breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
MC JC 257,908 Δ776 bp insB9[crl] insB9, insA9, [crl]
RA 754,123 C→T E116K (GAG→AAG)  gltA ← citrate synthase
RA 1,148,491 G→T G291C (GGC→TGC)  plsX → putative phosphate acyltransferase
MC JC 1,397,381 Δ13,756 bp [ynaJ][ttcA] 17 genes
RA 1,618,245 A→T *222K (TAA→AAA)  marC ← inner membrane protein MarC
MC JC 1,978,503 Δ776 bp insB5insA5 insB5, insA5
JC JC 2,143,211 IS5 (–) +4 bp intergenic (‑263/‑52) udk ← / → dgcE uridine/cytidine kinase/putative diguanylate cyclase DgcE
RA 2,173,363 Δ2 bp intergenic (‑490/+918) gatD ← / ← gatB galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component
RA 3,560,455 +G intergenic (+589/+167) rtcR → / ← glpG DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG
RA 4,119,044 A→T V96E (GTG→GAG)  rraA ← ribonuclease E inhibitor protein A
RA 4,296,381 +GC intergenic (+587/+55) gltP → / ← yjcO glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ U00096 3423715–3424234 3424597–3424238 5–883 55 [51] [51] 52 [rrfD]–[rrlD] [rrfD],[rrlD]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? U00096 = 12994980 (0.000)180 (1.540) 132/284 0.0 100% intergenic (+253/‑69) ychE/insH21 MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator
?U00096 1300698 = 0 (0.000)intergenic (+151/‑484) insH21/oppA IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein