breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutation
evidence position mutation annotation gene description
RA 1,003,919 G→T N52K (AAC→AAA ompF ← porin OmpF

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_012967 2035100 2043254 8155 81 [78] [79] 82 [wbbD]–[rfbC] [wbbD],ECB_RS10270,wzy,ECB_RS10280,ECB_RS10285,vioB,vioA,wzx,[rfbC]
* * ÷ NC_012967 3020200 3023823 3624 81 [80] [78] 81 [ECB_RS14900]–[ECB_RS14915] [ECB_RS14900],ECB_RS14905,ECB_RS14910,[ECB_RS14915]
* * ÷ NC_012967 3742201 3742836 636 81 [80] [76] 83 [ECB_RS18450]–[waaO] [ECB_RS18450],[waaO]
* * ÷ NC_012967 3893602–3894996 3895391 396–1790 82 [79] [0] 205 [ECB_RS25215]–[rbsD] [ECB_RS25215],ECB_RS25215,[rbsD]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012967 = 3894996NA (NA)199 (0.900) 97/142 0.4 100% intergenic (+26/‑162) ECB_RS25215/rbsD IS3‑like element IS150 family transposase/D‑ribose pyranase
?NC_012967 3895392 = 0 (0.000)coding (235/420 nt) rbsD D‑ribose pyranase