mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 25,728 | G→A | intergenic (+153/‑418) | RPPX_00140 → / → RPPX_00145 | MarR family transcriptional regulator/(2Fe‑2S)‑binding protein |
| RA | 25,739 | A→T | intergenic (+164/‑407) | RPPX_00140 → / → RPPX_00145 | MarR family transcriptional regulator/(2Fe‑2S)‑binding protein |
| RA | 25,890 | G→A | intergenic (+315/‑256) | RPPX_00140 → / → RPPX_00145 | MarR family transcriptional regulator/(2Fe‑2S)‑binding protein |
| RA | 139,240 | G→T | intergenic (+242/+57) | RPPX_00595 → / ← RPPX_00600 | 3‑methylcrotonyl‑CoA carboxylase/Cro/Cl family transcriptional regulator |
| RA | 181,839 | C→T | V62V (GTG→GTA) | RPPX_00810 ← | phage head protein |
| RA | 204,113 | G→A | G487S (GGC→AGC) | RPPX_00895 → | hypothetical protein |
| RA | 269,078 | (C)5→4 | coding (198/1623 nt) | RPPX_01185 ← | PvdJ/PvdD/PvdP‑like protein |
| RA | 380,918 | C→T | T135I (ACC→ATC) | RPPX_01535 → | guanine permease |
| RA | 382,164 | T→C | intergenic (+300/+229) | RPPX_01535 → / ← RPPX_01540 | guanine permease/5‑hydroxyisourate hydrolase |
| RA | 382,181 | T→C | intergenic (+317/+212) | RPPX_01535 → / ← RPPX_01540 | guanine permease/5‑hydroxyisourate hydrolase |
| RA | 382,187 | C→T | intergenic (+323/+206) | RPPX_01535 → / ← RPPX_01540 | guanine permease/5‑hydroxyisourate hydrolase |
| RA | 382,193 | T→C | intergenic (+329/+200) | RPPX_01535 → / ← RPPX_01540 | guanine permease/5‑hydroxyisourate hydrolase |
| RA | 418,393 | C→T | C10Y (TGC→TAC) | RPPX_01715 ← | hypothetical protein |
| RA | 418,408 | C→G | C5S (TGC→TCC) | RPPX_01715 ← | hypothetical protein |
| RA | 418,441 | Δ1 bp | intergenic (‑20/+631) | RPPX_01715 ← / ← RPPX_01720 | hypothetical protein/lipoprotein |
| RA | 418,449 | Δ1 bp | intergenic (‑28/+623) | RPPX_01715 ← / ← RPPX_01720 | hypothetical protein/lipoprotein |
| RA | 532,826 | (C)6→5 | intergenic (‑284/‑24) | RPPX_02255 ← / → RPPX_02260 | alanyl‑tRNA synthetase/hemolysin‑like protein |
| RA | 542,045 | T→C | intergenic (‑306/+223) | argD ← / ← RPPX_02300 | acetylornithine aminotransferase/AraC family transcriptional regulator |
| RA | 542,069 | T→C | intergenic (‑330/+199) | argD ← / ← RPPX_02300 | acetylornithine aminotransferase/AraC family transcriptional regulator |
| RA | 542,073 | T→C | intergenic (‑334/+195) | argD ← / ← RPPX_02300 | acetylornithine aminotransferase/AraC family transcriptional regulator |
| RA | 542,098 | A→T | intergenic (‑359/+170) | argD ← / ← RPPX_02300 | acetylornithine aminotransferase/AraC family transcriptional regulator |
| RA | 542,104 | C→G | intergenic (‑365/+164) | argD ← / ← RPPX_02300 | acetylornithine aminotransferase/AraC family transcriptional regulator |
| RA | 542,115 | 2 bp→TG | intergenic (‑376/+152) | argD ← / ← RPPX_02300 | acetylornithine aminotransferase/AraC family transcriptional regulator |
| RA | 605,455 | (C)7→8 | coding (914/924 nt) | RPPX_02580 → | LysR family transcriptional regulator |
| RA | 659,171 | A→G | V185A (GTC→GCC) | RPPX_02840 ← | ribonuclease D |
| RA | 709,290 | T→C | A293A (GCA→GCG) | RPPX_03080 ← | cell envelope biogenesis protein TolA |
| RA | 738,452 | (C)6→7 | coding (1308/1347 nt) | RPPX_03230 ← | histidine kinase |
| RA | 753,050 | A→G | intergenic (+50/‑204) | RPPX_03275 → / → RPPX_03280 | porin/NAD‑dependent dehydratase |
| RA | 768,193 | A→G | G462G (GGT→GGC) | RPPX_03350 ← | acetolactate synthase |
| RA | 769,699 | (G)9→10 | intergenic (‑121/+347) | RPPX_03350 ← / ← RPPX_03355 | acetolactate synthase/5S ribosomal RNA |
| RA | 775,414 | C→T | intergenic (‑176/‑282) | RPPX_03375 ← / → RPPX_03380 | 16S ribosomal RNA/membrane protein |
| RA | 775,456 | G→A | intergenic (‑218/‑240) | RPPX_03375 ← / → RPPX_03380 | 16S ribosomal RNA/membrane protein |
| RA | 775,486 | G→A | intergenic (‑248/‑210) | RPPX_03375 ← / → RPPX_03380 | 16S ribosomal RNA/membrane protein |
| RA | 775,488 | G→C | intergenic (‑250/‑208) | RPPX_03375 ← / → RPPX_03380 | 16S ribosomal RNA/membrane protein |
| RA | 994,351 | C→T | T400I (ACC→ATC) | RPPX_04355 → | RNA polymerase factor sigma‑54 |
| RA | 1,019,345 | T→C | T334A (ACC→GCC) | RPPX_04480 ← | aromatic amino acid transporter |
| RA | 1,133,174 | A→G | D243G (GAC→GGC) | RPPX_05020 → | tRNA 2‑selenouridine synthase |
| RA | 1,154,773 | 2 bp→GG | coding (1473‑1474/2580 nt) | RPPX_05115 → | hypothetical protein |
| RA | 1,155,980 | A→T | T23S (ACC→TCT) | RPPX_05120 → | hypothetical protein |
| RA | 1,155,982 | C→T | T23S (ACC→TCT) | RPPX_05120 → | hypothetical protein |
| RA | 1,158,307 | G→A | intergenic (+1830/‑13453) | RPPX_05120 → / → RPPX_05130 | hypothetical protein/channel protein TolC |
| RA | 1,158,399 | G→C | intergenic (+1922/‑13361) | RPPX_05120 → / → RPPX_05130 | hypothetical protein/channel protein TolC |
| RA | 1,158,403 | A→G | intergenic (+1926/‑13357) | RPPX_05120 → / → RPPX_05130 | hypothetical protein/channel protein TolC |
| RA | 1,159,719 | T→A | intergenic (+3242/‑12041) | RPPX_05120 → / → RPPX_05130 | hypothetical protein/channel protein TolC |
| RA | 1,160,779 | C→T | intergenic (+4302/‑10981) | RPPX_05120 → / → RPPX_05130 | hypothetical protein/channel protein TolC |
| RA | 1,160,785 | T→C | intergenic (+4308/‑10975) | RPPX_05120 → / → RPPX_05130 | hypothetical protein/channel protein TolC |
| RA | 1,174,412 | A→G | D407G (GAT→GGT) | RPPX_05135 → | ATP‑binding protein |
| RA | 1,208,862 | (C)9→8 | coding (661/693 nt) | RPPX_05305 ← | histidine kinase |
| RA | 1,247,078 | G→C | intergenic (‑212/‑599) | RPPX_05495 ← / → RPPX_05500 | glutamyl‑tRNA reductase/hypothetical protein |
| RA | 1,247,115 | 2 bp→T | intergenic (‑249/‑561) | RPPX_05495 ← / → RPPX_05500 | glutamyl‑tRNA reductase/hypothetical protein |
| MC JC | 1,303,424 | Δ2,602 bp | ISS12‑mediated | RPPX_05775–RPPX_05780 | RPPX_05775, RPPX_05780 |
| MC JC | 1,343,208 | Δ2,581 bp | RPPX_05930–RPPX_05935 | RPPX_05930, RPPX_05935 | |
| RA | 1,346,042 | 2 bp→GT | intergenic (+365/+561) | RPPX_05935 → / ← RPPX_05940 | ATPase AAA/DNA‑binding protein |
| RA | 1,358,374 | G→T | intergenic (+235/+2455) | RPPX_05970 → / ← RPPX_05980 | hypothetical protein/tRNA‑Thr |
| RA | 1,358,392 | C→A | intergenic (+253/+2437) | RPPX_05970 → / ← RPPX_05980 | hypothetical protein/tRNA‑Thr |
| RA | 1,358,394 | T→A | intergenic (+255/+2435) | RPPX_05970 → / ← RPPX_05980 | hypothetical protein/tRNA‑Thr |
| RA | 1,358,424 | 2 bp→TC | intergenic (+285/+2404) | RPPX_05970 → / ← RPPX_05980 | hypothetical protein/tRNA‑Thr |
| RA | 1,358,523 | C→A | intergenic (+384/+2306) | RPPX_05970 → / ← RPPX_05980 | hypothetical protein/tRNA‑Thr |
| RA | 1,444,631 | C→T | D26N (GAC→AAC) | RPPX_06380 ← | NUDIX hydrolase |
| RA | 1,449,631 | T→C | intergenic (+144/‑45) | RPPX_06395 → / → RPPX_06400 | chemotaxis protein/thiol:disulfide interchange protein |
| RA | 1,490,016 | G→A | intergenic (+31/‑317) | RPPX_06570 → / → RPPX_06575 | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase/TonB‑dependent receptor |
| RA | 1,490,020 | G→C | intergenic (+35/‑313) | RPPX_06570 → / → RPPX_06575 | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase/TonB‑dependent receptor |
| RA | 1,493,312 | G→A | G34G (GGC→GGT) | RPPX_06585 ← | MFS transporter |
| MC JC | 1,508,761 | Δ2,603 bp | RPPX_06690–RPPX_06695 | RPPX_06690, RPPX_06695 | |
| RA | 1,533,023 | A→G | K446R (AAG→AGG) | RPPX_06795 → | GntR family transcriptional regulator |
| RA | 1,541,228 | T→C | N196S (AAC→AGC) | RPPX_06830 ← | DNA‑directed RNA polymerase subunit alpha |
| RA | 1,554,345 | A→T | V354V (GTT→GTA) | tuf ← | elongation factor Tu |
| RA | 1,554,630 | A→G | C259C (TGT→TGC) | tuf ← | elongation factor Tu |
| RA | 1,554,729 | C→A | G226G (GGG→GGT) | tuf ← | elongation factor Tu |
| RA | 1,554,744 | T→C | V221V (GTA→GTG) | tuf ← | elongation factor Tu |
| RA | 1,554,990 | A→G | D139D (GAT→GAC) | tuf ← | elongation factor Tu |
| RA | 1,555,277 | T→C | I44V (ATC→GTC) | tuf ← | elongation factor Tu |
| RA | 1,555,302 | A→G | V35V (GTT→GTC) | tuf ← | elongation factor Tu |
| RA | 1,562,838 | T→C | N45S (AAC→AGC) | RPPX_06985 ← | DNA‑directed RNA polymerase subunit beta' |
| RA | 1,586,415 | G→A | G53S (GGC→AGC) | RPPX_07115 → | membrane protein |
| RA | 1,611,819 | C→T | G121S (GGC→AGC) | RPPX_07240 ← | aminoglycoside phosphotransferase |
| RA | 1,629,612 | G→A | intergenic (+47/‑259) | rpsU → / → RPPX_07325 | 30S ribosomal protein S21/DNA primase |
| RA | 1,639,093 | G→A | A18T (GCC→ACC) | RPPX_07350 → | AsnC family transcriptional regulator |
| RA | 1,654,943 | G→A | A22A (GCC→GCT) | RPPX_07410 ← | acyl‑CoA dehydrogenase |
| RA | 1,657,996 | G→A | A200A (GCC→GCT) | RPPX_07420 ← | acyl‑CoA dehydrogenase |
| MC JC | 1,658,613 | Δ1,195 bp | RPPX_07425 | RPPX_07425 | |
| RA | 1,662,344 | G→A | L160L (CTG→TTG) | RPPX_07445 ← | transporter |
| RA | 1,678,037 | C→T | L212L (CTC→CTT) | RPPX_07515 → | TonB‑dependent receptor |
| RA | 1,796,148 | C→T | Y243Y (TAC→TAT) | RPPX_08005 → | integrase |
| RA | 1,896,148 | T→C | intergenic (‑3926/‑4671) | RPPX_08470 ← / → RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| RA | 1,896,150 | C→G | intergenic (‑3928/‑4669) | RPPX_08470 ← / → RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| RA | 1,897,249 | G→A | intergenic (‑5027/‑3570) | RPPX_08470 ← / → RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| RA | 1,897,594 | G→C | intergenic (‑5372/‑3225) | RPPX_08470 ← / → RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| RA | 1,897,654 | T→C | intergenic (‑5432/‑3165) | RPPX_08470 ← / → RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| RA | 1,897,666 | G→A | intergenic (‑5444/‑3153) | RPPX_08470 ← / → RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| RA | 1,897,669 | A→G | intergenic (‑5447/‑3150) | RPPX_08470 ← / → RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| RA | 1,897,916 | 2 bp→CT | intergenic (‑5694/‑2902) | RPPX_08470 ← / → RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| RA | 1,897,927 | A→G | intergenic (‑5705/‑2892) | RPPX_08470 ← / → RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| RA | 1,897,951 | G→T | intergenic (‑5729/‑2868) | RPPX_08470 ← / → RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| MC JC | 1,901,507 | Δ2,603 bp | [RPPX_08485]–RPPX_08495 | [RPPX_08485], RPPX_08490, RPPX_08495 | |
| RA | 1,915,165 | T→C | intergenic (+54/+14) | RPPX_08535 → / ← RPPX_08540 | ferrioxamine B receptor/5S ribosomal RNA |
| RA | 1,915,170 | Δ1 bp | intergenic (+59/+9) | RPPX_08535 → / ← RPPX_08540 | ferrioxamine B receptor/5S ribosomal RNA |
| RA | 1,915,172 | 3 bp→GTT | intergenic (+61/+5) | RPPX_08535 → / ← RPPX_08540 | ferrioxamine B receptor/5S ribosomal RNA |
| RA | 1,915,245 | A→G | noncoding (50/116 nt) | RPPX_08540 ← | 5S ribosomal RNA |
| RA | 1,920,735 | T→C | intergenic (‑364/+191) | RPPX_08560 ← / ← RPPX_08565 | 16S ribosomal RNA/CoA‑transferase |
| RA | 1,920,738 | T→C | intergenic (‑367/+188) | RPPX_08560 ← / ← RPPX_08565 | 16S ribosomal RNA/CoA‑transferase |
| RA | 1,920,747 | T→C | intergenic (‑376/+179) | RPPX_08560 ← / ← RPPX_08565 | 16S ribosomal RNA/CoA‑transferase |
| RA | 1,920,749 | A→C | intergenic (‑378/+177) | RPPX_08560 ← / ← RPPX_08565 | 16S ribosomal RNA/CoA‑transferase |
| RA | 1,920,754 | 1 bp→TTT | intergenic (‑383/+172) | RPPX_08560 ← / ← RPPX_08565 | 16S ribosomal RNA/CoA‑transferase |
| RA | 1,920,761 | Δ1 bp | intergenic (‑390/+165) | RPPX_08560 ← / ← RPPX_08565 | 16S ribosomal RNA/CoA‑transferase |
| RA | 1,920,763 | A→C | intergenic (‑392/+163) | RPPX_08560 ← / ← RPPX_08565 | 16S ribosomal RNA/CoA‑transferase |
| RA | 1,920,765 | 2 bp→AC | intergenic (‑394/+160) | RPPX_08560 ← / ← RPPX_08565 | 16S ribosomal RNA/CoA‑transferase |
| RA | 1,920,794 | G→T | intergenic (‑423/+132) | RPPX_08560 ← / ← RPPX_08565 | 16S ribosomal RNA/CoA‑transferase |
| RA | 1,920,803 | T→A | intergenic (‑432/+123) | RPPX_08560 ← / ← RPPX_08565 | 16S ribosomal RNA/CoA‑transferase |
| RA | 1,984,399 | T→C | intergenic (+229/+55) | RPPX_08865 → / ← RPPX_08870 | hypothetical protein/SulP family inorganic anion transporter |
| RA | 2,069,253 | T→C | Q252R (CAG→CGG) | RPPX_09275 ← | hypothetical protein |
| RA | 2,119,132 | (G)5→4 | coding (622/873 nt) | RPPX_09480 → | chromosome partitioning protein ParB |
| RA | 2,119,429 | T→C | intergenic (+46/‑104) | RPPX_09480 → / → RPPX_09485 | chromosome partitioning protein ParB/ATP synthase F0F1 subunit I |
| RA | 2,336,379 | (C)10→9 | intergenic (‑343/+12) | RPPX_10460 ← / ← RPPX_10465 | EVE domain protein/5‑formyltetrahydrofolate cyclo‑ligase |
| RA | 2,341,088 | A→G | D394G (GAT→GGT) | RPPX_10490 → | 2‑octaprenyl‑6‑methoxyphenyl hydroxylase |
| RA | 2,393,876 | C→T | G294D (GGT→GAT) | RPPX_10725 ← | 3‑phosphoglycerate dehydrogenase |
| RA | 2,501,911 | C→T | G326D (GGC→GAC) | RPPX_11190 ← | betaine‑aldehyde dehydrogenase |
| MC JC | 2,509,653 | Δ2,602 bp | RPPX_11210–[RPPX_11220] | RPPX_11210, RPPX_11215, [RPPX_11220] | |
| RA | 2,515,527 | (G)8→9 | coding (1910/4668 nt) | RPPX_11225 → | hypothetical protein |
| RA | 2,551,216 | (G)9→10 | coding (167/1206 nt) | RPPX_11370 → | imidazolonepropionase |
| RA | 2,571,914 | G→A | P197S (CCG→TCG) | ubiE ← | ubiquinone biosynthesis methyltransferase UbiE |
| RA | 2,634,717 | (C)6→7 | coding (35/501 nt) | RPPX_11730 → | metal‑dependent hydrolase |
| RA | 2,672,064 | C→T | G249E (GGG→GAG) | RPPX_11870 ← | FAD‑dependent oxidoreductase |
| RA | 2,680,048 | G→A | A189T (GCC→ACC) | RPPX_11900 → | nitrate reductase |
| RA | 2,706,246 | +C | coding (232/1899 nt) | mutL → | DNA mismatch repair protein |
| RA | 2,738,435 | C→T | Y216Y (TAC→TAT) | RPPX_12165 → | benzene 1,2‑dioxygenase |
| RA | 2,738,438 | C→T | H217H (CAC→CAT) | RPPX_12165 → | benzene 1,2‑dioxygenase |
| RA | 2,738,441 | A→T | V218V (GTA→GTT) | RPPX_12165 → | benzene 1,2‑dioxygenase |
| RA | 2,738,465 | T→C | A226A (GCT→GCC) | RPPX_12165 → | benzene 1,2‑dioxygenase |
| RA | 2,738,471 | C→T | T228T (ACC→ACT) | RPPX_12165 → | benzene 1,2‑dioxygenase |
| RA | 2,738,498 | G→A | A237A (GCG→GCA) | RPPX_12165 → | benzene 1,2‑dioxygenase |
| RA | 2,738,501 | T→C | G238G (GGT→GGC) | RPPX_12165 → | benzene 1,2‑dioxygenase |
| RA | 2,738,507 | G→A | E240E (GAG→GAA) | RPPX_12165 → | benzene 1,2‑dioxygenase |
| RA | 2,738,513 | G→A | K242K (AAG→AAA) | RPPX_12165 → | benzene 1,2‑dioxygenase |
| RA | 2,738,522 | T→C | S245S (AGT→AGC) | RPPX_12165 → | benzene 1,2‑dioxygenase |
| RA | 2,738,525 | T→C | A246A (GCT→GCC) | RPPX_12165 → | benzene 1,2‑dioxygenase |
| RA | 2,738,529 | G→T | A248S (GCC→TCT) | RPPX_12165 → | benzene 1,2‑dioxygenase |
| RA | 2,738,531 | C→T | A248S (GCC→TCT) | RPPX_12165 → | benzene 1,2‑dioxygenase |
| RA | 2,738,537 | C→T | A250A (GCC→GCT) | RPPX_12165 → | benzene 1,2‑dioxygenase |
| RA | 2,738,546 | C→T | G253G (GGC→GGT) | RPPX_12165 → | benzene 1,2‑dioxygenase |
| RA | 2,738,549 | C→T | G254G (GGC→GGT) | RPPX_12165 → | benzene 1,2‑dioxygenase |
| MC JC | 2,747,118 | Δ2,603 bp | [RPPX_12205]–[RPPX_12220] | [RPPX_12205], RPPX_12210, RPPX_12215, [RPPX_12220] | |
| MC JC | 2,756,352 | Δ2,603 bp | [RPPX_12250]–RPPX_12260 | [RPPX_12250], RPPX_12255, RPPX_12260 | |
| MC JC | 2,767,372 | Δ2,604 bp | RPPX_12300–RPPX_12305 | RPPX_12300, RPPX_12305 | |
| JC | 2,783,938 | (CTTGCGTT)7→8 | intergenic (+386/‑55) | RPPX_12345 → / → RPPX_12350 | hypothetical protein/hypothetical protein |
| RA | 2,867,069 | G→A | intergenic (‑156/+60) | RPPX_12750 ← / ← RPPX_12755 | lipoyl synthase/DNA polymerase III subunit delta |
| RA | 2,899,147 | T→C | V329A (GTG→GCG) | RPPX_12905 → | DEAD/DEAH box helicase |
| RA | 2,900,811 | A→G | P9P (CCT→CCC) | RPPX_12910 ← | NAD(FAD)‑utilizing dehydrogenase |
| RA | 2,910,161 | T→C | intergenic (+65/‑594) | gudD → / → RPPX_12965 | glucarate dehydratase/GABA permease |
| RA | 2,910,232 | T→C | intergenic (+136/‑523) | gudD → / → RPPX_12965 | glucarate dehydratase/GABA permease |
| RA | 2,910,258 | A→G | intergenic (+162/‑497) | gudD → / → RPPX_12965 | glucarate dehydratase/GABA permease |
| MC JC | 2,913,100 | Δ2,603 bp | RPPX_12970–[RPPX_12980] | RPPX_12970, RPPX_12975, [RPPX_12980] | |
| RA | 2,947,371 | C→T | A77T (GCT→ACT) | RPPX_13125 ← | hypothetical protein |
| RA | 2,982,223 | T→G | intergenic (‑302/+644) | RPPX_13295 ← / ← RPPX_13300 | integrase/integrase |
| RA | 2,982,248 | T→G | intergenic (‑327/+619) | RPPX_13295 ← / ← RPPX_13300 | integrase/integrase |
| RA | 3,037,787 | C→T | G223D (GGC→GAC) | RPPX_13530 ← | Fis family transcriptional regulator |
| RA | 3,078,587 | (G)6→7 | coding (983/1272 nt) | RPPX_13690 → | DeoR faimly transcriptional regulator |
| RA | 3,082,964 | (G)6→7 | coding (842/888 nt) | RPPX_13710 → | 3‑hydroxyisobutyrate dehydrogenase |
| RA | 3,090,679 | C→T | intergenic (+11/+128) | RPPX_13755 → / ← RPPX_13760 | gamma‑glutamyltranspeptidase/chemotaxis protein |
| RA | 3,128,011 | (G)8→7 | intergenic (+144/‑182) | RPPX_13940 → / → RPPX_13945 | alpha/beta hydrolase/hypothetical protein |
| RA | 3,161,709 | T→C | intergenic (+115/+136) | RPPX_14090 → / ← RPPX_14095 | RND transporter/short‑chain dehydrogenase |
| RA | 3,230,201 | C→T | A23V (GCC→GTC) | RPPX_14410 → | cell division protein FtsQ |
| RA | 3,278,038 | C→T | T278I (ACC→ATC) | RPPX_14610 → | 3‑carboxy‑cis,cis‑muconate cycloisomerase |
| RA | 3,284,151 | A→G | V900A (GTG→GCG) | RPPX_14640 ← | multidrug transporter |
| RA | 3,288,402 | (G)6→7 | coding (139/633 nt) | RPPX_14650 → | TetR family transcriptional regulator |
| RA | 3,297,191 | +G | coding (158/921 nt) | RPPX_14685 ← | AraC family transcriptional regulator |
| RA | 3,297,192 | T→G | T53P (ACC→CCC) | RPPX_14685 ← | AraC family transcriptional regulator |
| RA | 3,400,067 | A→G | Q266Q (CAA→CAG) | RPPX_15160 → | chemotaxis protein |
| RA | 3,400,410 | A→G | T381A (ACC→GCC) | RPPX_15160 → | chemotaxis protein |
| RA | 3,406,966 | +T | intergenic (+325/‑1049) | RPPX_15185 → / → RPPX_15195 | chemotaxis protein CheY/peptide chain release factor 2 |
| RA | 3,433,484 | A→G | Y386H (TAC→CAC) | RPPX_15320 ← | glycerol‑3‑phosphate acyltransferase |
| MC JC | 3,486,773 | Δ2,604 bp | RPPX_15555–RPPX_15560 | RPPX_15555, RPPX_15560 | |
| MC JC | 3,503,916 | Δ2,603 bp | RPPX_15645–RPPX_15650 | RPPX_15645, RPPX_15650 | |
| RA | 3,514,540 | (G)6→7 | coding (316/2754 nt) | RPPX_15700 ← | chemotaxis protein CheY |
| RA | 3,523,212 | C→T | A110V (GCC→GTC) | RPPX_15735 → | nucleoprotein/polynucleotide‑associated enzyme |
| RA | 3,566,025 | T→G | intergenic (‑154/+160) | RPPX_15935 ← / ← RPPX_15940 | molecular chaperone/recombinase RdgC |
| RA | 3,566,031 | C→G | intergenic (‑160/+154) | RPPX_15935 ← / ← RPPX_15940 | molecular chaperone/recombinase RdgC |
| RA | 3,566,083 | C→T | intergenic (‑212/+102) | RPPX_15935 ← / ← RPPX_15940 | molecular chaperone/recombinase RdgC |
| RA | 3,585,070 | C→G | intergenic (+210/+13) | RPPX_16020 → / ← RPPX_16025 | hypothetical protein/diguanylate phosphodiesterase |
| RA | 3,673,509 | C→T | intergenic (+108/‑429) | RPPX_16400 → / → RPPX_16405 | glucose‑1‑phosphate thymidylyltransferase/beta‑ketoacyl synthase |
| RA | 3,676,114 | A→G | Y726C (TAC→TGC) | RPPX_16405 → | beta‑ketoacyl synthase |
| RA | 3,721,374 | A→G | intergenic (+316/+51) | RPPX_16570 → / ← RPPX_16575 | glutathione S‑transferase/glutaredoxin |
| RA | 3,733,582 | C→T | intergenic (+30/‑110) | RPPX_16650 → / → RPPX_16655 | hypothetical protein/membrane protein |
| RA | 3,756,661 | T→C | intergenic (+543/+97) | RPPX_16775 → / ← RPPX_16780 | hypothetical protein/phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 3,756,668 | C→G | intergenic (+550/+90) | RPPX_16775 → / ← RPPX_16780 | hypothetical protein/phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 3,793,987 | 2 bp→CC | coding (293‑294/3894 nt) | RPPX_16900 → | YD repeat‑/RHS repeat‑containing protein |
| RA | 3,837,678 | C→T | intergenic (+229/‑322) | RPPX_17095 → / → RPPX_17100 | proteophosphoglycan precursor/cupin |
| RA | 3,837,781 | C→T | intergenic (+332/‑219) | RPPX_17095 → / → RPPX_17100 | proteophosphoglycan precursor/cupin |
| RA | 3,837,790 | T→C | intergenic (+341/‑210) | RPPX_17095 → / → RPPX_17100 | proteophosphoglycan precursor/cupin |
| RA | 3,837,799 | A→G | intergenic (+350/‑201) | RPPX_17095 → / → RPPX_17100 | proteophosphoglycan precursor/cupin |
| RA | 3,842,939 | T→C | R213R (CGT→CGC) | RPPX_17120 → | glutamyl‑tRNA synthetase |
| RA | 3,844,127 | C→T | intergenic (+345/‑1) | RPPX_17120 → / → RPPX_17125 | glutamyl‑tRNA synthetase/tRNA‑Ala |
| RA | 3,848,567 | T→G | D1030A (GAC→GCC) | RPPX_17160 ← | histidine kinase |
| JC | 3,858,455 | (GAAGCAA)5→13 | intergenic (+458/+161) | RPPX_17190 → / ← RPPX_17195 | aspartate‑semialdehyde dehydrogenase/hypothetical protein |
| JC | 3,898,294 | (TGGCCGTCGGGTTGCCGAGGACGGTGCAGACCGACTCAA)1→2 | coding (197/246 nt) | RPPX_17380 → | hypothetical protein |
| RA | 3,929,980 | (G)7→8 | intergenic (‑84/‑145) | RPPX_17505 ← / → RPPX_17510 | ATPase AAA/type IV secretion protein Rhs |
| RA | 3,961,904 | C→T | T416T (ACC→ACT) | RPPX_17635 → | damage‑inducible protein CinA |
| RA | 3,971,951 | G→T | S9S (TCC→TCA) | RPPX_17675 ← | hemolysin D |
| RA | 4,031,017 | Δ1 bp | intergenic (+159/‑625) | RPPX_17905 → / → RPPX_17915 | 23S rRNA methyltransferase/sulfurtransferase |
| RA | 4,132,231 | A→C | intergenic (+147/+82) | RPPX_18375 → / ← RPPX_18380 | membrane protein/phosphonoacetaldehyde hydrolase |
| RA | 4,147,169 | (CTTCTTG)5→6 | intergenic (+421/‑600) | RPPX_18425 → / → RPPX_18430 | enoyl‑CoA hydratase/conjugal transfer protein TraR |
| RA | 4,147,204 | A→G | intergenic (+456/‑565) | RPPX_18425 → / → RPPX_18430 | enoyl‑CoA hydratase/conjugal transfer protein TraR |
| RA | 4,147,209 | A→G | intergenic (+461/‑560) | RPPX_18425 → / → RPPX_18430 | enoyl‑CoA hydratase/conjugal transfer protein TraR |
| RA | 4,147,332 | A→T | intergenic (+584/‑437) | RPPX_18425 → / → RPPX_18430 | enoyl‑CoA hydratase/conjugal transfer protein TraR |
| RA | 4,147,342 | T→C | intergenic (+594/‑427) | RPPX_18425 → / → RPPX_18430 | enoyl‑CoA hydratase/conjugal transfer protein TraR |
| RA | 4,147,416 | C→G | intergenic (+668/‑353) | RPPX_18425 → / → RPPX_18430 | enoyl‑CoA hydratase/conjugal transfer protein TraR |
| RA | 4,147,431 | A→G | intergenic (+683/‑338) | RPPX_18425 → / → RPPX_18430 | enoyl‑CoA hydratase/conjugal transfer protein TraR |
| RA | 4,159,800 | (G)5→6 | coding (474/771 nt) | RPPX_18505 ← | permease |
| RA | 4,165,100 | C→T | intergenic (‑294/‑181) | RPPX_18525 ← / → RPPX_18530 | transporter/16S ribosomal RNA |
| RA | 4,165,105 | G→A | intergenic (‑299/‑176) | RPPX_18525 ← / → RPPX_18530 | transporter/16S ribosomal RNA |
| RA | 4,165,107 | T→C | intergenic (‑301/‑174) | RPPX_18525 ← / → RPPX_18530 | transporter/16S ribosomal RNA |
| RA | 4,165,118 | Δ1 bp | intergenic (‑312/‑163) | RPPX_18525 ← / → RPPX_18530 | transporter/16S ribosomal RNA |
| RA | 4,170,224 | T→C | noncoding (2917/2917 nt) | RPPX_18545 → | 23S ribosomal RNA |
| RA | 4,204,859 | C→T | R398C (CGT→TGT) | RPPX_18715 → | trigger factor |
| RA | 4,258,919 | C→G | intergenic (+132/+99) | prpE → / ← RPPX_18965 | propionyl‑CoA synthetase/ATPase |
| RA | 4,286,522 | C→T | intergenic (+378/+266) | RPPX_19070 → / ← RPPX_19075 | LacI family transcriptional regulator/hypothetical protein |
| RA | 4,363,550 | T→C | intergenic (+206/‑109) | RPPX_19410 → / → RPPX_19415 | alkyl hydroperoxide reductase/hypothetical protein |
| MC JC | 4,425,765 | Δ2,602 bp | RPPX_19815–RPPX_19820 | RPPX_19815, RPPX_19820 | |
| RA | 4,449,214 | (G)7→8 | coding (275/555 nt) | RPPX_19925 ← | transcriptional regulator |
| RA | 4,537,108 | A→G | Y105Y (TAT→TAC) | RPPX_20270 ← | hypothetical protein |
| RA | 4,537,135 | C→G | L96L (CTG→CTC) | RPPX_20270 ← | hypothetical protein |
| RA | 4,540,058 | T→C | A592A (GCA→GCG) | RPPX_20280 ← | hypothetical protein |
| RA | 4,540,457 | A→G | R459R (CGT→CGC) | RPPX_20280 ← | hypothetical protein |
| RA | 4,540,460 | C→T | R458R (CGG→CGA) | RPPX_20280 ← | hypothetical protein |
| RA | 4,541,504 | C→T | L110L (CTG→CTA) | RPPX_20280 ← | hypothetical protein |
| RA | 4,541,636 | C→T | P66P (CCG→CCA) | RPPX_20280 ← | hypothetical protein |
| RA | 4,541,648 | A→G | R62R (CGT→CGC) | RPPX_20280 ← | hypothetical protein |
| RA | 4,543,770 | A→G | A451A (GCT→GCC) | RPPX_20290 ← | hypothetical protein |
| RA | 4,543,776 | C→G | K449N (AAG→AAC) | RPPX_20290 ← | hypothetical protein |
| RA | 4,543,787 | G→A | L446L (CTA→TTA) | RPPX_20290 ← | hypothetical protein |
| RA | 4,543,809 | C→T | A438A (GCG→GCA) | RPPX_20290 ← | hypothetical protein |
| RA | 4,543,833 | C→G | S430S (TCG→TCC) | RPPX_20290 ← | hypothetical protein |
| RA | 4,544,682 | T→G | S147S (TCA→TCC) | RPPX_20290 ← | hypothetical protein |
| RA | 4,544,703 | G→A | P140P (CCC→CCT) | RPPX_20290 ← | hypothetical protein |
| RA | 4,544,907 | T→C | T72T (ACA→ACG) | RPPX_20290 ← | hypothetical protein |
| RA | 4,631,683 | G→A | intergenic (+245/‑585) | emrB → / → RPPX_20645 | multidrug resistance protein B/oxidoreductase |
| RA | 4,631,689 | Δ1 bp | intergenic (+251/‑579) | emrB → / → RPPX_20645 | multidrug resistance protein B/oxidoreductase |
| RA | 4,632,092 | C→G | intergenic (+654/‑176) | emrB → / → RPPX_20645 | multidrug resistance protein B/oxidoreductase |
| RA | 4,632,096 | G→C | intergenic (+658/‑172) | emrB → / → RPPX_20645 | multidrug resistance protein B/oxidoreductase |
| RA | 4,651,471 | A→G | G393G (GGT→GGC) | RPPX_20730 ← | 5,10‑methylene tetrahydromethanopterin reductase |
| RA | 4,697,192 | (G)5→6 | coding (283/1977 nt) | RPPX_20915 → | cytochrome D1 |
| RA | 4,728,247 | G→A | G159D (GGC→GAC) | RPPX_21060 → | quinohemoprotein amine dehydrogenase |
| RA | 4,821,273 | (G)6→7 | coding (1032/1263 nt) | RPPX_21445 → | histidine kinase |
| MC JC | 4,905,871 | Δ2,603 bp | RPPX_21790–RPPX_21795 | RPPX_21790, RPPX_21795 | |
| RA | 4,916,154 | A→G | F315L (TTC→CTC) | RPPX_21810 ← | hypothetical protein |
| RA | 4,957,158 | C→G | V197V (GTC→GTG) | RPPX_21945 → | ATPase AAA |
| RA | 4,957,179 | C→T | D204D (GAC→GAT) | RPPX_21945 → | ATPase AAA |
| RA | 4,957,191 | G→A | A208A (GCG→GCA) | RPPX_21945 → | ATPase AAA |
| RA | 4,957,218 | C→T | D217D (GAC→GAT) | RPPX_21945 → | ATPase AAA |
| RA | 4,957,233 | 2 bp→GT | coding (666‑667/756 nt) | RPPX_21945 → | ATPase AAA |
| RA | 5,007,281 | A→T | Y68F (TAC→TTC) | RPPX_22185 → | phenylacetate‑‑CoA ligase |
| RA | 5,007,303 | T→C | D75D (GAT→GAC) | RPPX_22185 → | phenylacetate‑‑CoA ligase |
| RA | 5,007,323 | T→A | F82Y (TTC→TAC) | RPPX_22185 → | phenylacetate‑‑CoA ligase |
| RA | 5,007,375 | C→T | S99S (AGC→AGT) | RPPX_22185 → | phenylacetate‑‑CoA ligase |
| RA | 5,031,155 | (C)8→9 | coding (721/822 nt) | RPPX_22315 ← | DNA repair protein |
| RA | 5,105,351 | T→C | P167P (CCA→CCG) | RPPX_22650 ← | benzene 1,2‑dioxygenase |
| RA | 5,105,354 | T→C | K166K (AAA→AAG) | RPPX_22650 ← | benzene 1,2‑dioxygenase |
| RA | 5,105,366 | A→G | N162N (AAT→AAC) | RPPX_22650 ← | benzene 1,2‑dioxygenase |
| RA | 5,105,372 | A→G | S160S (AGT→AGC) | RPPX_22650 ← | benzene 1,2‑dioxygenase |
| RA | 5,105,378 | A→G | F158F (TTT→TTC) | RPPX_22650 ← | benzene 1,2‑dioxygenase |
| RA | 5,105,383 | 2 bp→AA | coding (468‑469/1359 nt) | RPPX_22650 ← | benzene 1,2‑dioxygenase |
| RA | 5,105,402 | G→A | F150F (TTC→TTT) | RPPX_22650 ← | benzene 1,2‑dioxygenase |
| RA | 5,105,405 | T→A | R149R (CGA→CGT) | RPPX_22650 ← | benzene 1,2‑dioxygenase |
| RA | 5,134,626 | T→C | T170A (ACG→GCG) | RPPX_22775 ← | serine acetyltransferase |
| RA | 5,154,888 | T→C | V78A (GTC→GCC) | RPPX_22865 → | oxidoreductase |
| RA | 5,157,352 | C→T | intergenic (+178/+65) | RPPX_22875 → / ← dnaE2 | integrase/DNA polymerase |
| RA | 5,305,850 | A→G | I115V (ATA→GTA) | RPPX_23590 → | leucyl‑tRNA synthetase |
| JC JC | 5,368,061 | +T :: ISS12 (+) +7 bp | coding (574‑580/831 nt) | RPPX_23905 ← | UDP pyrophosphate phosphatase |
| RA | 5,417,945 | G→A | S870S (AGC→AGT) | RPPX_24130 ← | pyridoxalphosphate dependent aminotransferase |
| RA | 5,426,639 | T→C | V332V (GTA→GTG) | RPPX_24160 ← | damage‑inducible protein CinA |
| RA | 5,513,866 | G→A | A266V (GCA→GTA) | RPPX_24600 ← | integrase |
| RA | 5,513,872 | T→C | Q264R (CAG→CGG) | RPPX_24600 ← | integrase |
| RA | 5,515,235 | A→G | intergenic (‑22/+120) | RPPX_24605 ← / ← RPPX_24610 | transposase/hypothetical protein |
| RA | 5,523,283 | A→G | S74P (TCG→CCG) | RPPX_24660 ← | hydratase |
| RA | 5,587,720 | A→G | E294E (GAA→GAG) | RPPX_24875 → | type VI secretion protein |
| RA | 5,595,092 | T→C | intergenic (+724/‑188) | RPPX_24905 → / → RPPX_24915 | type VI secretion protein VgrG/hypothetical protein |
| RA | 5,595,953 | T→C | L225P (CTC→CCC) | RPPX_24915 → | hypothetical protein |
| RA | 5,597,121 | C→T | T614T (ACC→ACT) | RPPX_24915 → | hypothetical protein |
| RA | 5,597,130 | T→C | R617R (CGT→CGC) | RPPX_24915 → | hypothetical protein |
| RA | 5,603,289 | G→A | E339K (GAA→AAA) | RPPX_24935 → | isoquinoline 1‑oxidoreductase |
| RA | 5,704,352 | (G)12→11 | intergenic (‑292/+172) | RPPX_25370 ← / ← RPPX_25375 | GntR family transcriptional regulator/porin |
| MC MC JC | 5,798,527 | Δ2,603 bp | intergenic (‑15/–) | RPPX_25885 ← / – | integrase/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009974 | 341127–341386 | 342317 | 932–1191 | 176 [174] | [173] 176 | RPPX_01355/RPPX_01370 | cytochrome C oxidase/cbb3‑type cytochrome c oxidase subunit I |
| * | * | ÷ | CP009974 | 1155614 | 1155782 | 169 | 176 [164] | [3] 565 | RPPX_05115 | hypothetical protein |
| * | * | ÷ | CP009974 | 1156053 | 1156261 | 209 | 356 [4] | [174] 176 | RPPX_05120 | hypothetical protein |
| * | * | ÷ | CP009974 | 1156367 | 1157206 | 840 | 316 [20] | [0] 628 | [RPPX_05120] | [RPPX_05120] |
| * | * | ÷ | CP009974 | 1157288 | 1158144–1157500 | 213–857 | 178 [167] | [173] 175 | RPPX_05120/RPPX_05130 | hypothetical protein/channel protein TolC |
| * | * | ÷ | CP009974 | 1896578–1897071 | 1897159–1897127 | 57–582 | 176 [170] | [170] 188 | RPPX_08470/RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| * | * | ÷ | CP009974 | 5324682 | 5328651–5327261 | 2580–3970 | 309 [0] | [173] 176 | RPPX_23675–[RPPX_23690] | RPPX_23675,RPPX_23680,RPPX_23685,[RPPX_23690] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009974 | 769996 = | NA (NA) | 137 (0.780) +50 bp |
86/200 | 1.7 | NA | intergenic (‑418/+50) | RPPX_03350/RPPX_03355 | acetolactate synthase/5S ribosomal RNA |
| ? | CP009974 | = 770170 | NA (NA) | intergenic (‑9/+117) | RPPX_03355/RPPX_03360 | 5S ribosomal RNA/23S ribosomal RNA | |||||
| * | ? | CP009974 | 884033 = | 116 (0.440) | 179 (0.910) +38 bp |
114/224 | 0.5 | 66.9% | intergenic (+81/+252) | RPPX_03845/RPPX_03850 | FAD‑binding protein/general secretion pathway protein GspN |
| ? | CP009974 | = 884084 | 122 (0.460) | intergenic (+132/+201) | RPPX_03845/RPPX_03850 | FAD‑binding protein/general secretion pathway protein GspN | |||||
| * | ? | CP009974 | 1154348 = | NA (NA) | 178 (0.980) +46 bp |
85/208 | 2.3 | 56.5% | coding (1048/2580 nt) | RPPX_05115 | hypothetical protein |
| ? | CP009974 | = 1155588 | 198 (0.750) | coding (2288/2580 nt) | RPPX_05115 | hypothetical protein | |||||
| * | ? | CP009974 | 1154348 = | NA (NA) | 192 (0.970) +37 bp |
100/226 | 1.5 | 58.3% | coding (1048/2580 nt) | RPPX_05115 | hypothetical protein |
| ? | CP009974 | = 1155597 | 183 (0.700) | coding (2297/2580 nt) | RPPX_05115 | hypothetical protein | |||||
| * | ? | CP009974 | 1154854 = | 263 (1.000) | 424 (2.270) +43 bp |
156/214 | 0.0 | 81.8% | coding (1554/2580 nt) | RPPX_05115 | hypothetical protein |
| ? | CP009974 | 1155783 = | 3 (0.010) | coding (2483/2580 nt) | RPPX_05115 | hypothetical protein | |||||
| * | ? | CP009974 | = 1155303 | 421 (1.600) | 280 (1.130) | 172/282 | 0.0 | 58.6% | coding (2003/2580 nt) | RPPX_05115 | hypothetical protein |
| ? | CP009974 | = 1156366 | 0 (0.000) | coding (453/564 nt) | RPPX_05120 | hypothetical protein | |||||
| * | ? | CP009974 | 1155488 = | 293 (1.110) | 314 (1.350) +AGGGTCCAGGGTGATGG |
122/266 | 1.3 | 70.8% | coding (2188/2580 nt) | RPPX_05115 | hypothetical protein |
| ? | CP009974 | = 1156052 | 0 (0.000) | coding (139/564 nt) | RPPX_05120 | hypothetical protein | |||||
| * | ? | CP009974 | 1155977 = | 0 (0.000) | 322 (1.660) +39 bp |
122/222 | 0.2 | 77.5% | coding (64/564 nt) | RPPX_05120 | hypothetical protein |
| ? | CP009974 | = 1158685 | 253 (0.960) | intergenic (+2208/‑13075) | RPPX_05120/RPPX_05130 | hypothetical protein/channel protein TolC | |||||
| * | ? | CP009974 | 1157207 = | 0 (0.000) | 269 (1.880) | 73/164 | 1.3 | 100% | intergenic (+730/‑14553) | RPPX_05120/RPPX_05130 | hypothetical protein/channel protein TolC |
| ? | CP009974 | = 1158025 | NA (NA) | intergenic (+1548/‑13735) | RPPX_05120/RPPX_05130 | hypothetical protein/channel protein TolC | |||||
| * | ? | CP009974 | 1277572 = | 274 (1.040) | 176 (0.780) | 108/258 | 2.2 | 42.8% | intergenic (+41/+197) | RPPX_05635/RPPX_05640 | aldehyde dehydrogenase/mechanosensitive ion channel protein MscS |
| ? | CP009974 | = 1277722 | 236 (1.040) | intergenic (+191/+47) | RPPX_05635/RPPX_05640 | aldehyde dehydrogenase/mechanosensitive ion channel protein MscS | |||||
| * | ? | CP009974 | = 1897294 | NA (NA) | 854 (3.360) | 211/290 | 0.0 | 98.2% | intergenic (‑5072/‑3525) | RPPX_08470/RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| ? | CP009974 | 1897952 = | 16 (0.060) | intergenic (‑5730/‑2867) | RPPX_08470/RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein | |||||
| * | ? | CP009974 | = 1897308 | 16 (0.060) | 563 (2.260) | 124/284 | 1.8 | 98.1% | intergenic (‑5086/‑3511) | RPPX_08470/RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| ? | CP009974 | 1897966 = | 7 (0.030) | intergenic (‑5744/‑2853) | RPPX_08470/RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein | |||||
| * | ? | CP009974 | 1897973 = | 30 (0.110) | 648 (2.850) | 168/260 | 0.0 | 96.2% | intergenic (‑5751/‑2846) | RPPX_08470/RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| ? | CP009974 | = 1898647 | NA (NA) | intergenic (‑6425/‑2172) | RPPX_08470/RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein | |||||
| * | ? | CP009974 | 1898984 = | 132 (0.500) | 506 (2.870) +49 bp |
171/202 | 0.0 | 68.6% | intergenic (‑6762/‑1835) | RPPX_08470/RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| ? | CP009974 | = 1899234 | 558 (2.120) | intergenic (‑7012/‑1585) | RPPX_08470/RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein | |||||
| * | ? | CP009974 | 1898984 = | 132 (0.500) | 889 (3.570) +CGACTCGG |
261/284 | -0.0 | 83.8% | intergenic (‑6762/‑1835) | RPPX_08470/RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein |
| ? | CP009974 | = 1899275 | 232 (0.880) | intergenic (‑7053/‑1544) | RPPX_08470/RPPX_08480 | tryptophan synthase subunit beta/hypothetical protein | |||||
| * | ? | CP009974 | = 3063941 | NA (NA) | 700 (2.830) +TTTTTCCTG |
235/282 | -0.0 | NA | intergenic (+52/‑16) | RPPX_13645/RPPX_13650 | 16S ribosomal RNA/tRNA‑Ile |
| ? | CP009974 | 3064156 = | NA (NA) | intergenic (+23/‑214) | RPPX_13655/RPPX_13660 | tRNA‑Ala/23S ribosomal RNA | |||||
| * | ? | CP009974 | = 3064033 | NA (NA) | 213 (0.840) +ATATG |
137/290 | 1.1 | NA | noncoding (77/77 nt) | RPPX_13650 | tRNA‑Ile |
| ? | CP009974 | 3064057 = | NA (NA) | intergenic (+24/‑1) | RPPX_13650/RPPX_13655 | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | CP009974 | = 3756397 | 193 (0.730) | 250 (1.590) +60 bp |
122/180 | 0.0 | 67.7% | intergenic (+279/+361) | RPPX_16775/RPPX_16780 | hypothetical protein/phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| ? | CP009974 | 4031306 = | 207 (0.790) | intergenic (+448/‑336) | RPPX_17905/RPPX_17915 | 23S rRNA methyltransferase/sulfurtransferase | |||||
| * | ? | CP009974 | = 3756977 | 242 (0.920) | 156 (0.780) +35 bp |
92/230 | 2.6 | 47.6% | coding (1128/1347 nt) | RPPX_16780 | phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| ? | CP009974 | 4030905 = | 206 (0.780) | intergenic (+47/‑737) | RPPX_17905/RPPX_17915 | 23S rRNA methyltransferase/sulfurtransferase | |||||
| * | ? | CP009974 | = 3844204 | 236 (0.900) | 110 (0.720) +63 bp |
73/174 | 1.9 | 44.3% | intergenic (+1/‑42) | RPPX_17125/RPPX_17130 | tRNA‑Ala/tRNA‑Glu |
| ? | CP009974 | 3844237 = | 243 (0.920) | intergenic (+34/‑9) | RPPX_17125/RPPX_17130 | tRNA‑Ala/tRNA‑Glu | |||||
| * | ? | CP009974 | = 5273058 | 0 (0.000) | 240 (0.960) | 144/286 | 0.6 | 100% | intergenic (‑275/+106) | RPPX_23445/RPPX_23450 | transporter/ATPase AAA |
| ? | CP009974 | 5275662 = | 0 (0.000) | coding (38/1266 nt) | RPPX_23460 | GntR family transcriptional regulator | |||||
| * | ? | CP009974 | = 5324681 | 0 (0.000) | 268 (1.070) | 154/286 | 0.3 | 100% | intergenic (+71/‑180) | RPPX_23670/RPPX_23675 | histidine kinase/integrase |
| ? | CP009974 | 5327261 = | NA (NA) | intergenic (+113/‑39) | RPPX_23680/RPPX_23685 | ATPase AAA/transposase | |||||