New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012967 1882606 =30 (0.100)329 (1.150) 126/142 0.0 91.6% coding (133/852 nt) manZ PTS mannose transporter subunit IID
?NC_012967 = 1882610 NA (NA)coding (137/852 nt) manZ PTS mannose transporter subunit IID

Only 100 of 366 total aligned reads displayed.

TCTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCAC  >  NC_012967/1882535‑1882677
                                                                       |                                                                       
tCTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTtct                                                                         <  1:9229392/72‑1 (MQ=255)
ctgcgttctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatt                                                                         <  2:5211812‑M1/1‑1 (MQ=255)
ctgcgttctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatt                                                                         >  1:6160391‑M1/72‑72 (MQ=255)
 cTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTtctc                                                                        >  2:49282/1‑72 (MQ=255)
  ttCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTctct                                                                       >  1:1479719/1‑72 (MQ=255)
  gcgttctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctattct                                                                       <  2:2500141‑M1/3‑1 (MQ=255)
   tCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTa                                                                      <  2:9538534/72‑1 (MQ=255)
   tCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTa                                                                      <  1:9017026/72‑1 (MQ=255)
   tCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTa                                                                      <  2:9614429/72‑1 (MQ=255)
   cgttctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctattcta                                                                      >  2:4541988‑M1/69‑72 (MQ=255)
   cgttctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctattcta                                                                      <  1:5727441‑M1/4‑1 (MQ=255)
    gttctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctattctat                                                                     <  2:3946196‑M1/5‑1 (MQ=255)
    gttctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctattctat                                                                     >  2:9883460‑M1/68‑72 (MQ=255)
    gttctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctattctat                                                                     <  1:7744041‑M1/5‑1 (MQ=255)
    ccggCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTAt                                                                     <  1:8585083/69‑1 (MQ=255)
     ttctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggcttctgcttctctatTCTATg                                                                    <  2:6546498‑M1/6‑1 (MQ=255)
     ttctaacctcctccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATg                                                                    >  1:6477783‑M1/67‑72 (MQ=255)
     gtctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATg                                                                    >  2:3458864‑M1/67‑72 (MQ=255)
      tctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttntgcttctctatTCTATgg                                                                   <  1:3816051‑M1/7‑1 (MQ=255)
      tctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATgg                                                                   >  2:6731685‑M1/66‑72 (MQ=255)
       ctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGt                                                                  <  2:2074344‑M1/8‑1 (MQ=255)
       ctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGt                                                                  >  2:6134365‑M1/65‑72 (MQ=255)
        taacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTa                                                                 >  2:3134921‑M1/64‑72 (MQ=255)
        taacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTa                                                                 >  2:3609236‑M1/64‑72 (MQ=255)
         tacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTAc                                                                <  1:5061992‑M1/10‑1 (MQ=255)
         aacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttcttcttctctatTCTATGGTAc                                                                >  1:5176829‑M1/63‑72 (MQ=255)
         aacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTAc                                                                >  2:4636028‑M1/63‑72 (MQ=255)
         aacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTAc                                                                <  1:4748169‑M1/10‑1 (MQ=255)
         aacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTAc                                                                >  1:9196330‑M1/63‑72 (MQ=255)
         aacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTAc                                                                >  2:7942042‑M1/63‑72 (MQ=255)
           cctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCg                                                              >  1:5601922‑M1/61‑72 (MQ=255)
           cctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCg                                                              >  2:6905519‑M1/61‑72 (MQ=255)
            ctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCgg                                                             <  2:142071‑M1/13‑1 (MQ=255)
            ctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCgg                                                             <  2:1207926‑M1/13‑1 (MQ=255)
             tcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGc                                                            >  2:4263284‑M1/59‑72 (MQ=255)
              cttccaggcttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCa                                                           <  2:3732067‑M1/15‑1 (MQ=255)
               ttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCaa                                                          <  1:2856290‑M1/16‑1 (MQ=255)
               ttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCaa                                                          <  1:8101900‑M1/16‑1 (MQ=255)
                tccagtgttcatggaacttcgaacgtatgcaggcactgggtttctccttctctatTCTATGTTACCGGCAAt                                                         >  2:9702399‑M1/56‑72 (MQ=255)
                tccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAAt                                                         >  1:3057872‑M1/56‑72 (MQ=255)
                tccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcgtctctatTCTATGGTACCGGCAAt                                                         >  2:5701082‑M1/56‑72 (MQ=255)
                 ccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAAtt                                                        >  1:1819570‑M1/55‑72 (MQ=255)
                  cagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtc                                                       <  2:3310034‑M1/19‑1 (MQ=255)
                  cagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtc                                                       >  2:8445253‑M1/54‑72 (MQ=255)
                   aggtttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtcg                                                      >  2:7794286‑M1/53‑72 (MQ=255)
                   agggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtcg                                                      <  1:7878285‑M1/20‑1 (MQ=255)
                    gggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtcgt                                                     <  2:2282626‑M1/21‑1 (MQ=255)
                    gggttcatggaacttcgaacgtangcaggcactgggtttctgcttctctatTCTATGGTACCGGCGCTtcgt                                                     <  1:6369173‑M1/21‑1 (MQ=255)
                     ggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtcgtc                                                    >  1:2179365‑M1/51‑72 (MQ=255)
                     ggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtcgtc                                                    >  1:7234282‑M1/51‑72 (MQ=255)
                      gttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtcgtcg                                                   <  2:5113534‑M1/23‑1 (MQ=255)
                       ttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCTTCGc                                                  <  1:1427130‑M1/24‑1 (MQ=255)
                          atggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCctc                                               <  1:9937161‑M1/27‑1 (MQ=255)
                          atggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCctc                                               <  1:6786472‑M1/27‑1 (MQ=255)
                              aacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTAcc                                           <  2:5835864‑M1/31‑1 (MQ=255)
                              aacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTAcc                                           <  1:7124767‑M1/31‑1 (MQ=255)
                               acttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTAccc                                          >  2:7758816‑M1/41‑72 (MQ=255)
                               actgcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTAccc                                          >  2:2652193‑M1/41‑72 (MQ=255)
                                 ttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTg                                        >  2:476446‑M1/39‑72 (MQ=255)
                                  tcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTga                                       <  1:398636‑M1/35‑1 (MQ=255)
                                     aacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGaa                                    <  1:8246567‑M1/38‑1 (MQ=255)
                                       cgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGaaca                                  >  1:4896329‑M1/33‑72 (MQ=255)
                                       cgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGaaca                                  <  1:2572511‑M1/40‑1 (MQ=255)
                                        gtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGaacaa                                 <  1:7374715‑M1/41‑1 (MQ=255)
                                        gtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGaacaa                                 <  1:8906999‑M1/41‑1 (MQ=255)
                                            gcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGaa                             >  1:4056465‑M1/28‑72 (MQ=255)
                                             cgggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAg                            >  1:1006734‑M1/27‑72 (MQ=255)
                                              aggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGc                           <  2:5423713‑M1/47‑1 (MQ=255)
                                               ggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCt                          >  2:8175921‑M1/25‑72 (MQ=255)
                                               ggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCt                          >  2:8720847‑M1/25‑72 (MQ=255)
                                               cgcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCt                          >  2:7194625‑M1/25‑72 (MQ=255)
                                                gcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTc                         <  1:9320789‑M1/49‑1 (MQ=255)
                                                  actgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGCAGCTCGt                       <  1:2294431‑M1/51‑1 (MQ=255)
                                                  actgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGt                       <  1:9488946‑M1/51‑1 (MQ=255)
                                                  actgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGt                       >  1:5502917‑M1/22‑72 (MQ=255)
                                                   ctgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTa                      <  2:8001492‑M1/52‑1 (MQ=255)
                                                   ctgggtttctgcttctctatTCTATGGTACCGGCAATTCGACGCCTCTACCCTGAGAACAACGAAGCTCGTa                      <  1:327592‑M1/52‑1 (MQ=255)
                                                    tgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTaa                     >  2:9045266‑M1/20‑72 (MQ=255)
                                                      ggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAAc                   >  2:1355515‑M1/18‑72 (MQ=255)
                                                       gtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACa                  >  1:9780945‑M1/17‑72 (MQ=255)
                                                        tttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACaa                 <  2:1473546‑M1/57‑1 (MQ=255)
                                                        tttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACaa                 <  2:1747720‑M1/57‑1 (MQ=255)
                                                          tctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGc               <  2:630469‑M1/59‑1 (MQ=255)
                                                            tgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTa             <  1:7961944‑M1/61‑1 (MQ=255)
                                                            tgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTa             >  1:5323756‑M1/12‑72 (MQ=255)
                                                             gcttctctatTCTATGGTACNGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTAt            >  1:3725864‑M1/11‑72 (MQ=255)
                                                             gcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTAt            >  2:8959744‑M1/11‑72 (MQ=255)
                                                             gcttctctatTCGATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTAt            >  1:423240‑M1/11‑72 (MQ=255)
                                                              cttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTAtt           >  2:9361234‑M1/10‑72 (MQ=255)
                                                              cttctctatTCTATGGTACCGGCAATCCGTCGCCTCTACCCTGAGAACAACCAAGCTCGTAAACAAGCTAtt           <  2:7389758‑M1/63‑1 (MQ=255)
                                                                tctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCg         <  1:5435429‑M1/65‑1 (MQ=255)
                                                                tctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCGGAGAACAACGAAGCTCGTAAACAAGCTATTCg         >  1:591322‑M1/8‑72 (MQ=255)
                                                                nctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCg         >  1:1145441‑M1/8‑72 (MQ=255)
                                                                 ctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACNACGAAGCTCGTCAACAAGCTATTCGc        <  2:1065856‑M1/66‑1 (MQ=255)
                                                                  tctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGcc       <  2:6655761‑M1/67‑1 (MQ=255)
                                                                     atTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTc    >  2:9411292‑M1/3‑72 (MQ=255)
                                                                     atTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTc    <  1:4435638‑M1/70‑1 (MQ=255)
                                                                      tTCTATGGTACCGGCAANTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCa   <  1:883503‑M1/71‑1 (MQ=255)
                                                                      tTCTATGGAACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCa   >  2:9237209‑M1/2‑72 (MQ=255)
                                                                       tctATGGTACCGGCAATTCGTCGCCTATACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCAc  <  1:2145490/72‑1 (MQ=255)
                                                                       |                                                                       
TCTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCAC  >  NC_012967/1882535‑1882677

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.