New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012967 1882606 =30 (0.100)329 (1.150) 126/142 0.0 91.6% coding (133/852 nt) manZ PTS mannose transporter subunit IID
?NC_012967 = 1882610 NA (NA)coding (137/852 nt) manZ PTS mannose transporter subunit IID

Only 100 of 346 total aligned reads displayed.

CCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGG  >  NC_012967/1882539‑1882681
                                                                       |                                                                       
gttctaacctcttccagggttcatggaacttcgaacgtattcaggcactgggtttctgcttctctattctat                                                                         <  1:1989257‑M1/5‑1 (MQ=255)
gttctaacctcttccagggttcatggaacttcgaacgtatgcaggnactgggtttctgcttctctantctat                                                                         <  2:1105969‑M1/5‑1 (MQ=255)
gttctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctattctat                                                                         <  2:3946196‑M1/5‑1 (MQ=255)
gttctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctattctat                                                                         >  2:4542084‑M1/68‑72 (MQ=255)
gttctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctattctat                                                                         <  1:7744041‑M1/5‑1 (MQ=255)
ccTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTAt                                                                         <  2:2623209/72‑1 (MQ=255)
 ttctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATg                                                                        >  1:5727596‑M1/67‑72 (MQ=255)
 ttctaacctcctccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATg                                                                        >  1:6477783‑M1/67‑72 (MQ=255)
 gtctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATg                                                                        >  2:3458864‑M1/67‑72 (MQ=255)
  tctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATgg                                                                       <  2:6583283‑M1/7‑1 (MQ=255)
  tctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATgg                                                                       <  2:7645191‑M1/7‑1 (MQ=255)
  tctaacctcttccagggtncatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATgg                                                                       >  1:3770387‑M1/66‑72 (MQ=255)
   ctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGt                                                                      >  2:6134365‑M1/65‑72 (MQ=255)
   ctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGt                                                                      >  2:1424238‑M1/65‑72 (MQ=255)
    taacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTa                                                                     >  1:9213122‑M1/64‑72 (MQ=255)
    taacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTa                                                                     <  2:9540993‑M1/9‑1 (MQ=255)
     tacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTAc                                                                    <  1:5061992‑M1/10‑1 (MQ=255)
     aacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTAc                                                                    >  1:2161123‑M1/63‑72 (MQ=255)
      acctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTAcc                                                                   >  1:285263‑M1/62‑72 (MQ=255)
       cctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCg                                                                  >  2:237800‑M1/61‑72 (MQ=255)
       cctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCg                                                                  >  1:5601922‑M1/61‑72 (MQ=255)
        ctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCgg                                                                 <  1:2237000‑M1/13‑1 (MQ=255)
         tcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGc                                                                >  1:3310026‑M1/59‑72 (MQ=255)
         tcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGc                                                                >  1:2517137‑M1/59‑72 (MQ=255)
          cttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCa                                                               >  2:9308080‑M1/58‑72 (MQ=255)
           ttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCaa                                                              >  1:1454020‑M1/57‑72 (MQ=255)
           ttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCaa                                                              <  1:8101900‑M1/16‑1 (MQ=255)
            tccagtgttcatggaacttcgaacgtatgcaggcactgggtttctccttctctatTCTATGTTACCGGCAAt                                                             >  2:9702399‑M1/56‑72 (MQ=255)
            tccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAAt                                                             <  1:8654307‑M1/17‑1 (MQ=255)
             ccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAAtt                                                            >  1:4545596‑M1/55‑72 (MQ=255)
              cagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtc                                                           >  1:7105408‑M1/54‑72 (MQ=255)
              cagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtc                                                           <  2:5967820‑M1/19‑1 (MQ=255)
              cagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtc                                                           >  2:8445253‑M1/54‑72 (MQ=255)
              cagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtc                                                           >  1:9176139‑M1/54‑72 (MQ=255)
               agggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtcg                                                          <  2:9139618‑M1/20‑1 (MQ=255)
                gggttcatggaacttcgaacgtatgcagncactgggtttctgcttctctatTCTATGGTACCGGCAATtcgt                                                         <  2:3596993‑M1/21‑1 (MQ=255)
                gggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtcgt                                                         >  2:5801935‑M1/52‑72 (MQ=255)
                gggttcatggaacttcgaacgtangcaggcactgggtttctgcttctctatTCTATGGTACCGGCGCTtcgt                                                         <  1:6369173‑M1/21‑1 (MQ=255)
                 ggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtcgtc                                                        >  2:1734800‑M1/51‑72 (MQ=255)
                 ggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtcgtc                                                        >  1:7234282‑M1/51‑72 (MQ=255)
                  gttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtcgtcg                                                       <  2:9877619‑M1/23‑1 (MQ=255)
                    tcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGcc                                                     >  2:6695524‑M1/48‑72 (MQ=255)
                    tcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGcc                                                     >  2:8983556‑M1/48‑72 (MQ=255)
                      atggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCctc                                                   <  1:6786472‑M1/27‑1 (MQ=255)
                      atggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCctc                                                   <  1:7983799‑M1/27‑1 (MQ=255)
                      atggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCctc                                                   >  2:4846256‑M1/46‑72 (MQ=255)
                         gaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTAc                                                >  2:4685991‑M1/43‑72 (MQ=255)
                          aacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTAcc                                               <  2:3222568‑M1/31‑1 (MQ=255)
                               cgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTgag                                          <  1:8928731‑M1/36‑1 (MQ=255)
                                 aacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTATTCCCNGAGaa                                        <  2:423420‑M1/38‑1 (MQ=255)
                                  acgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGaac                                       >  2:6977706‑M1/34‑72 (MQ=255)
                                    gtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGaacaa                                     <  1:7374715‑M1/41‑1 (MQ=255)
                                      atgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACg                                   >  1:7917487‑M1/30‑72 (MQ=255)
                                      atgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACg                                   <  2:5475880‑M1/43‑1 (MQ=255)
                                      atgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACg                                   >  1:4938461‑M1/30‑72 (MQ=255)
                                       tgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTTCACCCCTCGAACAACGa                                  <  1:1288299‑M1/44‑1 (MQ=255)
                                        gcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGaa                                 >  1:4056465‑M1/28‑72 (MQ=255)
                                         cgggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAg                                >  1:1006734‑M1/27‑72 (MQ=255)
                                         caggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAg                                >  1:9365631‑M1/27‑72 (MQ=255)
                                          aggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGc                               >  1:3053181‑M1/26‑72 (MQ=255)
                                           ggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCt                              >  2:8720847‑M1/25‑72 (MQ=255)
                                           ggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCt                              >  1:9873382‑M1/25‑72 (MQ=255)
                                           cgcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCt                              >  2:7194625‑M1/25‑72 (MQ=255)
                                            gcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTc                             <  1:9320789‑M1/49‑1 (MQ=255)
                                              actgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGt                           <  2:2248539‑M1/51‑1 (MQ=255)
                                                tgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTaa                         <  2:7975987‑M1/53‑1 (MQ=255)
                                                tgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTaa                         <  1:8881867‑M1/53‑1 (MQ=255)
                                                 gggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTaaa                        >  2:4970672‑M1/19‑72 (MQ=255)
                                                  ggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAAc                       >  2:1355515‑M1/18‑72 (MQ=255)
                                                  ggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAAc                       <  2:2024786‑M1/55‑1 (MQ=255)
                                                   gtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACa                      >  1:3936344‑M1/17‑72 (MQ=255)
                                                    tttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACaa                     <  2:1473546‑M1/57‑1 (MQ=255)
                                                      tctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGc                   >  1:3102008‑M1/14‑72 (MQ=255)
                                                      tctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGc                   <  1:5927816‑M1/59‑1 (MQ=255)
                                                        tgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTa                 >  1:5323756‑M1/12‑72 (MQ=255)
                                                         gcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTAt                >  2:5266383‑M1/11‑72 (MQ=255)
                                                         gcttctctatTCGATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTAt                >  1:423240‑M1/11‑72 (MQ=255)
                                                          cttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTAtt               <  2:8080592‑M1/63‑1 (MQ=255)
                                                           ttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTc              <  1:5255171‑M1/64‑1 (MQ=255)
                                                            tctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCg             <  1:5435429‑M1/65‑1 (MQ=255)
                                                            nctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCg             >  1:1145441‑M1/8‑72 (MQ=255)
                                                                tatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACTAAGCTCGTAAACAAGCTATTCGCCGt         >  2:1237210‑M1/4‑72 (MQ=255)
                                                                tatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTGTTCGCCGt         >  2:3729317‑M1/4‑72 (MQ=255)
                                                                 atTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTc        >  2:9411292‑M1/3‑72 (MQ=255)
                                                                 atTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTc        >  1:8521569‑M1/3‑72 (MQ=255)
                                                                 atTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTc        <  1:4435638‑M1/70‑1 (MQ=255)
                                                                  tTCTATGGTACCGGCAGTTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCa       >  2:7767763‑M1/2‑72 (MQ=255)
                                                                  tTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCa       >  2:7838833‑M1/2‑72 (MQ=255)
                                                                  tTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCa       >  1:8236661‑M1/2‑72 (MQ=255)
                                                                  tTCTATGGAACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCa       >  2:9237209‑M1/2‑72 (MQ=255)
                                                                   tctATGGTACCGGCAATTCGTCGCCTCTACTCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCAc      <  2:646655/72‑1 (MQ=255)
                                                                   tctATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTTGCCCTCAc      >  2:2950596/1‑72 (MQ=255)
                                                                   tctATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCAc      >  1:9951784/1‑72 (MQ=255)
                                                                   tctATGGTACCGGCAATTCATCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCAc      <  1:551457/72‑1 (MQ=255)
                                                                    ctATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCAcc     <  2:6790739/72‑1 (MQ=255)
                                                                    ctATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCAcc     >  2:5180415/1‑72 (MQ=255)
                                                                     tATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCAACt    >  2:8013313/1‑72 (MQ=255)
                                                                     tATGGTACCGGCAATTCGTCGCATCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCt    <  1:2596772/72‑1 (MQ=255)
                                                                      aTGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTg   >  1:1698289/1‑72 (MQ=255)
                                                                       tGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTgg  >  2:7381484/1‑72 (MQ=255)
                                                                       |                                                                       
CCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGG  >  NC_012967/1882539‑1882681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.