mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 44,865 | T→A | 100% | intergenic (‑46/‑455) | abrB ← / → metG | transition state genes transcriptional regulator AbrB/methionine‑‑tRNA ligase |
| RA | 44,870 | 2 bp→TC | 100% | intergenic (‑51/‑449) | abrB ← / → metG | transition state genes transcriptional regulator AbrB/methionine‑‑tRNA ligase |
| RA | 132,185 | G→A | 100% | D560N (GAC→AAC) | fusA → | elongation factor G |
| RA | 177,101 | G→T | 9.1% | M1F (TTG→TTT) † | EO946_RS01025 → | SulP family inorganic anion transporter |
| RA | 240,198 | G→T | 14.9% | Q112K (CAA→AAA) | EO946_RS01360 ← | hypothetical protein |
| RA | 240,207 | G→T | 10.5% | Q109K (CAA→AAA) | EO946_RS01360 ← | hypothetical protein |
| RA | 240,218 | C→A | 5.6% | G105V (GGA→GTA) | EO946_RS01360 ← | hypothetical protein |
| RA | 293,858 | A→C | 7.4% | N79T (AAT→ACT) | EO946_RS01645 → | aldo/keto reductase |
| RA | 316,300 | G→C | 8.9% | L40L (CTG→CTC) | opuAA → | glycine/proline betaine ABC transporter ATP‑binding protein OpuAA |
| RA | 607,410 | C→G | 5.7% | P85A (CCA→GCA) | EO946_RS03185 → | collagen‑like protein |
| JC | 607,424 | 27 bp→108 bp | 44.4% | coding (267‑293/1125 nt) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,700 | A→C | 12.2% | E181D (GAA→GAC) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,838 | A→G | 8.6% | T227T (ACA→ACG) | EO946_RS03185 → | collagen‑like protein |
| RA | 634,052 | T→G | 17.4% | E573D (GAA→GAC) | EO946_RS03330 ← | ABC‑F family ATP‑binding cassette domain‑containing protein |
| RA | 648,130 | A→T | 7.0% | L435L (CTA→CTT) | EO946_RS03395 → | MFS transporter |
| RA | 755,531 | A→C | 10.5% | Q22H (CAA→CAC) | EO946_RS03880 → | rhamnogalacturonan acetylesterase |
| RA | 892,198 | G→A | 5.4% | P283P (CCG→CCA) | EO946_RS04510 → | iron ABC transporter permease |
| RA | 1,170,453 | A→C | 5.5% | K312N (AAA→AAC) | EO946_RS06025 → | carbamoyl phosphate synthase large subunit |
| RA | 1,215,179 | A→C | 5.7% | K81N (AAA→AAC) | thiF → | thiazole biosynthesis adenylyltransferase ThiF |
| RA | 1,243,010 | T→A | 5.0% | V650E (GTG→GAG) | manP → | PTS mannose transporter subunit IIABC |
| RA | 1,243,026 | A→T | 5.6% | intergenic (+12/‑4) | manP → / → manA | PTS mannose transporter subunit IIABC/mannose‑6‑phosphate isomerase, class I |
| RA | 1,263,998 | C→A | 11.0% | L62F (TTG→TTT) | fetB ← | iron export ABC transporter permease subunit FetB |
| RA | 1,488,182 | G→T | 6.8% | A575S (GCA→TCA) | ade → | adenine deaminase |
| RA | 1,720,712 | C→A | 14.3% | T212T (ACC→ACA) | spoIIIE → | DNA translocase SpoIIIE |
| RA | 1,753,584 | G→T | 12.6% | intergenic (+275/‑230) | fabD → / → EO946_RS09090 | ACP S‑malonyltransferase/acyltransferase domain‑containing protein |
| RA | 1,753,622 | C→A | 7.0% | intergenic (+313/‑192) | fabD → / → EO946_RS09090 | ACP S‑malonyltransferase/acyltransferase domain‑containing protein |
| RA | 2,098,642 | C→A | 6.5% | V297F (GTC→TTC) | EO946_RS10535 ← | solute:sodium symporter family transporter |
| RA | 2,179,638 | G→T | 7.2% | L212F (TTG→TTT) | EO946_RS11020 → | queuosine precursor transporter |
| RA | 2,214,528 | G→T | 6.2% | Q57K (CAA→AAA) | nth ← | endonuclease III |
| RA | 2,502,212 | T→G | 11.7% | N284H (AAC→CAC) | hrcA ← | heat‑inducible transcriptional repressor HrcA |
| RA | 2,900,793 | C→A | 6.5% | P118P (CCC→CCA) | EO946_RS14945 → | extracellular solute‑binding protein |
| RA | 2,979,248 | T→C | 27.6% | noncoding (1553/2928 nt) | EO946_RS15430 ← | 23S ribosomal RNA |
| RA | 2,980,160 | G→A | 15.6% | noncoding (641/2928 nt) | EO946_RS15430 ← | 23S ribosomal RNA |
| RA | 3,052,465 | G→A | 6.1% | T111T (ACG→ACA) | EO946_RS15780 → | Na+/H+ antiporter subunit E |
| RA | 3,169,618 | G→A | 5.3% | I63I (ATC→ATT) | EO946_RS16390 ← | carboxymuconolactone decarboxylase family protein |
| RA | 3,169,675 | T→C | 5.3% | Q44Q (CAA→CAG) | EO946_RS16390 ← | carboxymuconolactone decarboxylase family protein |
| RA | 3,219,734 | C→A | 7.1% | Q358K (CAA→AAA) | oxdC → | oxalate decarboxylase |
| RA | 3,247,065 | C→T | 100% | intergenic (‑11/+110) | bdbD ← / ← cadA | disulfide bond formation protein BdbD/cadmium‑translocating P‑type ATPase |
| RA | 3,285,491 | T→C | 5.5% | I304V (ATT→GTT) | EO946_RS16995 ← | IS3 family transposase |
| RA | 3,285,567 | C→T | 32.2% | L278L (CTG→CTA) | EO946_RS16995 ← | IS3 family transposase |
| RA | 3,285,575 | T→G | 32.3% | N276H (AAT→CAT) | EO946_RS16995 ← | IS3 family transposase |
| RA | 3,285,580 | A→G | 36.0% | I274T (ATA→ACA) | EO946_RS16995 ← | IS3 family transposase |
| RA | 3,285,647 | C→A | 37.9% | V252L (GTA→TTA) | EO946_RS16995 ← | IS3 family transposase |
| RA | 3,285,713 | G→A | 28.6% | L230L (CTA→TTA) | EO946_RS16995 ← | IS3 family transposase |
| RA | 3,446,995 | C→A | 6.3% | V197V (GTG→GTT) | degU ← | two‑component system response regulator DegU |
| RA | 3,447,038 | T→G | 9.8% | N183T (AAC→ACC) | degU ← | two‑component system response regulator DegU |
| RA | 3,562,015 | A→C | 11.2% | intergenic (‑661/‑137) | EO946_RS18300 ← / → EO946_RS21105 | response regulator/HAMP domain‑containing histidine kinase |
| RA | 3,791,922 | T→G | 5.7% | E126D (GAA→GAC) | EO946_RS19535 ← | DNA‑3‑methyladenine glycosylase |
| RA | 3,843,776 | C→G | 7.4% | V161L (GTT→CTT) | EO946_RS19775 ← | hypothetical protein |
| RA | 3,843,812 | C→A | 9.9% | E149* (GAG→TAG) | EO946_RS19775 ← | hypothetical protein |
| RA | 3,851,230 | G→T | 5.7% | Q49K (CAG→AAG) | EO946_RS19820 ← | hypothetical protein |
| RA | 3,851,237 | G→T | 6.9% | I46I (ATC→ATA) | EO946_RS19820 ← | hypothetical protein |
| RA | 3,906,067 | A→C | 12.0% | I42S (ATT→AGT) | EO946_RS20100 ← | DUF3255 family protein |
| RA | 3,996,926 | T→A | 7.2% | N132Y (AAT→TAT) | EO946_RS20530 ← | VOC family protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | = 91969 | NA (NA) | 5 (0.020) | 5/250 | NT | NA | intergenic (+131/‑39) | EO946_RS00485/EO946_RS00490 | 16S ribosomal RNA/23S ribosomal RNA |
| ? | NZ_CP034943 | 91973 = | NA (NA) | intergenic (+135/‑35) | EO946_RS00485/EO946_RS00490 | 16S ribosomal RNA/23S ribosomal RNA | |||||