breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
MC JC 257,908 Δ776 bp insB9[crl] insB9, insA9, [crl]
RA 1,307,934 C→T G238S (GGC→AGC)  clsA ← cardiolipin synthase A
MC JC 1,397,381 Δ13,756 bp [ynaJ][ttcA] 17 genes
MC JC 1,618,499 Δ7 bp coding (404‑410/666 nt) marC ← inner membrane protein MarC
MC JC 1,978,503 Δ776 bp insB5insA5 insB5, insA5
RA 2,173,363 Δ2 bp intergenic (‑490/+918) gatD ← / ← gatB galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component
RA 2,713,364 G→A D157N (GAC→AAC)  srmB → ATP‑dependent RNA helicase SrmB
MC JC 3,153,487 Δ15 bp intergenic (+64/‑62) metC → / → yghB cystathionine beta‑lyase/L‑cysteine desulfhydrase/alanine racemase/DedA family protein YghB
RA 3,560,455 +G intergenic (+589/+167) rtcR → / ← glpG DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG
RA 4,296,381 +GC intergenic (+587/+55) gltP → / ← yjcO glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ U00096 3423721–3424234 3424613–3424238 5–893 37 [35] [36] 37 [rrfD]–[rrlD] [rrfD],[rrlD]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? U00096 1207790 =19 (0.220)62 (0.790) 57/258 0.5 77.5% coding (290/630 nt) ycfK protein StfP
?U00096 1209619 = 19 (0.240)intergenic (‑500/‑66) tfaE/pinE putative tail fiber assembly protein TfaE/site‑specific DNA recombinase
* ? U00096 = 120780519 (0.220)53 (0.680) 49/258 0.9 74.7% coding (305/630 nt) ycfK protein StfP
?U00096 = 1209602 19 (0.240)intergenic (‑483/‑83) tfaE/pinE putative tail fiber assembly protein TfaE/site‑specific DNA recombinase
* ? U00096 = 12994980 (0.000)144 (1.680) 112/282 0.0 100% intergenic (+253/‑69) ychE/insH21 MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator
?U00096 1300698 = 0 (0.000)intergenic (+151/‑484) insH21/oppA IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein