New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_012967 | 1882606 = | 30 (0.100) | 329 (1.150) | 126/142 | 0.0 | 91.6% | coding (133/852 nt) | manZ | PTS mannose transporter subunit IID |
? | NC_012967 | = 1882610 | NA (NA) | coding (137/852 nt) | manZ | PTS mannose transporter subunit IID |
Only 100 of 346 total aligned reads displayed.
CCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGG > NC_012967/1882539‑1882681 | gttctaacctcttccagggttcatggaacttcgaacgtattcaggcactgggtttctgcttctctattctat < 1:1989257‑M1/5‑1 (MQ=255) gttctaacctcttccagggttcatggaacttcgaacgtatgcaggnactgggtttctgcttctctantctat < 2:1105969‑M1/5‑1 (MQ=255) gttctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctattctat < 2:3946196‑M1/5‑1 (MQ=255) gttctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctattctat > 2:4542084‑M1/68‑72 (MQ=255) gttctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctattctat < 1:7744041‑M1/5‑1 (MQ=255) ccTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTAt < 2:2623209/72‑1 (MQ=255) ttctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATg > 1:5727596‑M1/67‑72 (MQ=255) ttctaacctcctccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATg > 1:6477783‑M1/67‑72 (MQ=255) gtctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATg > 2:3458864‑M1/67‑72 (MQ=255) tctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATgg < 2:6583283‑M1/7‑1 (MQ=255) tctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATgg < 2:7645191‑M1/7‑1 (MQ=255) tctaacctcttccagggtncatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATgg > 1:3770387‑M1/66‑72 (MQ=255) ctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGt > 2:6134365‑M1/65‑72 (MQ=255) ctaacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGt > 2:1424238‑M1/65‑72 (MQ=255) taacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTa > 1:9213122‑M1/64‑72 (MQ=255) taacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTa < 2:9540993‑M1/9‑1 (MQ=255) tacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTAc < 1:5061992‑M1/10‑1 (MQ=255) aacctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTAc > 1:2161123‑M1/63‑72 (MQ=255) acctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTAcc > 1:285263‑M1/62‑72 (MQ=255) cctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCg > 2:237800‑M1/61‑72 (MQ=255) cctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCg > 1:5601922‑M1/61‑72 (MQ=255) ctcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCgg < 1:2237000‑M1/13‑1 (MQ=255) tcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGc > 1:3310026‑M1/59‑72 (MQ=255) tcttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGc > 1:2517137‑M1/59‑72 (MQ=255) cttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCa > 2:9308080‑M1/58‑72 (MQ=255) ttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCaa > 1:1454020‑M1/57‑72 (MQ=255) ttccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCaa < 1:8101900‑M1/16‑1 (MQ=255) tccagtgttcatggaacttcgaacgtatgcaggcactgggtttctccttctctatTCTATGTTACCGGCAAt > 2:9702399‑M1/56‑72 (MQ=255) tccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAAt < 1:8654307‑M1/17‑1 (MQ=255) ccagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAAtt > 1:4545596‑M1/55‑72 (MQ=255) cagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtc > 1:7105408‑M1/54‑72 (MQ=255) cagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtc < 2:5967820‑M1/19‑1 (MQ=255) cagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtc > 2:8445253‑M1/54‑72 (MQ=255) cagggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtc > 1:9176139‑M1/54‑72 (MQ=255) agggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtcg < 2:9139618‑M1/20‑1 (MQ=255) gggttcatggaacttcgaacgtatgcagncactgggtttctgcttctctatTCTATGGTACCGGCAATtcgt < 2:3596993‑M1/21‑1 (MQ=255) gggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtcgt > 2:5801935‑M1/52‑72 (MQ=255) gggttcatggaacttcgaacgtangcaggcactgggtttctgcttctctatTCTATGGTACCGGCGCTtcgt < 1:6369173‑M1/21‑1 (MQ=255) ggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtcgtc > 2:1734800‑M1/51‑72 (MQ=255) ggttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtcgtc > 1:7234282‑M1/51‑72 (MQ=255) gttcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATtcgtcg < 2:9877619‑M1/23‑1 (MQ=255) tcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGcc > 2:6695524‑M1/48‑72 (MQ=255) tcatggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGcc > 2:8983556‑M1/48‑72 (MQ=255) atggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCctc < 1:6786472‑M1/27‑1 (MQ=255) atggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCctc < 1:7983799‑M1/27‑1 (MQ=255) atggaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCctc > 2:4846256‑M1/46‑72 (MQ=255) gaacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTAc > 2:4685991‑M1/43‑72 (MQ=255) aacttcgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTAcc < 2:3222568‑M1/31‑1 (MQ=255) cgaacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTgag < 1:8928731‑M1/36‑1 (MQ=255) aacgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTATTCCCNGAGaa < 2:423420‑M1/38‑1 (MQ=255) acgtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGaac > 2:6977706‑M1/34‑72 (MQ=255) gtatgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGaacaa < 1:7374715‑M1/41‑1 (MQ=255) atgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACg > 1:7917487‑M1/30‑72 (MQ=255) atgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACg < 2:5475880‑M1/43‑1 (MQ=255) atgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACg > 1:4938461‑M1/30‑72 (MQ=255) tgcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTTCACCCCTCGAACAACGa < 1:1288299‑M1/44‑1 (MQ=255) gcaggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGaa > 1:4056465‑M1/28‑72 (MQ=255) cgggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAg > 1:1006734‑M1/27‑72 (MQ=255) caggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAg > 1:9365631‑M1/27‑72 (MQ=255) aggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGc > 1:3053181‑M1/26‑72 (MQ=255) ggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCt > 2:8720847‑M1/25‑72 (MQ=255) ggcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCt > 1:9873382‑M1/25‑72 (MQ=255) cgcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCt > 2:7194625‑M1/25‑72 (MQ=255) gcactgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTc < 1:9320789‑M1/49‑1 (MQ=255) actgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGt < 2:2248539‑M1/51‑1 (MQ=255) tgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTaa < 2:7975987‑M1/53‑1 (MQ=255) tgggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTaa < 1:8881867‑M1/53‑1 (MQ=255) gggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTaaa > 2:4970672‑M1/19‑72 (MQ=255) ggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAAc > 2:1355515‑M1/18‑72 (MQ=255) ggtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAAc < 2:2024786‑M1/55‑1 (MQ=255) gtttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACa > 1:3936344‑M1/17‑72 (MQ=255) tttctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACaa < 2:1473546‑M1/57‑1 (MQ=255) tctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGc > 1:3102008‑M1/14‑72 (MQ=255) tctgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGc < 1:5927816‑M1/59‑1 (MQ=255) tgcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTa > 1:5323756‑M1/12‑72 (MQ=255) gcttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTAt > 2:5266383‑M1/11‑72 (MQ=255) gcttctctatTCGATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTAt > 1:423240‑M1/11‑72 (MQ=255) cttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTAtt < 2:8080592‑M1/63‑1 (MQ=255) ttctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTc < 1:5255171‑M1/64‑1 (MQ=255) tctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCg < 1:5435429‑M1/65‑1 (MQ=255) nctctatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCg > 1:1145441‑M1/8‑72 (MQ=255) tatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACTAAGCTCGTAAACAAGCTATTCGCCGt > 2:1237210‑M1/4‑72 (MQ=255) tatTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTGTTCGCCGt > 2:3729317‑M1/4‑72 (MQ=255) atTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTc > 2:9411292‑M1/3‑72 (MQ=255) atTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTc > 1:8521569‑M1/3‑72 (MQ=255) atTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTc < 1:4435638‑M1/70‑1 (MQ=255) tTCTATGGTACCGGCAGTTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCa > 2:7767763‑M1/2‑72 (MQ=255) tTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCa > 2:7838833‑M1/2‑72 (MQ=255) tTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCa > 1:8236661‑M1/2‑72 (MQ=255) tTCTATGGAACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCa > 2:9237209‑M1/2‑72 (MQ=255) tctATGGTACCGGCAATTCGTCGCCTCTACTCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCAc < 2:646655/72‑1 (MQ=255) tctATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTTGCCCTCAc > 2:2950596/1‑72 (MQ=255) tctATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCAc > 1:9951784/1‑72 (MQ=255) tctATGGTACCGGCAATTCATCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCAc < 1:551457/72‑1 (MQ=255) ctATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCAcc < 2:6790739/72‑1 (MQ=255) ctATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCAcc > 2:5180415/1‑72 (MQ=255) tATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCAACt > 2:8013313/1‑72 (MQ=255) tATGGTACCGGCAATTCGTCGCATCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCt < 1:2596772/72‑1 (MQ=255) aTGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTg > 1:1698289/1‑72 (MQ=255) tGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTgg > 2:7381484/1‑72 (MQ=255) | CCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGG > NC_012967/1882539‑1882681 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |