breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | |||||
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evidence | position | mutation | annotation | gene | description |
MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
RA | 1,307,934 | C→T | G238S (GGC→AGC) | clsA ← | cardiolipin synthase A |
MC JC | 1,397,381 | Δ13,756 bp | [ynaJ]–[ttcA] | 17 genes [ynaJ], uspE, fnr, ogt, abgT, abgB, abgA, abgR, mcaS, smrA, dgcM, ynaN, zntB, fnrS, ynaL, dbpA, [ttcA] |
|
MC JC | 1,618,499 | Δ7 bp | coding (404‑410/666 nt) | marC ← | inner membrane protein MarC |
MC JC | 1,978,503 | Δ776 bp | insB5–insA5 | insB5, insA5 | |
RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
RA | 2,713,364 | G→A | D157N (GAC→AAC) | srmB → | ATP‑dependent RNA helicase SrmB |
MC JC | 3,153,487 | Δ15 bp | intergenic (+64/‑62) | metC → / → yghB | cystathionine beta‑lyase/L‑cysteine desulfhydrase/alanine racemase/DedA family protein YghB |
RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
Unassigned missing coverage evidence | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | U00096 | 3423721–3424234 | 3424613–3424238 | 5–893 | 37 [35] | [36] 37 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
Unassigned new junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | U00096 | 1207790 = | 19 (0.220) | 62 (0.790) | 57/258 | 0.5 | 77.5% | coding (290/630 nt) | ycfK | protein StfP |
? | U00096 | 1209619 = | 19 (0.240) | intergenic (‑500/‑66) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
* | ? | U00096 | = 1207805 | 19 (0.220) | 53 (0.680) | 49/258 | 0.9 | 74.7% | coding (305/630 nt) | ycfK | protein StfP |
? | U00096 | = 1209602 | 19 (0.240) | intergenic (‑483/‑83) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
* | ? | U00096 | = 1299498 | 0 (0.000) | 144 (1.680) | 112/282 | 0.0 | 100% | intergenic (+253/‑69) | ychE/insH21 | MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator |
? | U00096 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein |