nt) | ureC | urease subunit alpha | |||||
| * | ? | AE015451 | = 3283058 | 67 (1.080) | 6 (0.100) | 6/326 | NT | 8.9% | coding (1167/1230 nt) | PP_2885 | putative Transporter |
| ? | AE015451 | = 3283150 | 59 (1.010) | coding (1075/1230 nt) | PP_2885 | putative Transporter | |||||
| * | ? | AE015451 | 3398276 = | 62 (1.000) | 4 (0.070) | 4/326 | NT | 6.0% | coding (757/819 nt) | PP_3002 | shikimate dehydrogenase‑related enzyme |
| ? | AE015451 | 3398411 = | 67 (1.140) | coding (69/438 nt) | aroQ‑III | 3‑dehydroquinate dehydratase 3, type II | |||||
| * | ? | AE015451 | 3511702 = | 55 (0.890) | 3 (0.050) | 3/328 | NT | 5.5% | coding (370/4158 nt) | PP_3108 | Rhs‑related protein |
| ? | AE015451 | 3511783 = | 50 (0.850) | coding (451/4158 nt) | PP_3108 | Rhs‑related protein | |||||
| * | ? | AE015451 | 3585335 = | 61 (0.990) | 3 (0.050) | 3/326 | NT | 5.4% | coding (348/762 nt) | benD | 1,6‑dihydroxycyclohexa‑2,4‑diene‑1‑carboxylate dehydrogenase |
| ? | AE015451 | 3585374 = | 47 (0.800) | coding (387/762 nt) | benD | 1,6‑dihydroxycyclohexa‑2,4‑diene‑1‑carboxylate dehydrogenase | |||||
| * | ? | AE015451 | 3622662 = | 57 (0.920) | 5 (0.090) | 4/326 | NT | 7.9% | coding (60/459 nt) | PP_3193 | conserved protein of unknown function |
| ? | AE015451 | 3622748 = | 63 (1.070) | coding (1305/1344 nt) | PP_3194 | conserved protein of unknown function | |||||
| * | ? | AE015451 | = 3655469 | 45 (0.730) | 6 (0.100) | 6/324 | NT | 11.0% | coding (924/1620 nt) | PP_3220 | ABC transporter, ATP‑binding protein |
| ? | AE015451 | = 3655515 | 55 (0.940) | coding (878/1620 nt) | PP_3220 | ABC transporter, ATP‑binding protein | |||||
| * | ? | AE015451 | 3662077 = | 56 (0.910) | 3 (0.050) | 3/324 | NT | 5.1% | coding (757/1143 nt) | PP_3226 | Acyl‑CoA dehydrogenase‑related protein |
| ? | AE015451 | 3662181 = | 58 (1.000) | coding (653/1143 nt) | PP_3226 | Acyl‑CoA dehydrogenase‑related protein | |||||
| * | ? | AE015451 | = 3674369 | 76 (1.230) | 10 (0.170) | 6/326 | NT | 12.2% | coding (187/573 nt) | PP_3238 | putative Transcriptional regulator PyrR |
| ? | AE015451 | = 3674401 | 72 (1.230) | coding (155/573 nt) | PP_3238 | putative Transcriptional regulator PyrR | |||||
| * | ? | AE015451 | = 3710882 | 37 (0.600) | 5 (0.080) | 5/328 | NT | 12.8% | coding (64/534 nt) | paaD | putative subunit of phenylacetate degradation enzyme |
| ? | AE015451 | = 3710901 | 33 (0.560) | coding (45/534 nt) | paaD | putative subunit of phenylacetate degradation enzyme | |||||
| * | ? | AE015451 | 3812255 = | 53 (0.860) | 3 (0.050) | 3/326 | NT | 6.6% | coding (579/1185 nt) | PP_3368 | Major facilitator family transporter |
| ? | AE015451 | 3812335 = | 34 (0.580) | coding (659/1185 nt) | PP_3368 | Major facilitator family transporter | |||||
| * | ? | AE015451 | = 3875618 | 46 (0.740) | 5 (0.090) | 4/326 | NT | 10.5% | coding (110/1212 nt) | xcpS | Type II secretion pathway protein XcpS |
| ? | AE015451 | = 3875776 | 42 (0.720) | coding (268/1212 nt) | xcpS | Type II secretion pathway protein XcpS | |||||
| * | ? | AE015451 | 3920883 = | 56 (0.910) | 3 (0.050) | 3/324 | NT | 5.4% | coding (883/1689 nt) | acs | Butyrate‑‑CoA ligase |
| ? | AE015451 | 3920913 = | 52 (0.890) | coding (853/1689 nt) | acs | Butyrate‑‑CoA ligase | |||||
| * | ? | AE015451 | 3953277 = | 62 (1.000) | 4 (0.070) | 4/330 | NT | 6.2% | coding (1246/1977 nt) | PP_5606 | conserved exported protein of unknown function with YVTN beta‑propeller repeat |
| ? | AE015451 | 3953322 = | 62 (1.040) | coding (1201/1977 nt) | PP_5606 | conserved exported protein of unknown function with YVTN beta‑propeller repeat | |||||
| * | ? | AE015451 | = 3954552 | 40 (0.650) | 4 (0.070) | 4/332 | NT | 8.8% | coding (5833/5844 nt) | mnxG | manganese‑oxidizing multicopper oxidase |
| ? | AE015451 | = 3954560 | 44 (0.740) | coding (5825/5844 nt) | mnxG | manganese‑oxidizing multicopper oxidase | |||||
| * | ? | AE015451 | 3970595 = | NA (NA) | 5 (0.090) | 5/312 | NT | NA | coding (514/1536 nt) | PP_3501 | transposase |
| ? | AE015451 | 3970611 = | NA (NA) | coding (530/1536 nt) | PP_3501 | transposase | |||||
| * | ? | AE015451 | 3996351 = | 52 (0.840) | 4 (0.070) | 4/332 | NT | 7.9% | intergenic (+29/+16) | PP_3523/PP_3524 | conserved protein of unknown function/conserved protein of unknown function |
| ? | AE015451 | 3996409 = | 43 (0.720) | coding (291/333 nt) | PP_3524 | conserved protein of unknown function | |||||
| * | ? | AE015451 | = 4022317 | 33 (0.530) | 13 (0.220) | 12/324 | NT | 29.2% | intergenic (‑12/+656) | PP_3547/emrB | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit |
| ? | AE015451 | 4022818 = | 32 (0.550) | intergenic (‑513/+155) | PP_3547/emrB | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit | |||||
| * | ? | AE015451 | = 4022445 | 31 (0.500) | 4 (0.070) | 4/324 | NT | 12.5% | intergenic (‑140/+528) | PP_3547/emrB | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit |
| ? | AE015451 | = 4022451 | 27 (0.460) | intergenic (‑146/+522) | PP_3547/emrB | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit | |||||
| * | ? | AE015451 | = 4042896 | 60 (0.970) | 4 (0.070) | 4/334 | NT | 6.3% | coding (848/978 nt) | PP_3564 | Transcriptional regulator, AraC family |
| ? | AE015451 | = 4042909 | 60 (1.000) | coding (835/978 nt) | PP_3564 | Transcriptional regulator, AraC family | |||||
| * | ? | AE015451 | = 4062647 | 52 (0.840) | 3 (0.050) | 3/322 | NT | 5.9% | coding (1692/2088 nt) | PP_3581 | conserved membrane protein of unknown function |
| ? | AE015451 | = 4062757 | 47 (0.810) | coding (1582/2088 nt) | PP_3581 | conserved membrane protein of unknown function | |||||
| * | ? | AE015451 | = 4172419 | 77 (1.240) | 6 (0.100) | 6/326 | NT | 7.5% | coding (53/825 nt) | PP_3671 | Oxidoreductase, aldo/keto reductase family |
| ? | AE015451 | = 4172448 | 76 (1.300) | coding (82/825 nt) | PP_3671 | Oxidoreductase, aldo/keto reductase family | |||||
| * | ? | AE015451 | = 4192478 | 71 (1.150) | 5 (0.090) | 5/304 | NT | 7.4% | intergenic (+84/‑565) | PP_5613/PP_5614 | protein of unknown function/protein of unknown function |
| ? | AE015451 | = 4192458 | 63 (1.150) | intergenic (+64/‑585) | PP_5613/PP_5614 | protein of unknown function/protein of unknown function | |||||
| * | ? | AE015451 | 4256735 = | 37 (0.600) | 5 (0.080) | 5/328 | NT | 12.5% | coding (172/783 nt) | PP_3729 | Periplasmic amino acid‑binding protein‑related protein |
| ? | AE015451 | 4256752 = | 35 (0.590) | coding (155/783 nt) | PP_3729 | Periplasmic amino acid‑binding protein‑related protein | |||||
| * | ? | AE015451 | 4275476 = | 59 (0.950) | 7 (0.120) | 7/312 | NT | 12.2% | coding (1433/1500 nt) | glcD | glycolate oxidase, putative FAD‑linked subunit |
| ? | AE015451 | 4275492 = | 47 (0.840) | coding (1449/1500 nt) | glcD | glycolate oxidase, putative FAD‑linked subunit | |||||
| * | ? | AE015451 | 4358973 = | 41 (0.660) | 5 (0.090) | 5/326 | NT | 11.0% | coding (983/1446 nt) | PP_3834 | conserved protein of unknown function |
| ? | AE015451 | 4359108 = | 42 (0.720) | coding (848/1446 nt) | PP_3834 | conserved protein of unknown function | |||||
| * | ? | AE015451 | 4399867 = | 78 (1.260) | 7 (0.120) | 6/328 | NT | 9.5% | coding (23/972 nt) | PP_3878 | putative Phage minor capsid protein C |
| ? | AE015451 | 4399923 = | 59 (1.000) | coding (1235/1272 nt) | PP_3879 | Phage portal protein, HK97 family | |||||
| * | ? | AE015451 | = 4545515 | 48 (0.780) | 5 (0.090) | 5/322 | NT | 10.5% | coding (291/1284 nt) | hyuC | N‑carbamoyl‑beta‑alanine amidohydrolase/allantoine amidohydrolase 2 |
| ? | AE015451 | = 4545544 | 40 (0.690) | coding (262/1284 nt) | hyuC | N‑carbamoyl‑beta‑alanine amidohydrolase/allantoine amidohydrolase 2 | |||||
| * | ? | AE015451 | = 4568152 | 55 (0.890) | 3 (0.050) | 3/316 | NT | 6.2% | coding (82/2070 nt) | malQ | 4‑alpha‑glucanotransferase |
| ? | AE015451 | = 4568524 | 40 (0.700) | coding (454/2070 nt) | malQ | 4‑alpha‑glucanotransferase | |||||
| * | ? | AE015451 | = 4571500 | 54 (0.870) | 5 (0.080) | 5/332 | NT | 8.5% | coding (1364/2775 nt) | treY | maltooligosyl trehalose synthase |
| ? | AE015451 | = 4571540 | 56 (0.940) | coding (1404/2775 nt) | treY | maltooligosyl trehalose synthase | |||||
| * | ? | AE015451 | = 4585388 | 44 (0.710) | 4 (0.070) | 4/328 | NT | 8.5% | coding (196/1986 nt) | glgE | Alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase |
| ? | AE015451 | = 4585403 | 44 (0.750) | coding (181/1986 nt) | glgE | Alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase | |||||
| * | ? | AE015451 | 4694645 = | 73 (1.180) | 4 (0.070) | 4/328 | NT | 5.7% | coding (2520/2931 nt) | PP_4154 | putative class 3 aminotransferase |
| ? | AE015451 | 4694673 = | 62 (1.050) | coding (2548/2931 nt) | PP_4154 | putative class 3 aminotransferase | |||||
| * | ? | AE015451 | 4701761 = | 57 (0.920) | 4 (0.070) | 4/324 | NT | 7.2% | coding (1699/2055 nt) | kdpB | K+ transporting ATPase, KdpB subunit |
| ? | AE015451 | 4701808 = | 50 (0.860) | coding (1652/2055 nt) | kdpB | K+ transporting ATPase, KdpB subunit | |||||
| * | ? | AE015451 | = 4703829 | 47 (0.760) | 5 (0.080) | 5/330 | NT | 9.8% | coding (1335/1695 nt) | kdpA | potassium‑transporting ATPase A chain |
| ? | AE015451 | = 4703830 | 47 (0.790) | coding (1334/1695 nt) | kdpA | potassium‑transporting ATPase A chain | |||||
| * | ? | AE015451 | = 4792835 | 67 (1.080) | 4 (0.070) | 4/330 | NT | 5.9% | coding (1005/6525 nt) | pvdI | non‑ribosomal peptide synthetase (subunit of ferribactin synthase) |
| ? | AE015451 | = 4792856 | 63 (1.060) | coding (984/6525 nt) | pvdI | non‑ribosomal peptide synthetase (subunit of ferribactin synthase) | |||||
| * | ? | AE015451 | 4808174 = | 3 (0.050) | 14 (0.280) | 8/274 | NT | 49.7% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | = 5988935 | 26 (0.530) | intergenic (+229/‑317) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | = 4808179 | 3 (0.050) | 19 (0.330) | 13/320 | NT | 48.8% | intergenic (‑288/‑267) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | 5988765 = | 37 (0.640) | intergenic (+59/‑487) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | = 4845609 | 42 (0.680) | 5 (0.080) | 5/328 | NT | 11.5% | coding (359/2475 nt) | PP_4261 | cation‑transporting P‑type ATPase |
| ? | AE015451 | 4846279 = | 37 (0.630) | coding (1029/2475 nt) | PP_4261 | cation‑transporting P‑type ATPase | |||||
| * | ? | AE015451 | = 4863737 | 46 (0.740) | 4 (0.070) | 4/316 | NT | 7.8% | coding (2136/3489 nt) | smc | Chromosome partition protein Smc |
| ? | AE015451 | = 4864288 | 52 (0.920) | coding (1585/3489 nt) | smc | Chromosome partition protein Smc | |||||
| * | ? | AE015451 | = 4911042 | 64 (1.030) | 4 (0.070) | 4/326 | NT | 5.8% | coding (670/1197 nt) | cycH | cytochrome c‑type biogenesis protein |
| ? | AE015451 | = 4911129 | 70 (1.190) | coding (583/1197 nt) | cycH | cytochrome c‑type biogenesis protein | |||||
| * | ? | AE015451 | = 4913718 | 38 (0.610) | 4 (0.070) | 4/324 | NT | 9.3% | coding (981/1989 nt) | ccmF | holocytochrome c synthetase |
| ? | AE015451 | = 4913758 | 42 (0.720) | coding (941/1989 nt) | ccmF | holocytochrome c synthetase | |||||
| * | ? | AE015451 | = 4945198 | 49 (0.790) | 4 (0.070) | 4/334 | NT | 8.0% | intergenic (+558/+240) | PP_5673/flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein |
| ? | AE015451 | 4945577 = | 45 (0.750) | coding (1004/1143 nt) | flhB | flagellin export apparatus, substrate specificity protein | |||||
| * | ? | AE015451 | = 4945203 | 49 (0.790) | 12 (0.200) | 12/326 | NT | 21.3% | intergenic (+563/+235) | PP_5673/flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein |
| ? | AE015451 | 4945621 = | 42 (0.720) | coding (960/1143 nt) | flhB | flagellin export apparatus, substrate specificity protein | |||||
| * | ? | AE015451 | = 4945209 | 48 (0.780) | 15 (0.260) | 14/326 | NT | 24.9% | intergenic (+569/+229) | PP_5673/flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein |
| ? | AE015451 | 4945455 = | 45 (0.770) | coding (1126/1143 nt) | flhB | flagellin export apparatus, substrate specificity protein | |||||
| * | ? | AE015451 | 5020424 = | 92 (1.490) | 5 (0.080) | 5/328 | NT | 5.7% | coding (111/468 nt) | PP_4424 | Uncharacterized HTH‑type transcriptional regulator y4tD |
| ? | AE015451 | 5020446 = | 79 (1.340) | coding (133/468 nt) | PP_4424 | Uncharacterized HTH‑type transcriptional regulator y4tD | |||||
| * | ? | AE015451 | = 5034489 | 0 (0.000) | 8 (0.140) | 6/328 | NT | 100% | coding (529/1536 nt) | PP_4439 | transposase |
| ? | AE015451 | = 5037421 | NA (NA) | coding (513/1536 nt) | PP_4443 | transposase | |||||
| * | ? | AE015451 | 5036742 = | NA (NA) | 3 (0.050) | 3/326 | NT | NA | coding (233/336 nt) | PP_4442 | transposase |
| ? | AE015451 | 5036808 = | NA (NA) | coding (299/336 nt) | PP_4442 | transposase | |||||
| * | ? | AE015451 | = 5170114 | 52 (0.840) | 4 (0.070) | 4/326 | NT | 6.3% | coding (343/1308 nt) | PP_4548 | putative Oxidoreductase |
| ? | AE015451 | = 5170444 | 70 (1.190) | coding (673/1308 nt) | PP_4548 | putative Oxidoreductase | |||||
| * | ? | AE015451 | = 5325153 | 54 (0.870) | 6 (0.110) | 6/316 | NT | 10.8% | coding (66/279 nt) | PP_4685 | conserved protein of unknown function |
| ? | AE015451 | = 5325139 | 50 (0.880) | coding (52/279 nt) | PP_4685 | conserved protein of unknown function | |||||
| * | ? | AE015451 | = 5363484 | 71 (1.150) | 5 (0.080) | 5/328 | NT | 7.8% | coding (282/1341 nt) | glmM | Phosphoglucosamine mutase |
| ? | AE015451 | = 5363528 | 51 (0.860) | coding (238/1341 nt) | glmM | Phosphoglucosamine mutase | |||||
| * | ? | AE015451 | = 5384862 | 64 (1.030) | 6 (0.100) | 6/320 | NT | 9.3% | coding (1326/1671 nt) | lldP | L‑lactate permease |
| ? | AE015451 | = 5384850 | 58 (1.010) | coding (1314/1671 nt) | lldP | L‑lactate permease | |||||
| * | ? | AE015451 | 5388868 = | 57 (0.920) | 3 (0.050) | 3/328 | NT | 5.4% | coding (2378/2811 nt) | dld2 | D‑lactate dehydrogenase |
| ? | AE015451 | 5388892 = | 51 (0.860) | coding (2402/2811 nt) | dld2 | D‑lactate dehydrogenase | |||||
| * | ? | AE015451 | = 5439097 | 48 (0.780) | 3 (0.050) | 3/326 | NT | 7.8% | coding (259/633 nt) | rluE | 23S rRNA pseudouridine 2457 synthase |
| ? | AE015451 | = 5439256 | 25 (0.430) | coding (100/633 nt) | rluE | 23S rRNA pseudouridine 2457 synthase | |||||
| * | ? | AE015451 | 5455391 = | 46 (0.740) | 3 (0.050) | 3/328 | NT | 6.1% | coding (202/762 nt) | PP_4792 | conserved exported protein of unknown function |
| ? | AE015451 | 5455507 = | 48 (0.810) | coding (86/762 nt) | PP_4792 | conserved exported protein of unknown function | |||||
| * | ? | AE015451 | = 5509910 | 47 (0.760) | 11 (0.200) | 11/304 | NT | 20.8% | coding (109/1488 nt) | urtB | putative Urea ABC transporter |
| ? | AE015451 | = 5509890 | 42 (0.770) | coding (89/1488 nt) | urtB | putative Urea ABC transporter | |||||
| * | ? | AE015451 | 5540355 = | 81 (1.310) | 5 (0.080) | 5/328 | NT | 6.4% | coding (631/2355 nt) | ygiQ | putative enzyme of unknown function |
| ? | AE015451 | 5540477 = | 69 (1.170) | coding (509/2355 nt) | ygiQ | putative enzyme of unknown function | |||||
| * | ? | AE015451 | 5545321 = | NA (NA) | 7 (0.110) | 7/340 | NT | 9.6% | intergenic (‑461/+416) | rpsF/rlmB | 30S ribosomal protein S6/23S rRNA (guanosine‑2'‑O‑)‑methyltransferase RlmB |
| ? | AE015451 | = 5621245 | 67 (1.080) | coding (19/774 nt) | PP_4939 | conserved protein of unknown function | |||||
| * | ? | AE015451 | = 5590527 | 60 (0.970) | 4 (0.070) | 4/326 | NT | 6.5% | coding (197/801 nt) | pde | 3',5'‑cyclic‑nucleotide phosphodiesterase |
| ? | AE015451 | = 5590530 | 59 (1.010) | coding (194/801 nt) | pde | 3',5'‑cyclic‑nucleotide phosphodiesterase | |||||
| * | ? | AE015451 | 5684488 = | 53 (0.860) | 3 (0.050) | 3/328 | NT | 5.4% | coding (2405/4941 nt) | PP_4988 | signal transduction histidine kinase CheA/CheY‑like receiver |
| ? | AE015451 | 5684611 = | 55 (0.930) | coding (2282/4941 nt) | PP_4988 | signal transduction histidine kinase CheA/CheY‑like receiver | |||||
| * | ? | AE015451 | = 5725645 | 63 (1.020) | 4 (0.070) | 4/334 | NT | 6.0% | coding (1321/2574 nt) | opgH | Glucans biosynthesis glucosyltransferase H |
| ? | AE015451 | = 5725658 | 64 (1.070) | coding (1308/2574 nt) | opgH | Glucans biosynthesis glucosyltransferase H | |||||
| * | ? | AE015451 | = 5817718 | 53 (0.860) | 4 (0.070) | 4/324 | NT | 7.2% | coding (236/1011 nt) | pilT | twitching motility protein |
| ? | AE015451 | = 5817756 | 53 (0.910) | coding (198/1011 nt) | pilT | twitching motility protein | |||||
| * | ? | AE015451 | = 5856275 | 62 (1.000) | 5 (0.090) | 4/326 | NT | 7.7% | coding (202/1392 nt) | PP_5133 | conserved membrane protein of unknown function |
| ? | AE015451 | = 5856285 | 61 (1.040) | coding (212/1392 nt) | PP_5133 | conserved membrane protein of unknown function | |||||
| * | ? | AE015451 | = 5960132 | 67 (1.080) | 5 (0.090) | 5/316 | NT | 7.5% | coding (172/225 nt) | PP_5224 | conserved protein of unknown function |
| ? | AE015451 | = 5960118 | 62 (1.090) | coding (186/225 nt) | PP_5224 | conserved protein of unknown function | |||||
| * | ? | AE015451 | = 5988668 | 45 (0.730) | 6 (0.100) | 6/330 | NT | 12.7% | coding (1750/1788 nt) | kefB‑III | glutathione‑regulated potassium/H+ antiporter |
| ? | AE015451 | = 5988758 | 39 (0.660) | intergenic (+52/‑494) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | = 5988668 | 45 (0.730) | 16 (0.270) | 14/330 | NT | 30.7% | coding (1750/1788 nt) | kefB‑III | glutathione‑regulated potassium/H+ antiporter |
| ? | AE015451 | 5988956 = | 29 (0.490) | intergenic (+250/‑296) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | = 5988757 | 39 (0.630) | 8 (0.140) | 7/328 | NT | 18.8% | intergenic (+51/‑495) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| ? | AE015451 | 5988979 = | 32 (0.540) | intergenic (+273/‑273) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | = 5988771 | 39 (0.630) | 16 (0.270) | 14/328 | NT | 31.9% | intergenic (+65/‑481) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| ? | AE015451 | 5988963 = | 31 (0.530) | intergenic (+257/‑289) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | = 6002217 | 63 (1.020) | 8 (0.130) | 7/338 | NT | 11.1% | coding (84/1299 nt) | amaA | L‑pipecolate oxidase |
| ? | AE015451 | = 6002230 | 66 (1.090) | coding (71/1299 nt) | amaA | L‑pipecolate oxidase | |||||
| * | ? | AE015451 | = 6017051 | 60 (0.970) | 6 (0.100) | 6/328 | NT | 9.4% | coding (283/423 nt) | PP_5267 | putative cytochrome c5 |
| ? | AE015451 | = 6017084 | 59 (1.000) | coding (250/423 nt) | PP_5267 | putative cytochrome c5 | |||||
| * | ? | AE015451 | 6032294 = | 54 (0.870) | 7 (0.120) | 6/322 | NT | 12.7% | coding (1148/1590 nt) | dppA‑IV | periplasmic dipeptide transport protein |
| ? | AE015451 | 6032394 = | 46 (0.790) | coding (1248/1590 nt) | dppA‑IV | periplasmic dipeptide transport protein | |||||
| * | ? | AE015451 | = 6130112 | 70 (1.130) | 4 (0.070) | 4/326 | NT | 5.6% | coding (321/783 nt) | PP_5378 | putative metal‑binding protein |
| ? | AE015451 | = 6130113 | 68 (1.160) | coding (320/783 nt) | PP_5378 | putative metal‑binding protein | |||||