mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutation | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 1,003,919 | G→T | N52K (AAC→AAA) | ompF ← | porin OmpF |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_012967 | 2035100 | 2043254 | 8155 | 81 [78] | [79] 82 | [wbbD]–[rfbC] | [wbbD],ECB_RS10270,wzy,ECB_RS10280,ECB_RS10285,vioB,vioA,wzx,[rfbC] |
| * | * | ÷ | NC_012967 | 3020200 | 3023823 | 3624 | 81 [80] | [78] 81 | [ECB_RS14900]–[ECB_RS14915] | [ECB_RS14900],ECB_RS14905,ECB_RS14910,[ECB_RS14915] |
| * | * | ÷ | NC_012967 | 3742201 | 3742836 | 636 | 81 [80] | [76] 83 | [ECB_RS18450]–[waaO] | [ECB_RS18450],[waaO] |
| * | * | ÷ | NC_012967 | 3893602–3894996 | 3895391 | 396–1790 | 82 [79] | [0] 205 | [ECB_RS25215]–[rbsD] | [ECB_RS25215],ECB_RS25215,[rbsD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 3894996 | NA (NA) | 199 (0.900) | 97/142 | 0.4 | 100% | intergenic (+26/‑162) | ECB_RS25215/rbsD | IS3‑like element IS150 family transposase/D‑ribose pyranase |
| ? | NC_012967 | 3895392 = | 0 (0.000) | coding (235/420 nt) | rbsD | D‑ribose pyranase | |||||