mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 87,679 | (GCG)4→3 | coding (1442‑1444/1767 nt) | ftsI → | transpeptidase |
| JC | 162,220 | +51 bp | intergenic (+131/+243) | mrcB → / ← hemL | fused glycosyl transferase and transpeptidase/glutamate‑1‑semialdehyde aminotransferase |
| RA | 1,486,241 | G→A | intergenic (‑2088/‑492) | thrS ← / → yniD | threonyl‑tRNA synthetase/predicted protein |
| RA | 2,073,848 | Δ2 bp | intergenic (+106/+161) | lysV → / ← xapR | tRNA‑Lys/DNA‑binding transcriptional activator |
| RA | 2,073,851 | Δ1 bp | intergenic (+109/+159) | lysV → / ← xapR | tRNA‑Lys/DNA‑binding transcriptional activator |
| MC JC | 3,245,072 | Δ82 bp | intergenic (‑91/‑736) | pyrE ← / → yicC | orotate phosphoribosyltransferase/conserved protein |
| RA | 3,716,601 | T→C | intergenic (‑17/‑376) | acs ← / → nrfA | bifunctional acetyl‑CoA synthetase/nitrite reductase, formate‑dependent, cytochrome |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP012306 | 2315787 = | 18 (0.060) | 410 (1.270) | 212/298 | 0.1 | 95.8% | coding (438/1203 nt) | proV | glycine betaine transporter subunit |
| ? | AP012306 | = 2315797 | NA (NA) | coding (448/1203 nt) | proV | glycine betaine transporter subunit | |||||
| * | ? | AP012306 | = 2477888 | 52 (0.160) | 196 (0.660) | 136/272 | 1.1 | 79.6% | coding (1082/2247 nt) | ptsP | fused PEP‑protein phosphotransferase (enzyme I) of PTS system |
| ? | AP012306 | 2478078 = | 53 (0.180) | coding (892/2247 nt) | ptsP | fused PEP‑protein phosphotransferase (enzyme I) of PTS system | |||||