mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 195,505 | C→G | 27.9% | A337A (GCC→GCG) | PP_0168 → | putative surface adhesion protein |
| RA | 195,559 | C→A | 51.3% | T355T (ACC→ACA) | PP_0168 → | putative surface adhesion protein |
| RA | 195,589 | T→C | 14.4% | N365N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,634 | C→T | 40.2% | T380T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 195,826 | C→T | 12.5% | G444G (GGC→GGT) | PP_0168 → | putative surface adhesion protein |
| RA | 195,852 | G→A | 9.4% | S453N (AGC→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,859 | T→C | 9.3% | T455T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,929 | A→G | 10.5% | T479A (ACC→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,132 | G→C | 19.7% | T546T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,159 | G→A | 22.6% | T555T (ACG→ACA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,189 | C→T | 7.5% | N565N (AAC→AAT) | PP_0168 → | putative surface adhesion protein |
| RA | 196,195 | G→C | 15.3% | T567T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,234 | T→C | 11.0% | T580T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,327 | A→C | 15.3% | T611T (ACA→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,351 | C→G | 17.5% | T619T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 196,366 | C→G | 8.7% | A624A (GCC→GCG) | PP_0168 → | putative surface adhesion protein |
| RA | 196,390 | T→C | 18.4% | D632D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,432 | T→C | 21.0% | T646T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,438 | T→C | 16.0% | S648S (AGT→AGC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,459 | C→A | 15.5% | T655T (ACC→ACA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,489 | T→C | 12.9% | N665N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,495 | G→C | 27.4% | T667T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,579 | G→A | 35.3% | V695V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,795 | G→C | 14.1% | T767T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,879 | G→A | 36.8% | V795V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,924 | G→A | 11.5% | V810V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,927 | A→C | 15.1% | T811T (ACA→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,972 | G→A | 11.2% | K826K (AAG→AAA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,990 | T→C | 10.9% | D832D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,032 | C→T | 8.6% | T846T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 197,089 | T→C | 28.5% | N865N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,179 | A→G | 10.9% | V895V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,185 | C→T | 6.0% | T897T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 197,224 | A→G | 18.3% | V910V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,227 | C→A | 14.8% | T911T (ACC→ACA) | PP_0168 → | putative surface adhesion protein |
| RA | 197,496 | T→C | 15.4% | I1001T (ATC→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,551 | C→G | 10.9% | T1019T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,590 | T→C | 13.6% | D1032D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,632 | T→C | 36.3% | T1046T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 200,113 | T→C | 12.6% | N1873N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 200,401 | C→T | 13.0% | N1969N (AAC→AAT) | PP_0168 → | putative surface adhesion protein |
| RA | 201,859 | G→C | 15.0% | A2455A (GCG→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 202,276 | G→A | 8.0% | E2594E (GAG→GAA) | PP_0168 → | putative surface adhesion protein |
| RA | 202,279 | G→C | 10.4% | V2595V (GTG→GTC) | PP_0168 → | putative surface adhesion protein |
| RA | 202,321 | T→C | 8.8% | G2609G (GGT→GGC) | PP_0168 → | putative surface adhesion protein |
| RA | 202,342 | C→G | 8.9% | T2616T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 203,547 | A→C | 9.3% | E3018A (GAG→GCG) | PP_0168 → | putative surface adhesion protein |
| RA | 205,801 | C→G | 10.2% | V3769V (GTC→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 206,311 | G→C | 9.2% | V3939V (GTG→GTC) | PP_0168 → | putative surface adhesion protein |
| RA | 210,319 | C→G | 11.2% | T5275T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 210,337 | C→T | 9.8% | G5281G (GGC→GGT) | PP_0168 → | putative surface adhesion protein |
| RA | 210,465 | G→C | 14.0% | S5324T (AGC→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 212,134 | T→C | 10.5% | D5880D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 212,155 | T→C | 12.1% | G5887G (GGT→GGC) | PP_0168 → | putative surface adhesion protein |
| RA | 278,742:1 | +A | 100% | intergenic (‑237/+77) | PP_0224 ← / ← sctC | Monooxygenase, DszC family/sulfur compound ABC transporter ‑ ATP‑binding subunit |
| RA | 307,865:1 | +C | 100% | intergenic (+880/‑989) | hslO → / → PP_0254 | 33 kDa chaperonin/conserved protein of unknown function |
| RA | 311,371 | Δ1 bp | 7.4% | coding (1005/2346 nt) | PP_0256 ← | putative oxidoreductase |
| RA | 336,124:1 | +T | 100% | coding (209/237 nt) | PP_0278 → | conserved protein of unknown function |
| RA | 353,067 | A→G | 100% | intergenic (+34/+84) | hisF → / ← cbcV | Imidazole glycerol phosphate synthase subunit HisF/choline / betaine / carnitine ABC transporter ‑ ATP binding subunit |
| RA | 499,203 | A→G | 100% | intergenic (+47/‑249) | uhpA → / → PP_0411 | DNA‑binding response regulator UhpA/Polyamine ABC transporter, ATP‑binding protein |
| RA | 699,722 | A→G | 56.8% | intergenic (+115/‑129) | PP_t06 → / → PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| RA | 1,070,246:1 | +GA | 100% | intergenic (+46/+96) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger related‑protein |
| RA | 1,126,645:1 | +C | 100% | intergenic (‑99/+50) | tdcG‑II ← / ← gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| RA | 1,327,121 | C→T | 46.8% | intergenic (+97/‑196) | PP_16SE → / → PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| JC | 1,370,776 | Δ9 bp | 83.0% | coding (1572‑1580/1719 nt) | PP_1195 → | conserved exported protein of unknown function |
| RA | 1,419,548:1 | +C | 100% | intergenic (‑37/+99) | PP_1242 ← / ← PP_1244 | conserved protein of unknown function/conserved protein of unknown function |
| RA | 1,499,480 | 2 bp→AC | 100% | intergenic (+57/‑106) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| RA | 1,499,498 | 1 bp→CG | 100% | intergenic (+75/‑89) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| RA | 1,499,506:1 | +C | 100% | intergenic (+83/‑81) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| JC | 1,531,732 | Δ107 bp | 32.7% | coding (38‑144/630 nt) | PP_1344 ← | conserved protein of unknown function |
| JC | 1,780,067 | Δ62 bp | 18.2% | intergenic (+26/+19) | PP_1587 → / ← dapC | NhaP‑type Na+/H+ and K+/H+ antiporters/N‑succinyl‑L,L‑diaminopimelate aminotransferase alternative |
| RA | 1,932,638:1 | +C | 100% | intergenic (‑105/+45) | rluA ← / ← minE | 23S rRNA (746) and tRNA (32) pseudouridine synthase/Cell division topological specificity factor |
| JC | 2,071,180 | 37 bp→37 bp | 14.4% | intergenic (+132/+59) | PP_1846 → / ← PP_1847 | Group II intron‑encoding maturase/putative TonB‑dependent ferric siderophore receptor |
| RA | 2,414,801 | C→G | 22.8% | intergenic (+343/‑2) | PP_2114 → / → PP_2115 | transposase/conserved protein of unknown function |
| RA | 2,414,802 | C→G | 22.8% | intergenic (+344/‑1) | PP_2114 → / → PP_2115 | transposase/conserved protein of unknown function |
| RA | 2,550,125 | G→A | 48.5% | noncoding (1436/1522 nt) | PP_16SF → | 16S ribosomal RNA |
| RA | 3,845,703:1 | +G | 100% | intergenic (‑70/+28) | PP_3394 ← / ← PP_3395 | putative 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/Transcriptional regulator, LysR family |
| RA | 3,914,856 | T→G | 8.6% | intergenic (‑70/‑176) | PP_3454 ← / → PP_3455 | putative transcriptional regulatory protein/Multidrug efflux RND membrane fusion protein |
| RA | 3,951,159 | T→C | 100% | intergenic (‑123/+72) | PP_3486 ← / ← PP_3487 | putative cytochrome c/conserved exported protein of unknown function |
| RA | 3,951,161 | A→T | 100% | intergenic (‑125/+70) | PP_3486 ← / ← PP_3487 | putative cytochrome c/conserved exported protein of unknown function |
| RA | 4,348,705 | A→G | 39.7% | intergenic (‑70/+404) | PP_3820 ← / ← galU | Group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| RA | 4,518,633 | C→T | 79.3% | G296D (GGC→GAC) | clpA ← | ATP‑dependent serine protease |
| RA | 4,586,030 | 2 bp→TC | 100% | intergenic (+113/+101) | PP_4061 → / ← PP_4063 | conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase |
| RA | 4,586,033:1 | +G | 100% | intergenic (+116/+99) | PP_4061 → / ← PP_4063 | conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase |
| RA | 4,586,056:1 | +C | 100% | intergenic (+139/+76) | PP_4061 → / ← PP_4063 | conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase |
| RA | 4,635,590 | T→C | 9.8% | K56E (AAA→GAA) | uvrY ← | two‑componenent system BarA/UvrY ‑ regulatory subunit |
| RA | 4,740,805 | Δ1 bp | 100% | intergenic (+42/+711) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,816 | T→G | 100% | intergenic (+53/+700) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,819 | 2 bp→CT | 100% | intergenic (+56/+696) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,229 | A→C | 100% | intergenic (+466/+287) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,231 | C→G | 80.0% | intergenic (+468/+285) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,232 | C→T | 20.0% | intergenic (+469/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,234 | C→T | 80.0% | intergenic (+471/+282) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,235 | C→T | 20.0% | intergenic (+472/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,236 | G→T | 80.0% | intergenic (+473/+280) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,237 | C→G | 80.0% | intergenic (+474/+279) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,238 | C→G | 20.0% | intergenic (+475/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,239 | A→G | 79.9% | intergenic (+476/+277) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,240 | A→C | 20.1% | intergenic (+477/+276) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,241 | C→T | 20.0% | intergenic (+478/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,243 | G→T | 75.9% | intergenic (+480/+273) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,244 | C→G | 76.0% | intergenic (+481/+272) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,245 | A→C | 76.0% | intergenic (+482/+271) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,255 | C→T | 100% | intergenic (+492/+261) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,257 | A→C | 100% | intergenic (+494/+259) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,260 | 2 bp→GC | 100% | intergenic (+497/+255) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,263 | A→C | 100% | intergenic (+500/+253) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,272 | A→G | 100% | intergenic (+509/+244) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,274 | A→C | 100% | intergenic (+511/+242) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,276 | G→C | 100% | intergenic (+513/+240) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,278 | C→T | 100% | intergenic (+515/+238) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,283:1 | +T | 100% | intergenic (+520/+233) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,289 | C→G | 100% | intergenic (+526/+227) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,292 | C→T | 100% | intergenic (+529/+224) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,294 | C→G | 100% | intergenic (+531/+222) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,296 | A→C | 100% | intergenic (+533/+220) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,298 | C→T | 100% | intergenic (+535/+218) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| JC | 4,808,175 | Δ14 bp | 100% | intergenic (‑284/‑258) | PP_4234 ← / → dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| JC | 4,808,177 | Δ103 bp | 66.7% | intergenic (‑286/‑167) | PP_4234 ← / → dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| RA | 4,960,263 | C→A | 76.3% | G70C (GGC→TGC) | fliF ← | Flagellar M‑ring protein |
| RA | 4,964,454 | C→T | 23.3% | D302N (GAC→AAC) | fleQ ← | Transcriptional regulator FleQ |
| JC | 4,980,585 | +GGC | 100% | intergenic (‑24/+44) | PP_4387 ← / ← flgE | conserved exported protein of unknown function/Flagellar hook protein FlgE |
| JC | 5,201,568 | Δ98 bp | 31.6% | intergenic (‑54/‑29) | PP_4582 ← / → PP_4583 | conserved membrane protein of unknown function/putative Peptidase |
| JC | 5,555,608 | +GCC | 100% | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | conserved protein of unknown function/putative methyl‑accepting chemotaxis transducer |
| RA | 5,674,750:1 | +G | 100% | intergenic (+112/+28) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding protein, acidic stress response factor |
| RA | 5,674,753 | G→C | 100% | intergenic (+115/+25) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding protein, acidic stress response factor |
| JC | 5,681,415 | +CGGG | 100% | intergenic (‑133/+71) | PP_4986 ← / ← PP_4987 | Channel protein, hemolysin III family/putative Chemotaxis protein |
| RA | 5,988,819 | T→C | 36.9% | intergenic (+113/‑433) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,824 | C→T | 32.2% | intergenic (+118/‑428) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,825 | G→T | 32.1% | intergenic (+119/‑427) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,826 | C→T | 32.1% | intergenic (+120/‑426) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,829 | A→G | 33.3% | intergenic (+123/‑423) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,835 | G→C | 31.3% | intergenic (+129/‑417) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,837 | C→G | 31.1% | intergenic (+131/‑415) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,840 | C→T | 33.3% | intergenic (+134/‑412) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,844 | C→G | 34.4% | intergenic (+138/‑408) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,848 | C→T | 33.3% | intergenic (+142/‑404) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,850 | C→T | 33.1% | intergenic (+144/‑402) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,889 | C→A | 33.3% | intergenic (+183/‑363) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,894 | C→T | 38.1% | intergenic (+188/‑358) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,895 | A→G | 38.1% | intergenic (+189/‑357) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,905 | T→C | 40.0% | intergenic (+199/‑347) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,911 | Δ1 bp | 40.0% | intergenic (+205/‑341) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 6,013,885 | T→C | 100% | intergenic (+90/+20) | xpt → / ← PP_5266 | Xanthine phosphoribosyltransferase/putative acetyl‑CoA hydrolase family protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AE015451 | 486316 | 486471 | 156 | 11 [10] | [10] 12 | apaG/rsmA | CO2+/MG2+ efflux protein/Ribosomal RNA small subunit methyltransferase A |
| * | * | ÷ | AE015451 | 726776 | 726901 | 126 | 13 [10] | [10] 12 | PP_0620/PP_0621 | GntR family transcriptional regulator/conserved protein of unknown function |
| * | * | ÷ | AE015451 | 790193 | 790383 | 191 | 14 [10] | [10] 11 | PP_0676 | putative Transcription elongation factor |
| * | * | ÷ | AE015451 | 965527 | 965684 | 158 | 12 [10] | [9] 11 | ptxC | putative phosphonate transport system permease protein PtxC |
| * | * | ÷ | AE015451 | 1156174 | 1156299 | 126 | 16 [8] | [10] 11 | [PP_1013] | [PP_1013] |
| * | * | ÷ | AE015451 | 1367545 | 1367842 | 298 | 11 [10] | [10] 11 | [PP_1193] | [PP_1193] |
| * | * | ÷ | AE015451 | 1421710 | 1422020 | 311 | 12 [10] | [10] 11 | PP_1246 | conserved exported protein of unknown function |
| * | * | ÷ | AE015451 | 1544294 | 1544499 | 206 | 11 [10] | [10] 14 | [mdfA] | [mdfA] |
| * | * | ÷ | AE015451 | 1691067 | 1691302 | 236 | 11 [10] | [9] 11 | PP_1487 | conserved protein of unknown function |
| * | * | ÷ | AE015451 | 2027338 | 2027546 | 209 | 11 [9] | [10] 12 | wbpL | Glycosyl transferase WbpL |
| * | * | ÷ | AE015451 | 2038213 | 2038420 | 208 | 11 [10] | [9] 11 | [rffE] | [rffE] |
| * | * | ÷ | AE015451 | 2039498 | 2039687 | 190 | 11 [9] | [10] 11 | [PP_1812] | [PP_1812] |
| * | * | ÷ | AE015451 | 2073343 | 2073495 | 153 | 11 [10] | [10] 12 | [PP_1847] | [PP_1847] |
| * | * | ÷ | AE015451 | 2095157 | 2095286 | 130 | 11 [10] | [10] 12 | [alaA] | [alaA] |
| * | * | ÷ | AE015451 | 2142343 | 2142566 | 224 | 11 [10] | [10] 13 | [PP_1897]–[PP_1898] | [PP_1897],[PP_1898] |
| * | * | ÷ | AE015451 | 2478384 | 2478523 | 140 | 12 [10] | [10] 11 | PP_2172 | conserved exported protein of unknown function |
| * | * | ÷ | AE015451 | 2865356 | 2865576 | 221 | 11 [9] | [10] 11 | [gllP]–[glllA] | [gllP],[glllA] |
| * | * | ÷ | AE015451 | 3287061 | 3287341 | 281 | 11 [9] | [10] 11 | [PP_2889]–[xthA] | [PP_2889],[xthA] |
| * | * | ÷ | AE015451 | 3443467 | 3443621 | 155 | 11 [8] | [7] 12 | PP_3062 | putative Pyocin R2_PP, tail length determination protein |
| * | * | ÷ | AE015451 | 3579928 | 3580057 | 130 | 11 [10] | [8] 11 | benR | BenABC operon transcriptional activator |
| * | * | ÷ | AE015451 | 3848776 | 3848959 | 184 | 11 [7] | [9] 11 | PP_3397 | conserved exported protein of unknown function |
| * | * | ÷ | AE015451 | 3985583 | 3985736 | 154 | 11 [10] | [10] 11 | [oplB] | [oplB] |
| * | * | ÷ | AE015451 | 4705242 | 4705396 | 155 | 12 [10] | [10] 11 | [kdpF] | [kdpF] |
| * | * | ÷ | AE015451 | 4839229 | 4839466 | 238 | 11 [10] | [10] 13 | [PP_4254] | [PP_4254] |
| * | * | ÷ | AE015451 | 5186538 | 5186797 | 260 | 11 [10] | [10] 12 | [PP_4566] | [PP_4566] |
| * | * | ÷ | AE015451 | 5389496 | 5389605 | 110 | 11 [10] | [10] 12 | dld2/PP_4738 | D‑lactate dehydrogenase/conserved exported protein of unknown function |
| * | * | ÷ | AE015451 | 5425399 | 5425651 | 253 | 11 [9] | [10] 11 | [PP_4765] | [PP_4765] |
| * | * | ÷ | AE015451 | 5660382 | 5660706 | 325 | 12 [10] | [9] 11 | ligB | DNA ligase B |
| * | * | ÷ | AE015451 | 5696588 | 5696759 | 172 | 11 [9] | [10] 11 | pyrC'/hslV | dihydroorotase‑like protein/peptidase component of the ATP‑dependent HslVU protease |
| * | * | ÷ | AE015451 | 5816919 | 5817184 | 266 | 11 [8] | [9] 11 | [pilT] | [pilT] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 147220 | 27 (0.660) | 3 (0.080) | 3/320 | NT | 11.0% | coding (978/1230 nt) | PP_0138 | conserved membrane protein of unknown function |
| ? | AE015451 | = 147242 | 23 (0.590) | coding (1000/1230 nt) | PP_0138 | conserved membrane protein of unknown function | |||||
| * | ? | AE015451 | = 313870 | 47 (1.150) | 4 (0.110) | 4/296 | NT | 8.8% | intergenic (+43/+8) | ygaU/yrfG | regulator of murein cross‑linking/purine nucleotidase |
| ? | AE015451 | = 313850 | 41 (1.140) | intergenic (+23/+28) | ygaU/yrfG | regulator of murein cross‑linking/purine nucleotidase | |||||
| * | ? | AE015451 | = 576122 | 44 (1.080) | 4 (0.110) | 4/300 | NT | 9.6% | coding (1159/3069 nt) | fdoG | formate dehydrogenase‑O major subunit |
| ? | AE015451 | = 576104 | 36 (0.990) | coding (1141/3069 nt) | fdoG | formate dehydrogenase‑O major subunit | |||||
| * | ? | AE015451 | = 596123 | 29 (0.710) | 3 (0.080) | 3/320 | NT | 9.6% | coding (31/1266 nt) | PP_0506 | putative ABC efflux transporter, permease protein |
| ? | AE015451 | = 596124 | 29 (0.750) | coding (30/1266 nt) | PP_0506 | putative ABC efflux transporter, permease protein | |||||
| * | ? | AE015451 | = 605066 | 28 (0.690) | 3 (0.080) | 3/322 | NT | 9.5% | coding (379/969 nt) | thiL | thiamin monophosphate kinase |
| ? | AE015451 | = 605092 | 30 (0.770) | coding (405/969 nt) | thiL | thiamin monophosphate kinase | |||||
| * | ? | AE015451 | 611504 = | NA (NA) | 7 (0.180) | 6/322 | NT | NA | coding (401/966 nt) | PP_0526 | transposase |
| ? | AE015451 | 611533 = | NA (NA) | coding (430/966 nt) | PP_0526 | transposase | |||||
| * | ? | AE015451 | = 637118 | 40 (0.980) | 3 (0.080) | 3/318 | NT | 7.6% | coding (1342/1350 nt) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
| ? | AE015451 | = 637159 | 35 (0.900) | coding (37/630 nt) | PP_0548 | putative phenylacrylic acid decarboxylase, padA1 | |||||
| * | ? | AE015451 | 682075 = | 14 (0.340) | 4 (0.110) | 4/308 | NT | 24.4% | coding (1198/1944 nt) | PP_0584 | Methyl‑accepting chemotaxis transducer |
| ? | AE015451 | 682089 = | 12 (0.320) | coding (1184/1944 nt) | PP_0584 | Methyl‑accepting chemotaxis transducer | |||||
| * | ? | AE015451 | 685602 = | 31 (0.760) | 3 (0.080) | 3/328 | NT | 9.1% | coding (645/2400 nt) | cadA‑II | cadmium translocating P‑type ATPase |
| ? | AE015451 | 685617 = | 30 (0.750) | coding (630/2400 nt) | cadA‑II | cadmium translocating P‑type ATPase | |||||
| * | ? | AE015451 | 765677 = | 40 (0.980) | 4 (0.100) | 4/320 | NT | 9.7% | coding (272/936 nt) | PP_0658 | Homocysteine S‑methyltransferase family protein |
| ? | AE015451 | 765702 = | 36 (0.920) | coding (297/936 nt) | PP_0658 | Homocysteine S‑methyltransferase family protein | |||||
| * | ? | AE015451 | = 776753 | 34 (0.830) | 3 (0.080) | 3/318 | NT | 8.3% | coding (859/966 nt) | PP_0668 | putative Transmembrane sensor |
| ? | AE015451 | = 776769 | 34 (0.880) | coding (875/966 nt) | PP_0668 | putative Transmembrane sensor | |||||
| * | ? | AE015451 | = 867949 | 23 (0.560) | 5 (0.130) | 5/306 | NT | 19.3% | intergenic (+47/+130) | PP_0750/mqo‑I | conserved protein of unknown function/malate:quinone oxidoreductase |
| ? | AE015451 | = 867979 | 21 (0.560) | intergenic (+77/+100) | PP_0750/mqo‑I | conserved protein of unknown function/malate:quinone oxidoreductase | |||||
| * | ? | AE015451 | = 886151 | 40 (0.980) | 3 (0.080) | 3/316 | NT | 6.9% | coding (2062/2718 nt) | PP_0767 | Transcriptional regulator, LuxR family |
| ? | AE015451 | = 886185 | 43 (1.120) | coding (2096/2718 nt) | PP_0767 | Transcriptional regulator, LuxR family | |||||
| * | ? | AE015451 | 941997 = | 40 (0.980) | 3 (0.080) | 3/316 | NT | 8.3% | coding (3625/18933 nt) | PP_0806 | putative Surface adhesion protein |
| ? | AE015451 | 942200 = | 29 (0.750) | coding (3422/18933 nt) | PP_0806 | putative Surface adhesion protein | |||||
| * | ? | AE015451 | 949238 = | 32 (0.780) | 4 (0.100) | 4/318 | NT | 12.8% | coding (80/507 nt) | dsbB | disulfide bond formation protein B |
| ? | AE015451 | 949363 = | 24 (0.620) | coding (205/507 nt) | dsbB | disulfide bond formation protein B | |||||
| * | ? | AE015451 | 1190971 = | 32 (0.780) | 4 (0.100) | 4/316 | NT | 11.7% | coding (493/966 nt) | xcpX | Type II secretion system protein K |
| ? | AE015451 | 1191043 = | 30 (0.780) | coding (565/966 nt) | xcpX | Type II secretion system protein K | |||||
| * | ? | AE015451 | 1196535 = | 32 (0.780) | 4 (0.100) | 3/320 | NT | 10.5% | coding (596/1755 nt) | xcpQ | Type II secretion pathway protein XcpQ |
| ? | AE015451 | 1196595 = | 38 (0.980) | coding (656/1755 nt) | xcpQ | Type II secretion pathway protein XcpQ | |||||
| * | ? | AE015451 | = 1202951 | 33 (0.810) | 3 (0.080) | 3/312 | NT | 7.9% | coding (780/1089 nt) | xcpY | Type II secretion pathway protein XcpY |
| ? | AE015451 | = 1203076 | 39 (1.030) | coding (905/1089 nt) | xcpY | Type II secretion pathway protein XcpY | |||||
| * | ? | AE015451 | 1296784 = | NA (NA) | 14 (0.360) | 11/322 | NT | NA | intergenic (‑537/‑29) | nhaA‑I/PP_1133 | Na(+)/H(+) antiporter NhaA 1/transposase |
| ? | AE015451 | 1296822 = | NA (NA) | coding (10/1329 nt) | PP_1133 | transposase | |||||
| * | ? | AE015451 | = 1587163 | 24 (0.590) | 4 (0.100) | 4/326 | NT | 14.7% | coding (243/909 nt) | PP_1391 | Transcriptional regulator, LysR family |
| ? | AE015451 | = 1587173 | 23 (0.580) | coding (233/909 nt) | PP_1391 | Transcriptional regulator, LysR family | |||||
| * | ? | AE015451 | 1682699 = | 32 (0.780) | 4 (0.100) | 4/318 | NT | 11.2% | coding (1218/1710 nt) | recJ | ssDNA‑specific exonuclease RecJ |
| ? | AE015451 | 1682746 = | 33 (0.850) | coding (1265/1710 nt) | recJ | ssDNA‑specific exonuclease RecJ | |||||
| * | ? | AE015451 | 1737987 = | 57 (1.390) | 8 (0.220) | 8/302 | NT | 16.5% | coding (32/348 nt) | yffB | putative glutathione‑dependent thiol reductase |
| ? | AE015451 | = 1777401 | 30 (0.820) | intergenic (+135/+157) | PP_5476/PP_1585 | conserved protein of unknown function/putative Antidote protein | |||||
| * | ? | AE015451 | = 1759389 | 50 (1.220) | 3 (0.080) | 3/328 | NT | 5.5% | coding (552/1296 nt) | PP_1565 | Phage portal protein, HK97 family |
| ? | AE015451 | = 1759410 | 55 (1.380) | coding (573/1296 nt) | PP_1565 | Phage portal protein, HK97 family | |||||
| * | ? | AE015451 | = 1842345 | 23 (0.560) | 4 (0.110) | 4/312 | NT | 15.6% | coding (2449/2754 nt) | gacS | Sensor protein GacS |
| ? | AE015451 | = 1842393 | 22 (0.580) | coding (2401/2754 nt) | gacS | Sensor protein GacS | |||||
| * | ? | AE015451 | 1893964 = | 40 (0.980) | 4 (0.100) | 4/318 | NT | 10.7% | coding (90/843 nt) | PP_1699 | 2‑pyrone‑4,6‑dicarboxylic acid hydrolase |
| ? | AE015451 | 1894002 = | 29 (0.750) | coding (128/843 nt) | PP_1699 | 2‑pyrone‑4,6‑dicarboxylic acid hydrolase | |||||
| * | ? | AE015451 | 2033404 = | 13 (0.320) | 6 (0.150) | 6/328 | NT | 32.1% | coding (885/1665 nt) | pgi‑I | glucose‑6‑phosphate isomerase |
| ? | AE015451 | 2033445 = | NA (NA) | coding (926/1665 nt) | pgi‑I | glucose‑6‑phosphate isomerase | |||||
| * | ? | AE015451 | 2050559 = | 34 (0.830) | 3 (0.090) | 3/262 | NT | 13.5% | intergenic (‑52/+123) | PP_1824/PP_1825 | Smr domain protein/conserved exported protein of unknown function |
| ? | AE015451 | 2050669 = | 12 (0.380) | intergenic (‑162/+13) | PP_1824/PP_1825 | Smr domain protein/conserved exported protein of unknown function | |||||
| * | ? | AE015451 | 2057883 = | 30 (0.730) | 4 (0.110) | 4/310 | NT | 10.7% | intergenic (+99/+29) | PP_1832/PP_1833 | putative Oxidase/conserved protein of unknown function |
| ? | AE015451 | 2057988 = | 39 (1.030) | coding (227/303 nt) | PP_1833 | conserved protein of unknown function | |||||
| * | ? | AE015451 | 2086557 = | NA (NA) | 3 (0.080) | 3/320 | NT | NA | coding (672/1302 nt) | PP_1865 | transposase |
| ? | AE015451 | 2086620 = | NA (NA) | coding (735/1302 nt) | PP_1865 | transposase | |||||
| * | ? | AE015451 | = 2290891 | 33 (0.810) | 3 (0.080) | 3/320 | NT | 8.2% | coding (242/960 nt) | PP_2018 | BNR domain protein |
| ? | AE015451 | = 2290917 | 36 (0.920) | coding (268/960 nt) | PP_2018 | BNR domain protein | |||||
| * | ? | AE015451 | = 2407189 | 41 (1.000) | 4 (0.100) | 4/320 | NT | 8.6% | coding (1376/1566 nt) | PP_2111 | putative aerotaxis receptor |
| ? | AE015451 | = 2407201 | 46 (1.180) | coding (1364/1566 nt) | PP_2111 | putative aerotaxis receptor | |||||
| * | ? | AE015451 | 2410319 = | 56 (1.370) | 3 (0.080) | 3/314 | NT | 6.2% | coding (1129/2742 nt) | acnA‑I | aconitate hydratase 1 |
| ? | AE015451 | 2410393 = | 38 (0.990) | coding (1055/2742 nt) | acnA‑I | aconitate hydratase 1 | |||||
| * | ? | AE015451 | = 2472115 | 33 (0.810) | 4 (0.100) | 4/322 | NT | 12.0% | intergenic (+19/+130) | PP_2166/PP_2167 | Anti‑anti‑sigma factor/putative PhoD‑like phosphatase |
| ? | AE015451 | 2472313 = | 27 (0.690) | coding (1783/1851 nt) | PP_2167 | putative PhoD‑like phosphatase | |||||
| * | ? | AE015451 | = 2487671 | 34 (0.830) | 3 (0.080) | 3/316 | NT | 7.9% | coding (43/516 nt) | PP_2182 | conserved protein of unknown function |
| ? | AE015451 | = 2487726 | 38 (0.990) | coding (98/516 nt) | PP_2182 | conserved protein of unknown function | |||||
| * | ? | AE015451 | 2524241 = | 39 (0.950) | 3 (0.080) | 3/318 | NT | 8.1% | coding (963/1686 nt) | PP_2213 | putative acyl‑CoA synthetase |
| ? | AE015451 | 2524282 = | 31 (0.800) | coding (1004/1686 nt) | PP_2213 | putative acyl‑CoA synthetase | |||||
| * | ? | AE015451 | 2689525 = | 36 (0.880) | 3 (0.080) | 3/316 | NT | 9.0% | coding (955/2268 nt) | PP_2356 | putative Phytochrome family protein |
| ? | AE015451 | 2689657 = | 27 (0.700) | coding (823/2268 nt) | PP_2356 | putative Phytochrome family protein | |||||
| * | ? | AE015451 | = 2691885 | 29 (0.710) | 3 (0.080) | 3/312 | NT | 9.5% | coding (46/534 nt) | PP_2359 | putative Type 1 pili subunit CsuA/B protein |
| ? | AE015451 | = 2691895 | 30 (0.790) | coding (56/534 nt) | PP_2359 | putative Type 1 pili subunit CsuA/B protein | |||||
| * | ? | AE015451 | 2813116 = | 38 (0.930) | 3 (0.080) | 3/300 | NT | 9.5% | coding (301/1017 nt) | pheS | Phenylalanine‑‑tRNA ligase alpha subunit |
| ? | AE015451 | 2813134 = | 23 (0.630) | coding (319/1017 nt) | pheS | Phenylalanine‑‑tRNA ligase alpha subunit | |||||
| * | ? | AE015451 | = 2964062 | 41 (1.000) | 4 (0.100) | 4/320 | NT | 9.1% | coding (808/942 nt) | fatD | Ferric anguibactin transport system permease protein FatD |
| ? | AE015451 | = 2964083 | 41 (1.050) | coding (787/942 nt) | fatD | Ferric anguibactin transport system permease protein FatD | |||||
| * | ? | AE015451 | = 3021459 | 43 (1.050) | 3 (0.080) | 3/318 | NT | 7.2% | coding (1997/3519 nt) | PP_2638 | putative Cellulose synthase operon C protein |
| ? | AE015451 | = 3021491 | 37 (0.960) | coding (2029/3519 nt) | PP_2638 | putative Cellulose synthase operon C protein | |||||
| * | ? | AE015451 | 3209796 = | 40 (0.980) | 4 (0.100) | 4/314 | NT | 9.1% | intergenic (+57/+60) | PP_2813/PP_2814 | BNR domain protein/conserved protein of unknown function |
| ? | AE015451 | 3209843 = | 43 (1.130) | intergenic (+104/+13) | PP_2813/PP_2814 | BNR domain protein/conserved protein of unknown function | |||||
| * | ? | AE015451 | = 3328566 | 35 (0.860) | 4 (0.100) | 4/314 | NT | 11.0% | coding (117/1047 nt) | PP_2927 | conserved protein of unknown function |
| ? | AE015451 | = 3328706 | 32 (0.840) | coding (257/1047 nt) | PP_2927 | conserved protein of unknown function | |||||
| * | ? | AE015451 | = 3387405 | 32 (0.780) | 3 (0.080) | 3/320 | NT | 8.9% | coding (186/795 nt) | PP_2989 | Oxidoreductase, short chain dehydrogenase/reductase family |
| ? | AE015451 | = 3387439 | 31 (0.800) | coding (220/795 nt) | PP_2989 | Oxidoreductase, short chain dehydrogenase/reductase family | |||||
| * | ? | AE015451 | 3398276 = | 48 (1.170) | 4 (0.100) | 4/318 | NT | 7.8% | coding (757/819 nt) | PP_3002 | shikimate dehydrogenase‑related enzyme |
| ? | AE015451 | 3398411 = | 49 (1.270) | coding (69/438 nt) | aroQ‑III | 3‑dehydroquinate dehydratase 3, type II | |||||
| * | ? | AE015451 | = 3441809 | 23 (0.560) | 3 (0.080) | 3/322 | NT | 10.9% | coding (568/3270 nt) | PP_3062 | putative Pyocin R2_PP, tail length determination protein |
| ? | AE015451 | = 3441822 | 27 (0.690) | coding (581/3270 nt) | PP_3062 | putative Pyocin R2_PP, tail length determination protein | |||||
| * | ? | AE015451 | = 3638812 | 21 (0.510) | 3 (0.080) | 3/318 | NT | 12.8% | coding (808/993 nt) | PP_3205 | Fumarylacetoacetate hydrolase family protein |
| ? | AE015451 | = 3638821 | 21 (0.540) | coding (817/993 nt) | PP_3205 | Fumarylacetoacetate hydrolase family protein | |||||
| * | ? | AE015451 | 3663643 = | 22 (0.540) | 4 (0.110) | 4/304 | NT | 16.4% | coding (267/891 nt) | PP_3227 | Transcriptional regulator, LysR family |
| ? | AE015451 | 3663659 = | 21 (0.570) | coding (251/891 nt) | PP_3227 | Transcriptional regulator, LysR family | |||||
| * | ? | AE015451 | 3868842 = | 28 (0.690) | 5 (0.130) | 5/320 | NT | 17.6% | coding (1108/1353 nt) | gntT | D‑gluconate transporter |
| ? | AE015451 | 3868874 = | 20 (0.510) | coding (1140/1353 nt) | gntT | D‑gluconate transporter | |||||
| * | ? | AE015451 | 4003754 = | 50 (1.220) | 3 (0.080) | 3/322 | NT | 6.3% | coding (94/423 nt) | PP_3532 | Transcriptional regulator, AsnC family |
| ? | AE015451 | 4003784 = | 42 (1.070) | coding (64/423 nt) | PP_3532 | Transcriptional regulator, AsnC family | |||||
| * | ? | AE015451 | 4029531 = | 39 (0.950) | 3 (0.080) | 3/320 | NT | 8.3% | coding (909/1623 nt) | PP_3553 | AMP‑binding domain protein |
| ? | AE015451 | 4029566 = | 29 (0.750) | coding (944/1623 nt) | PP_3553 | AMP‑binding domain protein | |||||
| * | ? | AE015451 | 4053468 = | 33 (0.810) | 3 (0.080) | 3/320 | NT | 8.5% | coding (42/1320 nt) | PP_3573 | putative Monooxygenase |
| ? | AE015451 | 4053485 = | 33 (0.850) | coding (59/1320 nt) | PP_3573 | putative Monooxygenase | |||||
| * | ? | AE015451 | 4320150 = | 50 (1.220) | 3 (0.080) | 3/324 | NT | 5.3% | coding (615/627 nt) | PP_3791 | Site‑specific recombinase, phage integrase family |
| ? | AE015451 | 4320231 = | 58 (1.470) | coding (534/627 nt) | PP_3791 | Site‑specific recombinase, phage integrase family | |||||
| * | ? | AE015451 | 4418726 = | 42 (1.030) | 5 (0.130) | 5/312 | NT | 11.4% | coding (242/351 nt) | PP_3908 | conserved protein of unknown function |
| ? | AE015451 | 4418770 = | 39 (1.030) | coding (286/351 nt) | PP_3908 | conserved protein of unknown function | |||||
| * | ? | AE015451 | 4656864 = | 41 (1.000) | 3 (0.080) | 3/320 | NT | 7.4% | coding (257/678 nt) | nuoB | NADH‑quinone oxidoreductase subunit B |
| ? | AE015451 | 4656948 = | 36 (0.920) | coding (341/678 nt) | nuoB | NADH‑quinone oxidoreductase subunit B | |||||
| * | ? | AE015451 | 4743577 = | 55 (1.350) | 4 (0.100) | 4/320 | NT | 7.3% | coding (415/1593 nt) | PP_4197 | Transcriptional regulator, GntR family |
| ? | AE015451 | 4743666 = | 49 (1.260) | coding (326/1593 nt) | PP_4197 | Transcriptional regulator, GntR family | |||||
| * | ? | AE015451 | 4808174 = | 0 (0.000) | 8 (0.250) | 6/266 | NT | 43.2% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | = 5988935 | 21 (0.650) | intergenic (+229/‑317) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | = 4808179 | 0 (0.000) | 18 (0.470) | 13/312 | NT | 59.0% | intergenic (‑288/‑267) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | 5988765 = | 25 (0.660) | intergenic (+59/‑487) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | = 4829472 | 20 (0.490) | 5 (0.130) | 5/316 | NT | 17.0% | coding (1718/12954 nt) | pvdL | non‑ribosomal peptide synthase (subunit of ferribactin synthase) |
| ? | AE015451 | = 4829518 | 30 (0.780) | coding (1672/12954 nt) | pvdL | non‑ribosomal peptide synthase (subunit of ferribactin synthase) | |||||
| * | ? | AE015451 | = 4837161 | 30 (0.730) | 3 (0.080) | 3/310 | NT | 8.3% | coding (1168/1425 nt) | ccoN‑I | cytochrome c oxidase subunit I, cbb3‑type |
| ? | AE015451 | = 4837272 | 39 (1.030) | coding (1279/1425 nt) | ccoN‑I | cytochrome c oxidase subunit I, cbb3‑type | |||||
| * | ? | AE015451 | = 4865790 | 30 (0.730) | 3 (0.080) | 3/316 | NT | 9.3% | coding (83/3489 nt) | smc | Chromosome partition protein Smc |
| ? | AE015451 | = 4865814 | 30 (0.780) | coding (59/3489 nt) | smc | Chromosome partition protein Smc | |||||
| * | ? | AE015451 | = 4932141 | 37 (0.910) | 3 (0.080) | 3/322 | NT | 6.9% | coding (77/741 nt) | fliA | RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons |
| ? | AE015451 | = 4932230 | 45 (1.150) | coding (818/834 nt) | PP_4342 | flagellar synthesis regulator, putative ATPase | |||||
| * | ? | AE015451 | = 4933879 | 30 (0.730) | 6 (0.160) | 6/304 | NT | 17.9% | coding (570/1308 nt) | flhF | Flagellar biosynthesis protein FlhF |
| ? | AE015451 | = 4933863 | 28 (0.760) | coding (586/1308 nt) | flhF | Flagellar biosynthesis protein FlhF | |||||
| * | ? | AE015451 | = 4945203 | 41 (1.000) | 5 (0.130) | 5/318 | NT | 13.2% | intergenic (+563/+235) | PP_5673/flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein |
| ? | AE015451 | 4945621 = | 27 (0.700) | coding (960/1143 nt) | flhB | flagellin export apparatus, substrate specificity protein | |||||
| * | ? | AE015451 | = 4945209 | 41 (1.000) | 6 (0.160) | 6/318 | NT | 15.4% | intergenic (+569/+229) | PP_5673/flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein |
| ? | AE015451 | 4945455 = | 27 (0.700) | coding (1126/1143 nt) | flhB | flagellin export apparatus, substrate specificity protein | |||||
| * | ? | AE015451 | = 5195895 | 43 (1.050) | 4 (0.100) | 4/320 | NT | 9.8% | coding (620/690 nt) | ybgJ | allophanate hydrolase subunit |
| ? | AE015451 | = 5195952 | 33 (0.850) | coding (563/690 nt) | ybgJ | allophanate hydrolase subunit | |||||
| * | ? | AE015451 | = 5337245 | 32 (0.780) | 3 (0.080) | 3/322 | NT | 8.7% | coding (695/1443 nt) | PP_4696 | Nitrogen regulation protein NR(I) |
| ? | AE015451 | = 5337247 | 32 (0.820) | coding (697/1443 nt) | PP_4696 | Nitrogen regulation protein NR(I) | |||||
| * | ? | AE015451 | = 5509910 | 56 (1.370) | 7 (0.190) | 7/296 | NT | 12.1% | coding (109/1488 nt) | urtB | putative Urea ABC transporter |
| ? | AE015451 | = 5509890 | 52 (1.440) | coding (89/1488 nt) | urtB | putative Urea ABC transporter | |||||
| * | ? | AE015451 | 5623387 = | 47 (1.150) | 3 (0.080) | 3/320 | NT | 6.5% | coding (351/1404 nt) | PP_4941 | conserved exported protein of unknown function |
| ? | AE015451 | 5623405 = | 41 (1.050) | coding (333/1404 nt) | PP_4941 | conserved exported protein of unknown function | |||||
| * | ? | AE015451 | 5798368 = | 27 (0.660) | 3 (0.080) | 3/322 | NT | 11.6% | coding (1495/1590 nt) | PP_5077 | conserved protein of unknown function |
| ? | AE015451 | 5798388 = | 20 (0.510) | coding (1475/1590 nt) | PP_5077 | conserved protein of unknown function | |||||
| * | ? | AE015451 | = 5822202 | 48 (1.170) | 3 (0.080) | 3/304 | NT | 6.6% | coding (162/435 nt) | PP_5099 | conserved protein of unknown function |
| ? | AE015451 | = 5822186 | 42 (1.140) | coding (146/435 nt) | PP_5099 | conserved protein of unknown function | |||||
| * | ? | AE015451 | 5827746 = | 29 (0.710) | 3 (0.080) | 3/320 | NT | 10.1% | coding (659/711 nt) | mtgA | Monofunctional biosynthetic peptidoglycan transglycosylase |
| ? | AE015451 | 5827764 = | 26 (0.670) | coding (677/711 nt) | mtgA | Monofunctional biosynthetic peptidoglycan transglycosylase | |||||
| * | ? | AE015451 | = 5856275 | 38 (0.930) | 3 (0.080) | 3/318 | NT | 7.8% | coding (202/1392 nt) | PP_5133 | conserved membrane protein of unknown function |
| ? | AE015451 | = 5856285 | 35 (0.900) | coding (212/1392 nt) | PP_5133 | conserved membrane protein of unknown function | |||||
| * | ? | AE015451 | 5874548 = | 44 (1.080) | 3 (0.080) | 3/314 | NT | 6.8% | intergenic (‑40/+108) | PP_5148/ilvA‑II | conserved membrane protein of unknown function/threonine deaminase |
| ? | AE015451 | 5874630 = | 41 (1.070) | intergenic (‑122/+26) | PP_5148/ilvA‑II | conserved membrane protein of unknown function/threonine deaminase | |||||
| * | ? | AE015451 | = 5922049 | 40 (0.980) | 4 (0.100) | 4/316 | NT | 8.2% | coding (2382/2874 nt) | gcvP‑II | glycine dehydrogenase |
| ? | AE015451 | = 5922165 | 52 (1.350) | coding (2266/2874 nt) | gcvP‑II | glycine dehydrogenase | |||||
| * | ? | AE015451 | = 5943622 | 49 (1.200) | 4 (0.110) | 3/292 | NT | 8.4% | intergenic (+30/+55) | PP_5210/PP_5211 | Alcohol dehydrogenase, zinc‑containing/ChaC‑related protein |
| ? | AE015451 | = 5943643 | 45 (1.270) | intergenic (+51/+34) | PP_5210/PP_5211 | Alcohol dehydrogenase, zinc‑containing/ChaC‑related protein | |||||
| * | ? | AE015451 | = 5988757 | 26 (0.640) | 9 (0.230) | 8/320 | NT | 22.6% | intergenic (+51/‑495) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| ? | AE015451 | 5988979 = | 37 (0.950) | intergenic (+273/‑273) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | = 5988771 | 25 (0.610) | 8 (0.210) | 8/320 | NT | 23.3% | intergenic (+65/‑481) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| ? | AE015451 | 5988963 = | 29 (0.750) | intergenic (+257/‑289) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | = 6002217 | 40 (0.980) | 3 (0.070) | 3/330 | NT | 6.8% | coding (84/1299 nt) | amaA | L‑pipecolate oxidase |
| ? | AE015451 | = 6002230 | 43 (1.070) | coding (71/1299 nt) | amaA | L‑pipecolate oxidase | |||||
| * | ? | AE015451 | 6051932 = | 37 (0.910) | 3 (0.080) | 3/314 | NT | 8.0% | coding (225/732 nt) | PP_5304 | putative Lipoprotein |
| ? | AE015451 | 6052033 = | 34 (0.890) | coding (326/732 nt) | PP_5304 | putative Lipoprotein | |||||